BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G60335.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496171 jgi|Araly1|496171|fgenesh2_kg.8__1987__AT5G60340.1         782    0.0  


> Ahg496171 jgi|Araly1|496171|fgenesh2_kg.8__1987__AT5G60340.1
Length=1041

 Score =  782 bits (423),  Expect = 0.0
 Identities = 455/471 (97%), Gaps = 0/471 (0%)
 Strand=Plus/Plus

Query  12    GACAGTTTTCCCTAGAGGTCTCCTTGTTTTGAGAAGTTTCTCATCAGTTGCTTCAAAGAC  71
             |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct  555   GACAGTTTTCCCTACAGGTCTCCTTGTTTTGAGGAGCTTCTCATCAGTTGCTTCAAAGAC  614

Query  72    ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATATTAA  131
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  615   ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATGTTAA  674

Query  132   GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG  191
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  675   GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG  734

Query  192   TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGGATGCTTGTTTCTTCCATGTTTCCTCG  251
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  735   TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGCATGCTTGTTTCTTCCATGTTTCCTCG  794

Query  252   TATCATCTCTGCCCATTTCCCTGGAGCAGTATACGTATCTCAAAGTCTGCATTTTCGGTC  311
             ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  795   TATCATCTCTGCCCAATTCCCTGGAGCAGTATATGTATCTCAAAGTCTGCATTTTCGGTC  854

Query  312   ACCGGTTTACATAGGTGATGAAATTCTTGGATTGGTTCAAGCCATAGCTTTAAGAGAAAC  371
             |||||||||| |||||||||||||||| ||| | |||||||| |||||||||||||||||
Sbjct  855   ACCGGTTTACGTAGGTGATGAAATTCTCGGACTAGTTCAAGCAATAGCTTTAAGAGAAAC  914

Query  372   CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCTTCAAGAACCACAACGAACTTGT  431
             ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  915   CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCCTCGAGAACCACAACGAACTTGT  974

Query  432   TGTTATTGATGGTGAAGCTACTGCAATTTTACCAAACCTTGACATGTTGCA  482
             ||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  975   TGTTATTGATGGTGAAGCTACTGCAGTTTTACCAAACCTTGAGATGTTGCA  1025



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5