BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60335.1 Length=501 Score E Sequences producing significant alignments: (Bits) Value Ahg496171 jgi|Araly1|496171|fgenesh2_kg.8__1987__AT5G60340.1 782 0.0 > Ahg496171 jgi|Araly1|496171|fgenesh2_kg.8__1987__AT5G60340.1 Length=1041 Score = 782 bits (423), Expect = 0.0 Identities = 455/471 (97%), Gaps = 0/471 (0%) Strand=Plus/Plus Query 12 GACAGTTTTCCCTAGAGGTCTCCTTGTTTTGAGAAGTTTCTCATCAGTTGCTTCAAAGAC 71 |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| Sbjct 555 GACAGTTTTCCCTACAGGTCTCCTTGTTTTGAGGAGCTTCTCATCAGTTGCTTCAAAGAC 614 Query 72 ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATATTAA 131 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 615 ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATGTTAA 674 Query 132 GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG 734 Query 192 TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGGATGCTTGTTTCTTCCATGTTTCCTCG 251 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 735 TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGCATGCTTGTTTCTTCCATGTTTCCTCG 794 Query 252 TATCATCTCTGCCCATTTCCCTGGAGCAGTATACGTATCTCAAAGTCTGCATTTTCGGTC 311 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 795 TATCATCTCTGCCCAATTCCCTGGAGCAGTATATGTATCTCAAAGTCTGCATTTTCGGTC 854 Query 312 ACCGGTTTACATAGGTGATGAAATTCTTGGATTGGTTCAAGCCATAGCTTTAAGAGAAAC 371 |||||||||| |||||||||||||||| ||| | |||||||| ||||||||||||||||| Sbjct 855 ACCGGTTTACGTAGGTGATGAAATTCTCGGACTAGTTCAAGCAATAGCTTTAAGAGAAAC 914 Query 372 CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCTTCAAGAACCACAACGAACTTGT 431 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 915 CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCCTCGAGAACCACAACGAACTTGT 974 Query 432 TGTTATTGATGGTGAAGCTACTGCAATTTTACCAAACCTTGACATGTTGCA 482 ||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 975 TGTTATTGATGGTGAAGCTACTGCAGTTTTACCAAACCTTGAGATGTTGCA 1025 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18200215953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5