BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60300.3
Length=2498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496166 jgi|Araly1|496166|fgenesh2_kg.8__1982__AT5G60300.2 3784 0.0
Ahg950784 jgi|Araly1|950784|scaffold_802671.1 1210 0.0
Ahg496163 jgi|Araly1|496163|fgenesh2_kg.8__1979__AT5G60270.1 547 1e-154
> Ahg496166 jgi|Araly1|496166|fgenesh2_kg.8__1982__AT5G60300.2
Length=2407
Score = 3784 bits (2049), Expect = 0.0
Identities = 2224/2307 (96%), Gaps = 18/2307 (1%)
Strand=Plus/Plus
Query 1 GTCAGAATATTTTGAAAATCACGTTGAAGCTTTATGGTTATCTTTTTAATATAATCGTGT 60
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GTCAGAATATTTTGAAAACCACGTTGAAGCTTTATAGTTATCTTTTTAATATAATCGTGT 60
Query 61 TAGTGGAGTACAGTTTGTAAAGCAAAGCTTGCGAGGT------T-ATGA-TT-CATCATC 111
||||||||||||||||||||||||||||||||||||| | ||| || || ||||
Sbjct 61 TAGTGGAGTACAGTTTGTAAAGCAAAGCTTGCGAGGTGCACCGTCTTGAGTTCCA-CATC 119
Query 112 AGATCCAGACTCTCTGATTCATCATCTGCAATGGCTCGTTGGTTGCTTCAGATCCTGATC 171
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATCCAGACTCTCTGGTTCATCATCTGCAATGGCTCGTTGGTTGCTTCAGATCCTGATC 179
Query 172 ATCTCTTCTCTTCATCTGAGCTCTGTATCAAGTCAACAAGAGACAAGCTTTGTCTATGAA 231
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 180 ATCTCTTCTCTTCATCTGATTTCTCTATCAAGTCAACAAGAGACAAGCTTTGTCTATGAA 239
Query 232 AGCTTCCTCGACCGACAAAATCTTTATCTTGACAAATCTGCAATAGTACTTCCCAGTGGA 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGCTTCCTCGACCGACAAAATCTTTATCTTGACAAATCTGCAATAGTACTTCCCAGTGGT 299
Query 292 TTATTGCAG-TTGACAAATGCTTCAGAGCACCAGATGGGTCATGCTTTCCACAAGAAACC 350
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATTGCAGCTT-ACGAATGCTTCAGAGCACCAGATGGGTCATGCTTTCCACAAGAAACC 358
Query 351 AATTGAGTTCAGTTCATCTGGACCACTCTCCTTCTCAACACACTTTGTGTGTGCTTTGGT 410
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 359 AATTGAGTTCAGTTCATCTGGACCACTCTCTTTCTCAACACACTTTGTGTGTGCTCTGGT 418
Query 411 GCCTAAGCCAGGTTTTGAAGGTGGCCATGGTATTGTCTTTGTATTGTCTCCTTCTATGGA 470
|||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 419 GCCTAAGCCACGTGTTGAAGGCGGCCATGGTATTGTCTTTGTATTATCTCCTTCTATGGA 478
Query 471 CTTT-ACTCACGCAGAATCAACTAGATACTTGGGGATTTTCAATGCTTCAACAAATGGAT 529
||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 -TTTCACGCACGCAGAATCAACTAGATACTTGGGGATTTTCAATGCTTCAACAAGTGGAT 537
Query 530 CTTCCTCTTATCACGTACTTGCTGTTGAGCTTGACACTATTTGGAACCCAGATTTCAAAG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTCCTCTTATCACGTACTTGCTGTTGAGCTTGACACTATTTGGAACCCAGATTTCAAAG 597
Query 590 ATATTGACCACAATCATGTGGGGATTGATGTGAACAGTCCTATATCTGTCGCAATAGCTT 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATATCGACCACAATCATGTGGGGATTGATGTGAACAGTCCTATATCTGTCGCAATAGCTT 657
