BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60320.1
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496169 jgi|Araly1|496169|fgenesh2_kg.8__1985__AT5G60320.1 2658 0.0
Ahg937203 jgi|Araly1|937203|scaffold_501394.1 1194 0.0
Ahg937206 jgi|Araly1|937206|scaffold_501397.1 508 5e-143
Ahg950784 jgi|Araly1|950784|scaffold_802671.1 409 5e-113
> Ahg496169 jgi|Araly1|496169|fgenesh2_kg.8__1985__AT5G60320.1
Length=1995
Score = 2658 bits (1439), Expect = 0.0
Identities = 1763/1920 (92%), Gaps = 20/1920 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGAAAGATTGCATCTGATCTTATTGGTCTTCTTTAATCATCTGACTTT-CTT 59
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1 ATGGCTTCTGAAAGATTGCATCTGATCTTATTGGTCATCTTTAATCATCTGA-TTTCCTT 59
Query 60 GTTAAGTCAACAAGAAGAAGCCGGTTTCATCTACAATGGCTTTGGCCAAGCTCAAGCTGG 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 60 GTTAAGTCAACAAGAAGAAGCCGGTTTCGTCTACAATGGCTTTGGCCAAGCTGAAACTGA 119
Query 120 TCTTCATCTAGACGGAGCTGCTAAAATCCTCTTTCCAGATGGATTGTTGCAGTTGACAAA 179
| |||||||||| |||||||| ||||| ||||| |||||||||||||||||| | || ||
Sbjct 120 TTTTCATCTAGATGGAGCTGCAAAAATTCTCTTCCCAGATGGATTGTTGCAGCTAACTAA 179
Query 180 TGCCTCAACACAACAAATGGGTCATGCTTTCTTCAAGAAACCATTCAAGTTTGATTCATA 239
||||| | || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 CGCCTCGTCGCAGCAAATGGGTCATGCTTTCTTCAAGAAACCATTCAAGTTCGATTCAT- 238
Query 240 T-GAGAAGAAACTCTCTTTTTCGACTCATTTTGTGTGTGCGCTTGTGCCTAAACCGGGAG 298
| || | |||||||||||| |||||||||||||||||||| || || |||||||| ||||
Sbjct 239 TCGATAGGAAACTCTCTTTCTCGACTCATTTTGTGTGTGCACTGGTTCCTAAACCTGGAG 298
Query 299 CTGATGGTGGCCATGGAATTGCCTTTGTTGTATCCTCTTCCATAGATTTCACACAAGCAG 358
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 299 CAGATGGTGGCCATGGAATCGCCTTTGTTGTATCTTCTTCCATAGATTTCACACAAGCAG 358
Query 359 ATCCAACTCAGTACTTGGGACTTTTAAACATCTCAACAAATGGATCTCCATCTTCTCAGC 418
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 359 ATCCAACTCAGTACTTGGGAGTTTTCAACATCTCAACAAATGGATCTCCTTCTTCTCAGC 418
Query 419 TTCTAGCTATTGAGCTCGATACTGTTGAGAGCGCAGAGTTTGATGATATCGACAAGAATC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTAGCTATTGAGCTCGATACTGTTGAGAGCGCAGAGTTTGATGATATCGACAAGAATC 478
Query 479 ATGTCGGTATAGACATCAAAAGCCTGAATTCTGTAGAGTCTGCTTCAGCTTCATACTTTT 538
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 479 ATGTCGGTATAGACATCAACAGCCTGAATTCTGTAGAGTCTGCTTCAGCTTCTTACTTTT 538
Query 539 CAAACGCCAAAGGGAAGAATCAAAGCATCAAGCTCTTAAGTGGAGACCCTATACAAATCT 598
|| || |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 539 CAGACACCAAAGGGAAGAATCAAAGCATAAAGCTCTTAAGTGGAGACCCTTTACAAGTCT 598
Query 599 GGGTGGATTATGAAGGAGCTTTACTCAATGTCACAGTGGCTCCTCTAAGTATCCAGAAAC 658
||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 599 GGGTGGATTATGAAGGAACTTTACTAAATGTCACAGTGGCTCCTCTAAGCATCCAGAAAC 658
Query 659 CAAACCATCCTCTTCTGTCAAGATCCATTAATCTCACTGACATCTTCCCGGATCGAA-AG 717
