BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60330.1
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1 425 1e-118
> Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1
Length=427
Score = 425 bits (230), Expect = 1e-118
Identities = 288/313 (92%), Gaps = 15/313 (5%)
Strand=Plus/Plus
Query 208 ACCAAAGGTTACAACTTCATGTGGATTGTTCAGTCACCAAAATCC------AAAGAG--A 259
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 115 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAAAATCCAAAGAGAAAGAGAAA 174
Query 260 -ATCATCATCACACGAATGTCGC-A--AC-A-A-CTACTACCACTGCTTCTTCTTGTTCA 312
| ||||||||||||||||||| | || | | ||||||||||| |||||| |||||||
Sbjct 175 GAGAATCATCACACGAATGTCGCAACTACTACACCTACTACCACTACTTCTTGTTGTTCA 234
Query 313 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTAGATGAGTACGAGATTAGG 372
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 235 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTGGATGAGTACGAGATTAGG 294
Query 373 ATTGTGATTGGTGCTGATGGTCCTAAAAGTCCAAAGGATGGATCTTCTGCAAAGCCTTTG 432
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 295 ATTGTGATTGGTGCTGATGGTCCTAGAAGTCCAAAGGATGGATCTTCTGCAACGCCTTTG 354
Query 433 GAGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 414
Query 493 CCTGTTGCTGCTT 505
| |||||||||||
Sbjct 415 CATGTTGCTGCTT 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18429149487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5