Query 650 CAGCATCTTACTATTCCGACATGAAAGGGAGTAATGAAAGCATAAACCTCTTGAGTGGAA 709
||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||
Sbjct 658 CAGCATCTTACTATTCCGACATGAAAGGGAGCAACGAAAGCATAAACCTTTTAAGCGGAA 717
Query 710 ACCCTATACAGGTCTGGGTGGATTATGAAGGCACTTTGCTCAATGTTTCGGTTGCTCCTC 769
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 718 ACCCTATACAGGTTTGGGTGGATTATGAAGGCACTTTGCTCAATGTGTCGATTGCTCCTC 777
Query 770 TTGAAGTCCAGAAGCCAACTCGACCTCTTTTATCACACCCCATCAACCTTACAGAACTTT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGAAGTCCAGAAGCCAACTCGACCTCTTTTATCACACCCCATCAACCTTACAGAACTTT 837
Query 830 TTCCAAATAGATCAAGTCTGTTTGCTGGGTTCTCTGCAGCAACAGGGACAGCGATCAGTG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCCAAATAGATCAAGTCTGTTTGCTGGGTTCTCTGCAGCAACAGGGACAGCGATCAGTG 897
Query 890 ATCAATATATTCTCTGGTGGAGTTTTAGCA-TAGACAGAGGATCGCTGCAGCGACTTGAT 948
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 898 ACCAATATATTCTCTGGTGGAGTTTTAGCACAAG-CAGAGGATCGCTGCAGCGACTTGAT 956
Query 949 ATCTCAAAACTTCCTGAAGTTCCTCATCCTAGAGCTCCACATAAGAAAGTATCTACACTG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 ATCTCAAAACTTCCTGAAGTTCCTCATCCTAGAGCTCCACATAAGAAAGTATCTAGACTG 1016
Query 1009 ATTATTCTCCTACCCGTTTGTCTGGCTATTTTGGTGTTGGCTGTTCTTGCAGGACTTTAT 1068
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1017 ATTATTCTTCTGCCCGTTTGTCTGGCTATTTTGGTGTTGGCTGTTCTTGCAGGGCTTTAT 1076
Query 1069 TTCCGCAGGAGACGCAAGTATTCAGAAGTATCTGAAACATGGGAAAAGGAGTTTGATGCG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTCCGCAGGAGACGCAAGTATTCAGAAGTATCTGAAACATGGGAAAAGGAGTTTGATGCG 1136
Query 1129 CATCGGTTCTCTTACAGGTCCTTGTTCAAAGCAACAAAGGGGTTCAGCAAAGATGAATTT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CATCGGTTCTCTTACAGGTCCTTGTTCAAAGCAACAAAGGGGTTCAGCAAAGATGAATTT 1196
Query 1189 CTGGGAAAAGGAGGTTTTGGAGAAGTTTATAGAGGAAATCTCCCACAAGGCAGAGAAATA 1248
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1197 CTCGGAAAAGGAGGTTTTGGAGAAGTTTATAGAGGAAATCTGCCACAAGGCAGAGAAATA 1256
Query 1249 GCAGTGAAAAGAGTGTCCCATAATGGTGATGAAGGTGTGAAGCAGTTTGTGGCTGAAGTC 1308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCAGTGAAGAGAGTGTCCCATAATGGTGATGAAGGTGTGAAGCAGTTTGTGGCTGAAGTC 1316
Query 1309 GTGAGCATGAGATGTCTGAAACACAGGAATCTTGTACCACTGTTTGGGTATTGCAGAAGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTGAGCATGAGATGTCTGAAACACAGGAATCTTGTACCACTGTTTGGGTATTGCAGAAGA 1376
Query 1369 AAACGAGAACTTCTTCTTGTCTCAGAGTACATGCCCAATGGTAGTCTTGACGAGCATTTG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAACGAGAACTTCTTCTTGTCTCAGAGTACATGCCCAATGGTAGTCTTGACGAGCATTTG 1436