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 659 CAAACCATCCTCTTCTGTCAAGATCCATCAATCTCACTGAAATCTTCCCGGATCGAAGA- 717
Query 718 CTGTTTTTTGGATTTTCTGCAGCAACAGGAACATTAGTCAGTTACCAATATATCTTAGGA 777
|||||||| ||||| |||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 718 CTGTTTTTCGGATTCTCTGCATCAACAGGATCGTTAGTCAGTTACCAATATATCTTAGGA 777
Query 778 TGGAGTTTCAGCAGAAGCAGAATGTTGTTGCAGAGTCTGGACTTCTCAAAACTTCCTCAG 837
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 778 TGGAGTTTCAGCAGAAACAGAATGTTGTTGCAGAGACTTGACTTCTCAAAACTTCCTCAG 837
Query 838 ATTCCTCATCCAAAAGCCAAACAGGAGCAAACATCTCCACTGCTTATCGTTCTACTCATG 897
||||||||||||| ||||||| || ||||||||||||| |||||||||| ||||||| ||
Sbjct 838 ATTCCTCATCCAAGAGCCAAAAAGAAGCAAACATCTCCGCTGCTTATCGCTCTACTCGTG 897
Query 898 TTACTAGTACTCATAATGTTGGCTGTTCTTGGAGGAATTTACTTATACAGGAGAAAGAAG 957
||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 898 TTAATAGCACTCATAATGTTGGCCGTTCTTGGAGGAGTTTACTTATACAGGAGAAAAAAG 957
Query 958 TATGCAGAAGTTAGAGAAGTATGGGAAAAAGAATACAGTCCACACCGGTTTTCTTATAAA 1017
||||||||||| ||||||| |||||||||||||||| |||| || |||||||||||||||
Sbjct 958 TATGCAGAAGTCAGAGAAGCATGGGAAAAAGAATACGGTCCGCATCGGTTTTCTTATAAA 1017
Query 1018 TCTCTATACAAAGCAACAAACAGG-TTTGATAAAGACGGCCGTTTAGGAAAAGGCGGTTT 1076
|||||||||||||||||||| ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 1018 TCTCTATACAAAGCAACAAA-AGGGTTTGACAAAGATGGTCGTTTAGGAAAAGGCGGTTT 1076
Query 1077 TGGAGAAGTCTACAGAGGAAATCTGCCTCACGTTGGAGATATAGCGGTAAAAAGAGTGTG 1136
|||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||
Sbjct 1077 TGGAGAAGTCTACAGAGGAAATCTACCCCGCGTTGGAGATATAGCGGTAAAGAGAGTGTG 1136
Query 1137 CCACGATGCAAAGCAAGGCATGAAACAGTTTGTTGCTGAAGTAGTGACTATGGGAAGTTT 1196
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 CCACGATGCAAAGCAAGGCATGAAACAGTTTGTGGCTGAAGTAGTGACTATGGGAAGTTT 1196
Query 1197 AAAGCACCGGAATTTGGTTCCTCTTCTCGGGTACTGCAGGAGGAAAGGAGAGCTTCTTCT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 AAAGCACCGGAATTTGGTTCCTCTTCTCGGGTACTGCAGGAGGAAAGGAGAACTTCTTCT 1256
Query 1257 GGTTT-CTGAGTATATGTCTAATGGCAGTCTTGATCAATACTTGTTTCACAGAGAAAAA- 1314
||| | | |||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 GGTCTAC-GAGTATATGTGTAATGGCAGTCTTGATCAATACTTGTTTCACAGA-AAAAAT 1314
Query 1315 CCGGCTCTTTCATGGTCTCAAAGGCTTGTCATTTTGAAAGATATCGCTTCTGCTCTCAGT 1374
|| |||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1315 CCAGCTCTTTCATGGCCGCAAAGGCTAGTCATTTTGAAAGATATAGCCTCTGCTCTCAGT 1374
Query 1375 TACTTACACACAGGAGCTAACCAAGTTGTGTTACACAGAGATATAAAAGCTTCTAATGTC 1434
||| | || ||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 1375 TACCTGCATACAGGAGCTAATCAAGTTGTATTACACCGAGATATAAAAGCTTCTAATGTC 1434
Query 1435 ATGTTAGATTCTGAATT-CAATGGAAGGTTAGGAGATTTTGGAATGGCGAGGTTTGAAGA 1493
|||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1435 ATGTTAGATTCT-AATTTCAATGGAAGATTAGGAGATTTTGGAATGGCGAGATTTGAAGA 1493
