BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60330.1 Length=507 Score E Sequences producing significant alignments: (Bits) Value Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1 425 1e-118 > Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1 Length=427 Score = 425 bits (230), Expect = 1e-118 Identities = 288/313 (92%), Gaps = 15/313 (5%) Strand=Plus/Plus Query 208 ACCAAAGGTTACAACTTCATGTGGATTGTTCAGTCACCAAAATCC------AAAGAG--A 259 ||||||||||||||| ||||||||||||||||||||||||||||| |||||| | Sbjct 115 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAAAATCCAAAGAGAAAGAGAAA 174 Query 260 -ATCATCATCACACGAATGTCGC-A--AC-A-A-CTACTACCACTGCTTCTTCTTGTTCA 312 | ||||||||||||||||||| | || | | ||||||||||| |||||| ||||||| Sbjct 175 GAGAATCATCACACGAATGTCGCAACTACTACACCTACTACCACTACTTCTTGTTGTTCA 234 Query 313 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTAGATGAGTACGAGATTAGG 372 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 235 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTGGATGAGTACGAGATTAGG 294 Query 373 ATTGTGATTGGTGCTGATGGTCCTAAAAGTCCAAAGGATGGATCTTCTGCAAAGCCTTTG 432 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 295 ATTGTGATTGGTGCTGATGGTCCTAGAAGTCCAAAGGATGGATCTTCTGCAACGCCTTTG 354 Query 433 GAGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 492 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 GGGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 414 Query 493 CCTGTTGCTGCTT 505 | ||||||||||| Sbjct 415 CATGTTGCTGCTT 427 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18429149487 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5