Query 1429 TTTGATGACCAGAAACCGGTTCTTTCTTGGTCACAGAGACTTGTGGTCGTTAAGGGTATA 1488
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1437 TTTGATGACCAGAAACCGGTTCTTTCTTGGTCACAAAGACTTGTGGTTGTTAAGGGTATA 1496
Query 1489 GCCTCTGCTCTCTGGTACCTGCATACAGGTGCTGACCAAGTTGTTCTGCACCGAGATGTC 1548
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 GCCTCTGCTCTCTGGTACCTGCATACAGGTGCTGACCAAGTTGTTCTACACCGAGATGTC 1556
Query 1549 AAAGCTTCCAACATTATGTTAGACGCGGAGTTCCATGGAAGGTTAGGGGATTTTGGCATG 1608
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1557 AAAGCTTCCAACATTATGTTAGACGCGGAGTTAAATGGAAGGTTAGGGGATTTTGGCATG 1616
Query 1609 GCCAGGTTTCATGAGCACGGAGGCAATGCAGCTACAACAGCAGCTGTTGGGA-CTGTAGG 1667
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1617 GCCAGGTTTCATGAGCACGGAGGCAATGCAGCTACAACAGCAGCTGT-GGGAACTGTAGG 1675
Query 1668 GTACATGGCCCCGGAGCTAATCACAATGGGAGCTTCCACTGGAACTGATGTTTACGCATT 1727
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1676 GTACATGGCGCCGGAGCTAATCACAATGGGAGCTTCCACTGGAACTGATGTTTATGCTTT 1735
Query 1728 TGGTGTTTTCATGCTTGAAGTAACCTGTGGGAGGAGACCCGTGGAACCGCAGTTGCAAGT 1787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1736 TGGTGTTTTCATGCTTGAAGTAACCTGTGGGAGGAGACCTGTGGAACCGCAGTTGCAAGT 1795
Query 1788 TGAGAAACGACATATGATCAAATGGGTTTGTGAGTGCTGGAAAAAGGATTCTTTGCTTGA 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TGAGAAACGACATATGATCAAATGGGTTTGTGAGTGCTGGAAAAAGGATTCTTTGCTTGA 1855
Query 1848 TGCTACTGACCCGAGATTGGGAGGTAAATTTGTAGCTGAGGAAGTCGAGATGGTTATGAA 1907
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 1856 TGCTACTGACCCGAGATTGGGAGGTGAATTCATAGCCGAGGAAGTCGAGATGGTTATGAA 1915
Query 1908 ACTGGGTCTGCTCTGTTCAAATATAGTGCCAGAATCCAGACCCACAATGGAACAAGTGGT 1967
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1916 ACTGGGTCTGCTCTGTTCAAATATAGTGCCAGAATCCAGACCAACAATGGAACAAGTGGT 1975
Query 1968 CCTGTACCTAAACAAAAACCTACCTTTGCCAGATTTCTCACCATACACTTTGGGGATTGG 2027
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1976 CCTTTACCTAAACAAAAACCTACCTTTGCCAGATTTCTCTCCATACACTTTGGGGATTGG 2035
Query 2028 CACATTTGCTCCGGTTCTGGTAGATGCATCCTCCCTTGTAGTCTCTTCCGCTTCATGGAG 2087
|||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 2036 CACATTTGCTCCTGTTCTGGTTGATGCATCCTCCCTTGTAGTCTCATCTGCTTCATGGAG 2095
Query 2088 TTTGTCAGGTCCATCGATGTCTTCATCCTCGCCCAACCACTCACCTTACGCTTGGCAGTC 2147
|| ||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| |||||
Sbjct 2096 TTGGTCAGGTCCCTCGATGTCTTCTTCCTCGGCCAACCATTCACCTTATGCTTGTCAGTC 2155
Query 2148 AACAGATCAGCCATGGGGACAGACAATAGACACTAAGAACTCTCTTCACATAGTTGCAGA 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AACAGATCAGCCATGGGGACAGACAATAGACACTAAGAACTCTCTTCACATAGTTGCAGA 2215