Query 1494 TTATGGAGATAGCGTACCGGTAACAGCAGCTGTAGGCACAATGGGTTACATGGCACCTGA 1553
||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 1494 TTATGGAGATAGCTTACCTGCAACAGCAGCTGTAGGAACAATGGGTTACATGGCACCTGA 1553
Query 1554 GCTAACAACAATGGGAACTTCTACAAGAACAGATGTTTATGCATTTGGTG-TACTCATGC 1612
||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1554 GCTAACAACAATGAAAACTTGTACAAGAACAGATGTTTATGCATTTGGTGCTT-TCATGC 1612
Query 1613 TCGAAGTAACTTGTGGAAGAAGACCGTTGGATCCCAAGATTCCATCTGAGAAACGGCATT 1672
| ||||||| ||||||| | |||||||| |||||||||||| || |||||||||||||||
Sbjct 1613 TTGAAGTAAGTTGTGGACGGAGACCGTTAGATCCCAAGATTTCAGCTGAGAAACGGCATT 1672
Query 1673 TGATCAAATGGGTTTGTGATTGCTGGAGAAGGGACTCTATAGTTGATGCTATTGATACAA 1732
|||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| ||
Sbjct 1673 TGATCAAATGGGTTTGTGATTGCTGGAGAAGGGATTCTCTGGTTGATGCTATAGATAGAA 1732
Query 1733 GATTGGGAGGTCAATACTCGGTAGAAGAAACCGTAATGGTTCTGAAACTCGGATTGATCT 1792
||||||||||| ||||||| | ||| ||| | | ||| ||||| ||||| |||||| | |
Sbjct 1733 GATTGGGAGGTAAATACTCAGCAGAGGAAGCTGAAATTGTTCTAAAACTTGGATTGCTTT 1792
Query 1793 GCACAAACATTGTTGCAGAATCCAGACCAACCATGGAGCAAGTGATACAATACATCA-AC 1851
|||||||||| ||||||||||| ||||| |||||||| |||||| |||| ||||| | ||
Sbjct 1793 GCACAAACATGGTTGCAGAATCTAGACCCACCATGGAACAAGTGGTACAGTACAT-ATAC 1851
Query 1852 CAGAATCTCCCATTGCCAAATTTCTCACCAG-GTTCTCTAGGAATTGGAGTTTCTACTCC 1910
|||||| |||||||| ||||||||||||| || ||| |||||||||||||||| ||||
Sbjct 1852 TGGAATCTTCCATTGCCTAATTTCTCACCAGAGT-CTCCAGGAATTGGAGTTTCTGCTCC 1910
> Ahg937203 jgi|Araly1|937203|scaffold_501394.1
Length=2083
Score = 1194 bits (646), Expect = 0.0
Identities = 1483/1876 (79%), Gaps = 102/1876 (5%)
Strand=Plus/Plus
Query 83 GTTTCATCTACAATGGCTTTGGCCAAG-CTCAAGCTGGTCTTCATCTAGACGGAGCTGCT 141
|||||||||||||||||||| ||||| | ||| ||| |||| | || ||||| ||||
Sbjct 103 GTTTCATCTACAATGGCTTTAACCAAGAC-CAAACTGATCTTAACCTTGACGGCTCTGC- 160
Query 142 AAAATCCTCTTTCCAGATGGA-TTGTTGCAGTTGACAAATGCCTCAACACAACAA-ATGG 199
|||| || | ||||||| || |||||| | || || ||| |||| || ||| | ||
Sbjct 161 AAAA--GTC---CAAGATGGACTT-TTGCAGCTAACCAACGCCACAACTCAGCAACA-GG 213
Query 200 GTCATGCTTTCTTCAAGAAACCATTC-AAGTTTGATTCA-TATGAGAAGAAACTC--TCT 255
|||||||||||||||| | ||||||| || || | |||| | | || ||| |||
Sbjct 214 GTCATGCTTTCTTCAACAGACCATTCGAA-TTCGGTTCAGCGTCATCTCAATCTCTTTCT 272
Query 256 TTTTCGACTCATTTTGTGTGTGCGCTTGTGCCTAAACCGGGAGCTGATGGTGGCCATGGA 315
|| || |||||||| || || || ||||| ||||| ||||||| || |||||| |||||
Sbjct 273 TTCTCAACTCATTTCGTTTGCGCTCTTGTCCCTAAGCCGGGAGTTGTTGGTGGTCATGGG 332
Query 316 ATTGCCTTTGTTGTATCCTCTTCCATAGATTTCACACAAGCAGATCCAACTCAGTACTTG 375
||||| |||||| |||| ||||| || ||||| |||||||||||||||||||| || ||
Sbjct 333 ATTGCTTTTGTTCTATCATCTTCAATGGATTTTACACAAGCAGATCCAACTCAATATTTA 392
Query 376 GGACTTTTAAACATCTCAACAAATGGATCTCCATCTTCTCA-GCTTCTAGCTATTGAGCT 434
||||| || ||||||||||| ||||||||||| |||||||| | || |||||||||||||
Sbjct 393 GGACTCTTCAACATCTCAACTAATGGATCTCCTTCTTCTCATG-TTTTAGCTATTGAGCT 451
Query 435 CGATACTGTTGAGAGCGCAGAGTTTGATGATATCGACAAGAATCATGTCGGTATAGACAT 494
||||| || | |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 452 TGATACGGTCCAAAGCGCAGAGTTTGATGATATCGACAAAAACCATGTCGGGATAGACAT 511
Query 495 CAAA-AGCCTGAATTCTGTAGAGTCTGCTTCAGCTTCATACTT-TTCAAACGCCA-AAGG 551
||| ||||| | || || || |||||| ||||||| || || |||| || | ||||
Sbjct 512 -AAACAGCCTCCAGTCCGTTGAATCTGCTCCAGCTTCTTA-TTATTCAGAC-AGAGAAGG 568
Query 552 GAAGA-ATCAAAGCATCAAGCTCTTAAGTGGAGACCCTATACAAATCTGGGTGGATTATG 610
||||| | ||||| | || ||||| |||||| | ||||| || | ||| | |||||||
Sbjct 569 GAAGAGA-AAAAGCTTGAAACTCTTGAGTGGAAATCCTATTCAGGTATGGATTGATTATG 627
Query 611 -AAGGAGCTTTACTCAATGTCACAGTGGCTCCTCT-AAGTATCCAGAAACCAAACCATCC 668
|| | || |||||||||| || | || ||||| || || ||||| |||| | ||
Sbjct 628 AAAATA-CTCTACTCAATGTTACTTTAGCACCTCTAAAAAAT-CAGAAGCCAAGTAAGCC 685
Query 669 TCTTCTGTCAAGATCCATTAATCTCACTGAC-ATCTTCCCGGATCG-AAAGCTGTTTTTT 726
|||| |||||||| |||| |||||||| | | |||||||||||||| |||||| ||| |
Sbjct 686 TCTTTTGTCAAGAACCATCAATCTCACCG-CAATCTTCCCGGATCGAAAAGCT-TTTGTC 743
Query 727 GGATTTTCTGCAGCAACAGGAACATTAG-TCAGTTACCAATATATCTTAGGATGGAGTTT 785
|| ||||| || || || || |||| | | ||||| ||||| |||||||||||||||||
Sbjct 744 GGGTTTTCGGCTGCGACTGGTTCATT-GATTAGTTATCAATACATCTTAGGATGGAGTTT 802
Query 786 CAGCAGAAGCAGAATGTTGTTGCAGAGTCTGGACTTCTCAAAACTTCCTCA-GATTCCTC 844
||||||||||||| ||||||| |||||||| ||| |||| |||||||| || | ||||||
Sbjct 803 CAGCAGAAGCAGAGTGTTGTTACAGAGTCTTGACATCTCTAAACTTCC-CAAGGTTCCTC 861
Query 845 ATCCAAAAGCCAAACAGGAGCAAACATCTCCACTGCTTATCGTTCTACTCATGT-TACTA 903
||| || | |||| ||| |||||||||| |||||||| |||||||| | | ||||
Sbjct 862 GTCCCAA-G--AAACCTGAGAAAACATCTCCTCTGCTTATTGTTCTACTGGT-TATACTC 917
Query 904 GTACTCATAATGTTGGCTGTTCTTGGAGGAATTTACTTATACAGGAGAAAGAAGTATGCA 963
| ||||||| | | || ||||| |||||| |||| || ||||| |||||||||||||||
Sbjct 918 GCACTCATAGTAATCGCGGTTCTAGGAGGATTTTATTTCTACAGAAGAAAGAAGTATGCA 977
Query 964 GAAGTTAGAGAAGT-ATGGGAAAAAGAATACAGTCCACACCGGTT-TTCTTATAAATCTC 1021
||||||| ||| | ||||||||||||||| |||||| || || ||| ||| |||||
Sbjct 978 GAAGTTAAAGA-GCCATGGGAAAAAGAATATGGTCCACTTCG-TTATTCCTATGAATCTT 1035
Query 1022 TATACAAAGCAACAAACAGG-TTTGATAAAGACGGCCGT-TTAGGAAAAGGCGGTTTTGG 1079
||||||||||||||| ||| ||| | ||||| || ||| || |||||||||||||||||
Sbjct 1036 TATACAAAGCAACAAG-AGGGTTTAACAAAGAAGGTCGTCTT-GGAAAAGGCGGTTTTGG 1093
Query 1080 AGAAGTCTACAGAGGAAATCTGCCTCACGTTGGAGATATAGCGGTAAAAAGAGTGTGC-C 1138
|||||| || | ||||| |||||||| || |||||||||||||| || ||| | | | |
Sbjct 1094 AGAAGTATATAAAGGAAGTCTGCCTCTTGTAGGAGATATAGCGGTGAAGAGATTAT-CAC 1152
Query 1139 ACGATGCAAAGCAAGGCATGAAACAGTTTGTTGCTGAAGTAGTGACTATGGGAAGTTTAA 1198