Query 2208 ACCAGAGAAGCCCTCACCCGCTGTCAAAATGGTCACATTGCCTGCAGAAGATCCTCAGTC 2267
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2216 ACCAGAGAAGCCCTCACCCGCTGTCAAAACGGTCACATTGCCTGCAGAAGATCATCAGTC 2275
Query 2268 CAATCATTCCAGCATCAGCAGTCAGAG 2294
|||| ||||||||||||||||||||||
Sbjct 2276 CAATAATTCCAGCATCAGCAGTCAGAG 2302
> Ahg950784 jgi|Araly1|950784|scaffold_802671.1
Length=1781
Score = 1210 bits (655), Expect = 0.0
Identities = 1047/1231 (85%), Gaps = 48/1231 (4%)
Strand=Plus/Plus
Query 367 TCTGGACCACTCTCCTTCTCAACACACTTTGTGTGTGCTTTGGTGCCTAAGCCAGGTTTT 426
||| |||||||||||||||||||||| ||||| || ||| | |||||| |||| || ||
Sbjct 172 TCTAGACCACTCTCCTTCTCAACACATTTTGTTTGCGCTCTAGTGCCTCAGCCTGGAGTT 231
Query 427 GAAGGTGGCCATGGTATTGTCTTTGTATTGTCTCCTTCTATGGACTTTACT--CACGCAG 484
||||| || ||||| || | ||||||| | |||||||| ||||| ||| || || ||||
Sbjct 232 GAAGGCGGTCATGGAATGGCCTTTGTAGTATCTCCTTCAATGGA-TTT-CTCGCATGCAG 289
Query 485 AATCAACTAGATACTTGGGGATTTTCAATGCT-TCAACAAATGGATCTTCCTCTTATCAC 543
|||||||||||||||||||||||||||| | | |||| |||||||||| |||||| |||
Sbjct 290 AATCAACTAGATACTTGGGGATTTTCAACG-TGTCAAAAAATGGATCTCCCTCTTCTCAT 348
Query 544 GTACTTGCTGTTGAGCTTGACACTATTTGGAACCCAGATTTCAAAGATATTGACCACAAT 603
|| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 349 GTGCTTGCTGTTGAGCTTGACACTATTTGGAACCCGGATTTTGAAGATATCGACCACAAT 408
Query 604 CATGTGGGGATTGATGTGAACAGTCCTATATCTG-TCGCAATAGCTTCAGCATCTTACTA 662
||||||||||||||||||||||||||| | || | | | ||||||||| ||||||||||
Sbjct 409 CATGTGGGGATTGATGTGAACAGTCCTCTGTCGGATGG-AATAGCTTCGGCATCTTACTT 467
Query 663 TTCCGACATGAAAG-GGA-GTAATGAAAGCATAAACCTCTTGAGTGGAAACCCTAT-ACA 719
||||||||| |||| ||| | || ||||||||||||||||||||||||||||| || |||
Sbjct 468 TTCCGACAT-AAAGCGGAAG-AACGAAAGCATAAACCTCTTGAGTGGAAACCC-ATTACA 524
Query 720 GGTCTGGGTGGATTATGAAGGCACTTTGCTCAATGTTTCGGTTGCTCCTCT-TGAAGTCC 778
||| ||||| |||||||||| || | |||||||||||||| | |||||| | ||||||||
Sbjct 525 GGTTTGGGTTGATTATGAAGACAATATGCTCAATGTTTCGATGGCTCCT-TGTGAAGTCC 583
Query 779 AGAAGCCAACTCGA-C-C-TCTTTTATCACACCCCATCAACCTTACAGA-ACTTTTTCCA 834
||||||||| ||| | | |||||| ||||| |||||||| ||| |||| | |||| |||
Sbjct 584 AGAAGCCAAGTCGCTCGCCTCTTTTGTCACAACCCATCAATCTTTCAGATA-TTTTCCCA 642
Query 835 AATAGATCAAGTCTGTTTGCTGGGTTCTCTGCAGCAACAGGGACAGCGATCAGTGATCAA 894
|| ||| | | || |||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 643 AACAGA--A-GACTTTTTGTTGGGTTCTCTGCAGCAACAGGGACAGCTATCAGTTATCAA 699
Query 895 TATATTCTCTGGTGGAGTTTTAGCATA-GACAGAGGATCGCTGCAGCGACTTGATATCTC 953
|||||||| | |||||||||||||| | | ||||||||| |||||||||||||| |||||
Sbjct 700 TATATTCTTTCGTGGAGTTTTAGCACAAG-CAGAGGATCACTGCAGCGACTTGACATCTC 758
Query 954 AAAACTTCCTGAAGTTCCTCATCCTAGAGCTCCACATAAGAAAGTATCTACACTGATTAT 1013
|| ||| ||||||||||| |||||||||||| ||||||||| ||||| | ||| ||||
Sbjct 759 AAGACTACCTGAAGTTCCACATCCTAGAGCTGAACATAAGAACCTATCTCCGCTGTTTAT 818
Query 1014 TCTCCTACCCG-TTTGTCTGGCTATTTTGGTG-TTGGCTGT--TCTTGCAGGACTTTA-T 1068
| |||| | | ||| ||||||||| ||| | ||| ||| |||| | ||| | || |
Sbjct 819 TGTCCTGCTTGGTTT-TCTGGCTATCATGG-GCTTG--TGTACTCTTACTGGAATGTACT 874
Query 1069 TTCCGCAGGAG-ACGCAAGTATTCAGAAGTATCTGAAACATGGGAAAAGGAGTTTGATGC 1127
|| ||||| | |||||||| |||||||| | ||| ||||||||||||| |||| |||
Sbjct 875 TTTTT-AGGAGGA-GCAAGTATGCAGAAGTAACCGAAGCATGGGAAAAGGAATTTGGTGC 932
Query 1128 GCATCGGTTCTCTTACAGGTCCTTGTTCAAAGCAACAAAGGGGTTCAGCAAAGATGAATT 1187
||||| |||||||||| ||||||| |||||||||||| ||||| | ||| |||| |||
Sbjct 933 ACATCGATTCTCTTACAAATCCTTGTACAAAGCAACAAAAGGGTTTAACAAGGATGGATT 992
Query 1188 TCTGGGAAAAGGAGGTTTTGGAGAAGTTTATAGAGGAAATCTCCCA-CAAGGCAGAGAAA 1246
||| |||| |||||||||||||||||| || |||||||||||| ||| ||||||||
Sbjct 993 TCTTGGAAGAGGAGGTTTTGGAGAAGTCTACAGAGGAAATCTCTTTTCAAA-CAGAGAAA 1051
Query 1247 TAGCAGTGAAAAGAGTGTCCCATAATGGTGATGAAGGTGTGAAGCAGTTTGTGGCTGAAG 1306
|||| ||||| ||| |||| ||| | |||||| ||||||||||||| |||||||||||||
Sbjct 1052 TAGCTGTGAAGAGAATGTCACATGACGGTGATCAAGGTGTGAAGCAATTTGTGGCTGAAG 1111
Query 1307 TCGTGAGCATGAGATGTCTGAAACACAGGAATCTTGTACCACTGT-TTGGGTATTGCAGA 1365
||||||||||||||||||||||||||||||||||||| || || | |||||||||||||
Sbjct 1112 TCGTGAGCATGAGATGTCTGAAACACAGGAATCTTGTTCCGCT-TCTTGGGTATTGCAGG 1170
Query 1366 AGAAAACGA-GAACTTCTTCTTGTCTCAGAGTACATGCCCAATGGTAGTCTTGACGAGCA 1424
||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1171 AGAAAAC-ATGAGTTTCTTCTTGTCTCTGAGTACATGCCCAATGGTAGTCTTGACGAGCA 1229
Query 1425 TTTGTTTGATGACCAGAAACCGGTTCTTTCTTGGTC-ACAGAGACTTGTGGTCGTTAAGG 1483
|||||||||||||||||||||||| ||||||||| | ||| ||||||||| | ||||||
Sbjct 1230 TTTGTTTGATGACCAGAAACCGGTACTTTCTTGG-CGACAAAGACTTGTGATTATTAAGG 1288
Query 1484 GTATAGCCT--CTGCTCTCTGGTACCTGCATACAGGTGCTGACCAAGTTGTTCTGCACCG 1541
|||| || | |||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1289 GTATTGCATATCTGCACTCTGTTACCTTCATACAGGTGCGGACCAAGTTGTTCTGCACCG 1348
Query 1542 AGATGTCAAAGCTTCCAACATTATGTTAGAC 1572
|||| |||||||||| ||||||||||| |||
Sbjct 1349 AGATATCAAAGCTTCAAACATTATGTTGGAC 1379
Score = 182 bits (98), Expect = 1e-44
Identities = 174/210 (83%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 1615 TTTCATGAGCACGGAGGCAAT-GCAG-CTACAACA-GCAGCTGTTGGGACTGTAGGGTAC 1671
||||| || || |||||| || ||| || ||||| || || || |||||| | ||||||