| |||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 1153 ATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCTGAAGTTGTGACAATGGGAAGTTTAC 1212
Query 1199 AGCACCGGAATTTGGTTCCTCTTCTCGGGTACTGCAGGAGGAAAGGAGAGCTTCTT-CTG 1257
||||| |||| ||||||||||||||||||| || ||| | ||||| ||| || || |||
Sbjct 1213 AGCACAAGAATCTGGTTCCTCTTCTCGGGTATTGTAGGCGAAAAGGGGAG-TTATTGCTG 1271
Query 1258 GTTTCTGAGTATATGTCTAATG-GC-AGTC-TTGATCAATACTTGTTTCACAGAGAAAAA 1314
|||||| |||| ||| || | | || | |||||||||||||||||||||| || ||
Sbjct 1272 GTTTCTAAGTACATGG--AAGGAGGTAG-CGTTGATCAATACTTGTTTCACAGCGATCAA 1328
Query 1315 CCGGCTCTTTCATGGTCTCAAAGGCTTGTC-ATTTTGAAAGATATCGCTTCTGCTCTCA- 1372
||| ||||||| ||||||||||| || | | || |||| ||||||||| ||||| || |
Sbjct 1329 CCGCCTCTTTCTTGGTCTCAAAGACTCG-CGATATTGAGAGATATCGCATCTGCGCT-AT 1386
Query 1373 GTTACTTACACACAGGAGCTAACCAAGTTGTGT-TACACAGAGATATAAAAGCTTCTAAT 1431
||||||| || |||||||| | |||||||| | ||||| ||||||| ||||||||||||
Sbjct 1387 GTTACTTGCATACAGGAGCCAGTCAAGTTGT-TCTACACCGAGATATCAAAGCTTCTAAT 1445
Query 1432 GTCATGTTAGATTCTGAA--TT--CAATGGAAGGTTAGGAGATTTTGGAATGGCGAGGTT 1487
|||||||| || ||| || ||| || |||||||||||||| ||||| | |||
Sbjct 1446 ATCATGTTAAAT---GAAACTTTACAA-GGCTTCTTAGGAGATTTTGGGATGGCTAAGTT 1501
Query 1488 TGAAGATTATGGAGATAGCGTAC-CGGTAACAGCAGCTGTAGGCACAATGGGTTACATGG 1546
||| ||| |||||| || | | | | | |||||||||||||| || || || |||||||
Sbjct 1502 TGATGATCATGGAGCTAACCT-CTCTGCCACAGCAGCTGTAGGAACCATAGGCTACATGG 1560
Query 1547 CAC-CTGAGCTAACAACAATGGGAACTTCTACAAGAACAGATGTTTATGCATTTGGTGTA 1605
| | | ||||||||||||| |||||||| |||||||| ||||| ||||||||||||| |
Sbjct 1561 CGCTC-GAGCTAACAACAACAGGAACTTCAACAAGAACCGATGTGTATGCATTTGGTGCA 1619
Query 1606 CTCATGCTCGAAGTAACTTGTGGAAGAAGACCGTTGGATCCC-AAGATTCCA-TCTGAGA 1663
| ||||| |||||||| ||||| || ||||| || |||||| || || || || ||||
Sbjct 1620 TTTATGCTTGAAGTAACATGTGGGAGGAGACCATTTGATCCCGAA-ATGCCGGTC-GAGA 1677
Query 1664 AACGGCATTT-GATCAAATGGGTTTGTGATTGCT-GGAGAAG-GGACTCTATAGTTGATG 1720
|||| ||||| | |||| ||||||||||| | || |||||| || ||| |||| |||
Sbjct 1678 AACGACATTTAG-TCAAGTGGGTTTGTGAAT-CTTGGAGAAAAGGT-TCTCTAGTCAATG 1734
Query 1721 CTATTGATACAAGATTGGGAGGTCAATACTCGGTA---GAAGAAACCGTAATGGTTCTGA 1777
|||| |||||||||||| ||||| ||| ||| || || ||| || |||||||||||
Sbjct 1735 CTATAGATACAAGATTGAGAGGTAAAT--TCG-TACCCGAGGAAGTCGAAATGGTTCTGA 1791
Query 1778 AACTCGGATTGA-TCTGCACAAACATTGTTGCAGAATCCAGACC-AACCATGGAGCAAGT 1835
||||||| || | |||| |||| |||| | ||||| | ||||| ||| ||||| |||||
Sbjct 1792 AACTCGGGTT-ACTCTGTACAAGCATTATACCAGAAGCAAGACCTAAC-ATGGAACAAGT 1849
Query 1836 GATACAATACATCAACCAGA-ATCTCCCATTGCCAAATTTCTCACCAGGTTCTCTAGGAA 1894
| | |||||||| ||| ||| | | |||||| | ||||| |||| | ||| || |
Sbjct 1850 GGTGCAATACATAAAC-AGACACCAAAGATTGCCTGAGTTCTCTCCAGATACTCCCGGGA 1908
Query 1895 TTGGAGTTTCTACTCC 1910
| |||||||| |||||
Sbjct 1909 TCGGAGTTTCAACTCC 1924
> Ahg937206 jgi|Araly1|937206|scaffold_501397.1