Sbjct 1381 TTTCACGACCATGGAGGC-ATCTCAGACT-CAACATGC-GCCGTGGGGACTATCGGGTAC 1437
Query 1672 ATGGCCCCGGAGCTA-ATCACAATGGGAGCTTCCACTGGAACTGATGTTTACGCATTTGG 1730
||||| || || || ||| |||||||| |||||| ||||||||| || || |||||
Sbjct 1438 ATGGCGCCAGATATACTTCA-TATGGGAGCATCCACTAGAACTGATGAGTATGCCTTTGG 1496
Query 1731 TGTTTTCATGCTTGAAGTAACCTGTGGGAGGAGACCCGTGGAACCGCAGTTGCAAGTTGA 1790
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 TGTTTTCATGGTTGAAGTAACCTGTGGGAGGAGACCTGTGGAACCGCAGTTGCAAGTTGA 1556
Query 1791 GAAACGACATATGATCAAATGGGTTTGTGA 1820
||||||| | |||| ||||||||| |||
Sbjct 1557 GAAACGAGTTCTGATTGAATGGGTTTATGA 1586
Score = 141 bits (76), Expect = 2e-32
Identities = 114/132 (86%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 1939 GAATCCAGACCCACAATGGAACAAGTGGTCCTGTACCTAAACAAAAACCTACCTTTGCCA 1998
||||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||||||||||
Sbjct 1585 GAATCCAGACCTACAATGGAGCAAGTTGTCCTATACTTAAACAAGAACCTACCTTTGCCA 1644
Query 1999 GATTTCTCACCATACACTTTGGGGATTGGCA--CATTTGCTCCGGTTCTGGTAGATGCAT 2056
|||||||||||||| || |||||||| ||| |||| || |||||||| | ||||||
Sbjct 1645 GATTTCTCACCATATACAGTGGGGATTAGCAATCATT--CTTCGGTTCTGATTGATGCAG 1702
Query 2057 CCTCCCTTGTAG 2068
||||||||||||
Sbjct 1703 CCTCCCTTGTAG 1714
> Ahg496163 jgi|Araly1|496163|fgenesh2_kg.8__1979__AT5G60270.1
Length=2222
Score = 547 bits (296), Expect = 1e-154
Identities = 1308/1770 (74%), Gaps = 176/1770 (10%)
Strand=Plus/Plus
Query 321 CCAGATGGGTCATGCTTTCCACAAGAAACCAATTGAGTTCAGTTCATCTGGACCACTCTC 380
||| || ||||||| |||| || |||| || |||||||||| ||||||| | || ||||
Sbjct 195 CCAAATAGGTCATGTTTTCTACGAGAAGCCGATTGAGTTCAAATCATCTGAATCAGTCTC 254
Query 381 CTTCTCAACACACTTTGTGTGTGCTTTGGTGCCTAAGCCAGGT--TTTGAAGGTGGCCAT 438
||||| ||||| ||||||||||| || | ||| | ||||| | | | ||||||||
Sbjct 255 GTTCTCGACACATTTTGTGTGTGCACTGCTCCCT--G-CAGGTGATCCG-A-GTGGCCAT 309
Query 439 GGTATTG-TC-TTTGTATTGTCTCCTTCTA-TGGACTTT-ACTCACGCAGAATCAACTAG 494
|| | || | ||| | || |||| ||| | | || ||| | ||||||| ||||| |
Sbjct 310 GGCA-TGACCTTTTTTGTT-TCTCATTCCACT-GA-TTTCAAAGACGCAGAGGCAACTCG 365
Query 495 ATACTTGGGGATTTTCAATGCTTCAACAAATGGATCTTCCTCTTATCACGT-ACTT-GCT 552
|||||| ||| ||||||| | | |||||||||| | || | ||||| || |||
Sbjct 366 ATACTTCGGGCTTTTCAA-----C-AGAAATGGATCTACTTC-CA-CACGTGTGTTGGCT 417
Query 553 GTTGAGCTTGACAC-TATTTGGAACCCAGATTTCAAAGATATTGACCACAATCATGTGGG 611
|| ||||||||||| | | | | || ||| | ||||| || | | |||||||| ||
Sbjct 418 GTAGAGCTTGACACTTCTCTAGCTTCC-GATGTGAAAGACATCAATGATAATCATGTTGG 476
Query 612 GATTGATGTGAACAGTC-CTATA-TCTGTCGCAATAGCT-TC-A-GCATCTTACTATTC- 665
||||||||||||||| | | | ||||| | | | || | | || ||||| | |||
Sbjct 477 GATTGATGTGAACAG-CGC-GGAGTCTGT-G--ACATCTGCCAATGCTTCTTA-T-TTCT 529
Query 666 C-GAC-ATGAAAGGG-AGTAATGAAAG-CATAAACCTCTTGAGTGGAAACCCTATACAGG 721
| ||| | | ||||| || ||| | || |||||| ||||||||||| | ||||| ||||
Sbjct 530 CAGACAAAG-AAGGGAAG-AAT-ATAGACATAAAACTCTTGAGTGGTGATCCTATCCAGG 586
Query 722 TCTGGGTGGATTATGAAGGCACTT--TGCTCAATGTTTCGGTT-GCTCCTCTTGAAGTCC 778
| |||||||| |||||||| | || ||||| ||||| || ||||||||| || |
Sbjct 587 TTTGGGTGGACTATGAAGG-A-TTAACACTCAACGTTTC-ATTGGCTCCTCTTAAAAACA 643
Query 779 AGAAGCCAACTC-GACCTCTTTTATC-AC-AC-CCCATCAACCTTACAGAACT-TTTTCC 833
|||| |||| | |||||||||| || | || ||||||| ||||| | | | |||| |
Sbjct 644 AGAAACCAA-GCAGACCTCTTTTGTCGTCAACATCCATCAATCTTACTG-A-TATTTTGC 700
Query 834 AA-ATAGATCAAGTCTGTTTGCT-GGGTTCTCT-GCAGCAACAGGGAC-AGCGATCAGTG 889
|| ||| ||| |||||| | ||||| ||| || |||| ||| | ||| || |||
Sbjct 701 AAGGTAG---AAGAATGTTTG-TCGGGTTTTCTGGC-TCAACCGGGTCAAGC-ATGAGTT 754
Query 890 ATCAATATATTCTCTGGTGGAGTTTTAGC-ATAGACAGAGG-ATCGCTGCAGCGAC-TTG 946
| || || || ||| |||||||||| ||| | || || || || |||| | || |||
Sbjct 755 ACCAGTACATACTCGGGTGGAGTTTCAGCAAAAG-CA-TGGCGTCTCTGCTG-AACATTG 811
Query 947 ATATCTCAAAACTTCCTGAAGTTCCTCATC-CTAGAGCTCCACATAAGAAAGTA-TCTAC 1004
| |||||||||||||| |||||||||| | || || ||| ||| |||| | |||||
Sbjct 812 ACATCTCAAAACTTCCCAAAGTTCCTCA-CACT--AG---CAC-TAA-AAAGAAGTCTAC 863
Query 1005 A-CTGATTATTCTC-CT-ACCCG-TTTGTCTGGCT-A-TTT--TGGTGTTGGCTG-TTCT 1055
| || ||| ||| | | | || || | | | ||| | || |||| | ||||
Sbjct 864 ATCT-CCTATGCTCGGTGTTCTGCTTGGT-TTAATAACTTTCATAGTTTTGG-GGATTCT 920
Query 1056 TGCAGGA-CTTTATTTCCGCAGGAGACGCAAGTATTCAGAAGTATCTGA-AACATGGGAA 1113
|| | | | |||||| |||||| | ||| | |||||| || | |||||||
Sbjct 921 TGTTGCAGC-TTATTTGTATAGGAGAAACTTGTACGCTGAAGTAAGAGAGGA-ATGGGAA 978
Query 1114 AAGGAGTTTGATGCGCA-TC-GGT-TCTCTTACAGGTCCT-TGTTCAAAGCAACAAAGGG 1169
||||||| || | | || || ||| | || |||| | || | | |||||||||||| ||
Sbjct 979 AAGGAGTATGGT-C-CACTCAGGTAT-TCCTACAAAT-CTCTATACAAAGCAACAAAAGG 1034
Query 1170 GTTCAGCA-AAGA-TGAATTTC-TGGGAAAAGGAGGTTTTGGAGAAGTTTATAGAGGAAA 1226
||||| | | || |||||||| |||| | |||||||||||| ||||| || | |||||
Sbjct 1035 GTTCA--ATAGGACTGAATTTCTTGGG-AGAGGAGGTTTTGGTGAAGTCTACAAAGGAAC 1091
Query 1227 TCT-CC-C--A-CA-AG-GC--AGAGAAATAGCAGTGAAAAGAGTGTCCCATAATGGTGA 1277
||| || | | || || | |||||| |||| ||||| |||| || ||| |||||||
Sbjct 1092 TCTCCCTCGGAGCAGAGAACTGAGAGAAGTAGCTGTGAAGCGAGTATCACATGATGGTGA 1151
Query 1278 TG-AAGGTGTGAAGCAGTTTGTGGCTGAAG-TCGTGAGCATGA-GATGTCTGAAACACAG 1334
| | ||| ||||||| ||||| |||| || |||||||||||| || || | |||||| |
Sbjct 1152 -GCAGGGTATGAAGCAATTTGTTGCTG-AGATCGTGAGCATGAGGA-GTTTAAAACACCG 1208