Length=2046
Score = 508 bits (275), Expect = 5e-143
Identities = 777/1011 (77%), Gaps = 68/1011 (7%)
Strand=Plus/Plus
Query 922 GTTCTTGGAGGAATTTACTTATACAGGAGAAAGAAGTATGCAGAAGTTAGAGAAGT-ATG 980
||||| |||||| |||||| ||||| |||||||||||||||||||| |||||| | ||
Sbjct 948 GTTCTCGGAGGAGTTTACTGGTACAGAAGAAAGAAGTATGCAGAAGTAAGAGAA-TCGTG 1006
Query 981 GGAAAAAGAATACAGTCCACACCGGTTTTCTTATAAATCTCTATACAAAGCAACAAACAG 1040
|||||| |||||| | |||||||| | ||| || || ||||| |||||||||||||| |
Sbjct 1007 GGAAAAGGAATACGGCCCACACCGATATTCCTACAAGTCTCTGTACAAAGCAACAAATGG 1066
Query 1041 GTTTGAT-AAAGACGGC-CGTT-TAGGAAAAGGCGGTTTTGGAGAAGTCTACAGAGGAAA 1097
||||| | ||||| || | || | || ||||| || |||||| |||| |||| |||||
Sbjct 1067 GTTTG-TCAAAGA-TGCTC-TTGTTGGGAAAGGTGGGTTTGGAAAAGTTTACAAAGGAAC 1123
Query 1098 TCTGCC-TCACGTTG-GAG-ATATAGCGGTAAAAAGAGTGTGCCACGATGCAAAGCAAGG 1154
|||||| ||| | | || ||||||| || |||||| | | ||| |||||| |||||||
Sbjct 1124 TCTGCCTTCA-G--GCAAGCATATAGCTGTGAAAAGACTATCCCATGATGCAGAGCAAGG 1180
Query 1155 CATGAAACAGTTTGTTGCTGAAGTAGTGACTATGGGAAGTTTA-AAGCACCGGAATTTGG 1213
|||||||||||||| || ||||| || || ||||||| |||| || || || || ||||
Sbjct 1181 GATGAAACAGTTTGTGGCAGAAGTCGTAACGATGGGAAATTTACAA-CATCGCAACTTGG 1239
Query 1214 TTCCTCTTCTCGGGTACTGCAGGAGGAAAGGAGAGCTT-CTTCTGGTTTCTGAGTATATG 1272
|||||||||| ||||| || || || ||||| ||| || || ||||| |||||||| |||
Sbjct 1240 TTCCTCTTCTTGGGTATTGTAGAAGAAAAGGTGAG-TTGCTACTGGTCTCTGAGTACATG 1298
Query 1273 TCTAATGGCAGTCTTGATCAATACTTGTTTCACAGA-GAAAAACCGGCTCTTTCATGGTC 1331
| || || |||||||| || ||||||||| | | |||| || ||||||||||||
Sbjct 1299 CCCAACGGTAGTCTTGACCAGTACTTGTTTTGTA-ACCAAAACCCATCTCTTTCATGGT- 1356
Query 1332 T-CAAAGGCTTGTC-ATT-TTGAAAGATATCGCTTCTGCTCTCAGTTACTTACACACAGG 1388
| ||||| || || ||| || || || ||||| || ||||||| |||| | || |||||
Sbjct 1357 TGCAAAGAATT-TCTATTCTT-AAGGACATCGCCTCGGCTCTCAATTACCTGCATACAGG 1414
Query 1389 AGCTAA-CCAAGTTGTGTTACACAGAGATATAAAAGCTTCTAATGTCATGTTAGATTCTG 1447
||| || || || ||| || ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1415 AGCCAATCC-AGCTGTTTTGCACCGGGATATAAAAGCTTCTAATGTCATGTTAGATTCTG 1473
Query 1448 AAT-TCAATGGAAGGTTAGGAGATTTTGGAATGGCGAGGTTTGAAGATTATGGAGATAGC 1506
| | | |||||||| |||||||||||||| ||||| | |||| | || || | |
Sbjct 1474 AGTAT-AATGGAAGATTAGGAGATTTTGGTATGGCCAAGTTTCAGGACCCCCAAGCGAAC 1532
Query 1507 GTACCGGTAACAGCAGCTGTAGGCACAATGGGTTACATGGCACCTGAGCTAACAACAA-T 1565
|| | | |||||| ||||| || || || |||||||||||||||||||||| || || |
Sbjct 1533 CTATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCACCTGAGCTAATAAGAACT 1592
Query 1566 GGGAACTTCTACAAGAA-CAGATGTTTATGCATTTGGTGTACTCATGC-TCGAAGTAACT 1623
|| |||||||| ||||| | ||||| ||||| |||||||| || | | | |||||||||
Sbjct 1593 GG-AACTTCTA-AAGAAACTGATGTGTATGCCTTTGGTGTTTTCCTTCAT-GAAGTAACT 1649
Query 1624 TGTGGAAGAAGACCGTTGGATCCCA-AGATT-CCATCTG-AGAAACGGCAT-T-TGATCA 1678
|||||||| |||| || || || | || || ||| | | | ||| | || | || |||
Sbjct 1650 TGTGGAAGGCGACCTTTTGAACC-AGAG-TTGCCAGC-GCA-AAA-GAAATATCTGGTCA 1704
Query 1679 AATGGGTTTGTGATTGCTGGAGA-AGGGACT-CTATAGTTGATG-CTATTGATACAAGAT 1735
| |||||||| || ||||||| | | | || || || | | | | | ||| ||| ||
Sbjct 1705 AGTGGGTTTGCGAATGCTGGAAACATG--CTTCTTTACTCAA-GACCAGAGATCCAAAAT 1761
Query 1736 TGGGAGGTCAATACTCGGTA---GAAGAAACCGTAATGGTTCTGAAACTCGGATTGATCT 1792
||||| | ||| ||| || |||||| || ||||||| ||||||| || ||| |||
Sbjct 1762 TGGGAAGAGAAT--TCG-TATCCGAAGAAGTCGAAATGGTTTTGAAACTTGGGTTGCTCT 1818
Query 1793 GCACAAAC-ATTGTTGCAGAATCCAGACCA-ACCATGG-AGCAAGTGATACAATACATCA 1849
||||||| || ||| ||||||| || || || |||| | |||||||| |||||| | |
Sbjct 1819 GCACAAATGAT-GTTCCAGAATCAAGGCCTGAC-ATGGGA-CAAGTGATGCAATACCT-A 1874
Query 1850 A-CCAGAATCT-CCCATTGCCAAATTTCTCACCAGGTTCTCTAGGAATTGG 1898
| || ||| | ||| || || |||||||||||| ||||| ||| |||||
Sbjct 1875 AGCCGGAAACAACCC-TTACCGGATTTCTCACCAGATTCTCCAGGTATTGG 1924
> Ahg950784 jgi|Araly1|950784|scaffold_802671.1
Length=1781
Score = 409 bits (221), Expect = 5e-113
Identities = 916/1236 (74%), Gaps = 109/1236 (9%)
Strand=Plus/Plus
Query 249 ACTCTCTTTTTCGACTCATTTTGTGTGTGCGCT-T-GTGCCTAAACCGGGAGCTGATGGT 306
|||||| || || || |||||||| | |||||| | |||||| | || |||| ||| ||
Sbjct 180 ACTCTCCTTCTCAACACATTTTGT-T-TGCGCTCTAGTGCCTCAGCCTGGAGTTGAAGGC 237
Query 307 GGCCATGGAATTGCCTTTGTTGTATCCT-CTTCCATAGATTTCACACAAGCAG-ATCCAA 364
|| |||||||| |||||||| |||| || |||| || |||||| | || |||| || |||
Sbjct 238 GGTCATGGAATGGCCTTTGTAGTAT-CTCCTTCAATGGATTTCTCGCATGCAGAAT-CAA 295
Query 365 CTCAG-TACTT-GGGACTTTTAAACATCTCAACAAATGGATCTCCATCTTCTCA-GCTTC 421
|| || ||||| |||| |||| ||| | |||| |||||||||||| |||||||| | | |
Sbjct 296 CT-AGATACTTGGGGA-TTTTCAACGTGTCAAAAAATGGATCTCCCTCTTCTCATG-TGC 352
Query 422 TAGCTATTGAGCTCGATACT-GTTGAGAGCGCAGAGTTTGATGATATCGACAAGAATCAT 480
| ||| ||||||| || ||| ||| || | | || ||||| ||||||||| | ||||||
Sbjct 353 TTGCTGTTGAGCTTGACACTATTTG-GAACCCGGATTTTGAAGATATCGACCACAATCAT 411
Query 481 GTCGGTATAGACATCAAAAG-CCTGAAT-TCTG-TAGAGTCTGCTTCAGCTTCATACTTT 537
|| || || || | || || ||| | || | | || | ||||| || || ||||||
Sbjct 412 GTGGGGATTGATGTGAACAGTCCT--CTGTCGGATGGAAT-AGCTTCGGCATCTTACTTT 468
Query 538 TCAAACGCCAAAG-GGAAGAATC-AAAGCATCAAGCTCTTAAGTGGAGACCCTA-TACAA 594
|| || |||| ||||||| | ||||||| || ||||| |||||| |||| | ||||
Sbjct 469 TCCGAC-ATAAAGCGGAAGAA-CGAAAGCATAAACCTCTTGAGTGGAAACCC-ATTACAG 525
Query 595 ATCTGGGTGGATTATGAAGGAGC--TTTACTCAATGTCACAG-TGGCTCC-TCT-AAGTA 649
| ||||| ||||||||| || | | | |||||||| | | ||||||| | | |||
Sbjct 526 GTTTGGGTTGATTATGAA-GA-CAATATGCTCAATGTTTC-GATGGCTCCTTGTGAAG-- 580
Query 650 TCCAGAAACCAA-AC-CAT--CCTCTTCTGTCA-AGATCCATTAATCTCACTGACATCTT 704
||||||| |||| | | | |||||| ||||| | | |||| ||||| | || || ||
Sbjct 581 TCCAGAAGCCAAGTCGC-TCGCCTCTTTTGTCACA-ACCCATCAATCTTTCAGATATTTT 638