Query 1335 GAATCTT-GTACCACTGT-TTGGGTATTGCAGAAGAAAACGA-GAACTTCTT-CTTGTCT 1390
| | ||| || ||||| | ||||||||||||| ||||||| | | | || || || || |
Sbjct 1209 G-AGCTTGGTTCCACT-TCTTGGGTATTGCAGGAGAAAAC-ATG-AGTTATTACTGGTGT 1264
Query 1391 CAGAGTACATGCCCAATGGTAGTCTTGACGAGCATTTGTTTGATGACCAGAAACCGGT-T 1449
| ||||||||||| ||||||||||||||| | | |||||| || | | | | || |
Sbjct 1265 CTGAGTACATGCCAAATGGTAGTCTTGACCATTACTTGTTTAATCATGATAGA-TTGTCT 1323
Query 1450 CTTTCTTGGTCACAG-AGACTTGTGGTCGTTAAG-GGTATAGCCTCTGCTCTCT-GGTAC 1506
||| | |||| || ||||| | | || || || | || || || ||||| | | |||
Sbjct 1324 CTTCCCTGGT-GGAGAAGACTCGCGATCCTT-AGAGACATCGCATCAGCTCT-TAGTTAC 1380
Query 1507 CTGCATACAGGTGCTGACCAAGTTGTTCTGCACCGAGATGTCAAAGCTTCCAACATTATG 1566
| ||||||| ||||||||||||||| | ||| ||||| |||||||| | || |||||
Sbjct 1381 TTACATACAGAAGCTGACCAAGTTGTTATACACAGAGATATCAAAGCTGCAAATGTTATG 1440
Query 1567 TTAGACGCGGAGTTCCATGGAAGGTTAGGG-GATTTTGGCATGGCCAGGTT-TCATGAGC 1624
|| ||||| |||||| |||||||||| ||| |||||||| ||| ||||||| | |||| |
Sbjct 1441 TTGGACGCAGAGTTCAATGGAAGGTT-GGGTGATTTTGGTATGTCCAGGTTAT-ATGA-C 1497
Query 1625 ACG-GAGGC-AATGC-AGCTACAACAGCAGCTGTTGGG-ACTGTAGGGTACATGGCCCCG 1680
| | | ||| || | || ||||||||| || | |||| ||||| || |||||||| ||
Sbjct 1498 A-GAGGGGCTGATCCAAG-TACAACAGCTGCAG-TGGGAACTGTTGGTTACATGGCGCCT 1554
Query 1681 GAGCTAATC-ACAATGGGAGCTTCCACTGGAACTGATGTTTACGCATTTGGTGTTTTCAT 1739
||||| | | ||||||||||||||||||||||||||||| || || |||||||||||| |
Sbjct 1555 GAGCTTA-CAACAATGGGAGCTTCCACTGGAACTGATGTGTATGCGTTTGGTGTTTTCTT 1613
Query 1740 GCTTGAAGTAACCTGTGGGAGGAGACCCGTGGAACC-GCAGTTGCAAGTTG-AGAAACGA 1797
|||||||||||| |||||||||||||| |||||||| | | |||| | || | |||||
Sbjct 1614 GCTTGAAGTAACTTGTGGGAGGAGACCTGTGGAACCTGGA-TTGCCTGCTGCA-AAACGT 1671
Query 1798 CATATGATCAAATGGGTTTGTGAGTGCTGGAAAAAGGA-TTCTTTGCTTGATGCTACTGA 1856
|| |||||||||||||| |||| |||||||||| || ||||||| ||||||||| ||
Sbjct 1672 TATCTGATCAAATGGGTTAGTGAATGCTGGAAAA-GGTCTTCTTTGATTGATGCTAGAGA 1730
Query 1857 CCCGAGATTGGGAGGTAAATT-TGTAGCTGAGGAAGTCGAGATGGTTATGAAACTGGGTC 1915
|| || ||| || || || | | || |||||||||||| |||| ||||||| |||
Sbjct 1731 TCCAAGGTTGACAG--AA-TTCTC-ATCTCAGGAAGTCGAGAAGGTTCTGAAACTCGGTT 1786
Query 1916 TGCTCTGTTCAAATATAG-TGCCAGAATCCAGACCCACAATGGAACAAGTGGTCCTGTAC 1974
|||| ||| |||| | | | ||||| || ||||| | |||||||||||||| | |||
Sbjct 1787 TGCTATGTGCAAACCTTGCT-CCAGATTCAAGACCGGCCATGGAACAAGTGGTGCAATAC 1845
Query 1975 CTAAACAAAAACCTACCTTTGCCAGA-TTT 2003
||||| ||||||| ||||||| || |||
Sbjct 1846 TTAAACGGAAACCTAGCTTTGCCCGAGTTT 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94159085640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5