Query 705 CCCGGATCGA-AAG-CTGTTTT-TTGGATTTTCTGCAGCAACAGGAACA-TTAGTCAGTT 760
||| | | | ||| || |||| |||| || |||||||||||||| ||| || ||||||
Sbjct 639 CCC-AAAC-AGAAGACT-TTTTGTTGGGTTCTCTGCAGCAACAGGGACAGCTA-TCAGTT 694
Query 761 ACCAATATA-TCTTAGGATGGAGTTTCAGCAGAAGCAGAATG-TTGTTGCAGAGTCTGGA 818
| ||||||| |||| | |||||||| |||| |||||| | | | ||||| | || ||
Sbjct 695 ATCAATATATTCTTTCG-TGGAGTTTTAGCACAAGCAG-AGGATCACTGCAGCGACTTGA 752
Query 819 CTTCTCAAAACTTCCT-CAGATTCCTCATCCAAAAGCCAAACAGGAGCAAAC-ATCTCCA 876
| |||||| ||| ||| || |||| ||||| | ||| |||| || || | ||||||
Sbjct 753 CATCTCAAGACTACCTGAAG-TTCCACATCCTAGAGCTGAACATAAG-AACCTATCTCCG 810
Query 877 CTGCTTATCGTTCTAC-TCATGTTACTAG-TACTCATAATG-TTGGCTGT--TCTTGGAG 931
||| |||| || || | | | || || | || |||| | || | ||| |||| |
Sbjct 811 CTGTTTATTGTCCTGCTTGGT-TTTCTGGCTA-TCAT-GGGCTT-G-TGTACTCTTACTG 865
Query 932 GAATTTACTTATACAGGAGAAAG-AAGTATGCAGAAGTTAGAGAAGTATGGGAAAAAGAA 990
|||| ||||| | ||||| || |||||||||||||| | |||| ||||||||| |||
Sbjct 866 GAATGTACTTTTTTAGGAG-GAGCAAGTATGCAGAAGTAACCGAAGCATGGGAAAAGGAA 924
Query 991 TACAGTCCACACCGGTTTTCTTATAAAT-CTCTATACAAAGCAACAAACA-GGTTTGATA 1048
| || |||| || || ||||| |||| || | |||||||||||||| | ||||| | |
Sbjct 925 TTTGGTGCACATCGATTCTCTTACAAATCCT-TGTACAAAGCAACAAA-AGGGTTTAACA 982
Query 1049 AAGACGGCCGTT-TAGGAAAAGGCGGTTTTGGAGAAGTCTACAGAGGAAATCTGCCT--C 1105
| || || || | |||| ||| ||||||||||||||||||||||||||||| | | |
Sbjct 983 AGGATGG-ATTTCTTGGAAGAGGAGGTTTTGGAGAAGTCTACAGAGGAAATCT-CTTTTC 1040
Query 1106 ACGTTGGAGATATAGCGGTAAAAAGAGTGTGC-CACGATGCAAAGCAAGGCATGAAACAG 1164
| | ||| ||||| || || ||| ||| | || || | | ||||| |||| ||
Sbjct 1041 AAACAG-AGAAATAGCTGTGAAGAGAATGT-CACATGACGGTGATCAAGGTGTGAAGCAA 1098
Query 1165 TTTGTTGCTGAAGTAGTGA-CTATGGGAAGTTT-AAAGCACCGGAAT-TTGGTTCCTCTT 1221
||||| |||||||| |||| | ||| || || | ||| ||| ||||| ||| |||| |||
Sbjct 1099 TTTGTGGCTGAAGTCGTGAGC-ATGAGATGTCTGAAA-CACAGGAATCTTG-TTCCGCTT 1155
Query 1222 CTCGGGTACTGCAGGAGGAAAGGA-GAGCTTCTTCTGGTTTCTGAGTATATGTCTAATGG 1280
|| ||||| |||||||| ||| | ||| ||||||| || |||||||| ||| | |||||
Sbjct 1156 CTTGGGTATTGCAGGAGAAAAC-ATGAGTTTCTTCTTGTCTCTGAGTACATGCCCAATGG 1214
Query 1281 CAGTCTTGATCAAT-ACTTGTTTCACAGAGAA-AAACCGGCT-CTTTCATGGTCT-CAAA 1336
|||||||| | | | |||||| | || | ||||||| | ||||| ||| | ||||
Sbjct 1215 TAGTCTTGA-CGAGCATTTGTTTGAT-GACCAGAAACCGG-TACTTTCTTGG-CGACAAA 1270
Query 1337 GGCTTGTCATT-TTGAAAGATATCGC-T-TCTGCTCTCAGTTAC-TTACACACAGGAGCT 1392
| ||||| ||| || || | ||| || | ||||| ||| ||||| || || ||||| ||
Sbjct 1271 GACTTGTGATTATT-AAGGGTATTGCATATCTGCACTCTGTTACCTT-CATACAGGTGCG 1328
Query 1393 AACCAAGTTGTGT-TACACAGAGATATAAAAGCTTC 1427
|||||||||| | | ||| ||||||| ||||||||
Sbjct 1329 GACCAAGTTGT-TCTGCACCGAGATATCAAAGCTTC 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76256670490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5