BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60370.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496175 jgi|Araly1|496175|fgenesh2_kg.8__1991__AT5G60370.1 2143 0.0
Ahg948446 jgi|Araly1|948446|scaffold_800333.1 187 2e-46
> Ahg496175 jgi|Araly1|496175|fgenesh2_kg.8__1991__AT5G60370.1
Length=1528
Score = 2143 bits (1160), Expect = 0.0
Identities = 1407/1521 (93%), Gaps = 37/1521 (2%)
Strand=Plus/Plus
Query 37 CCGAGTCAACCTCCGACTCGCTTAGCACCACCACATCCACTAAGCCCGCTCAATCCGGGA 96
|||||||| ||||||| ||||||| ||| ||||||||||||||||||||| |||||| ||
Sbjct 23 CCGAGTCACCCTCCGAGTCGCTTACCACGACCACATCCACTAAGCCCGCTGAATCCGAGA 82
Query 97 CTGTTTCTATTTCAAGCCCTCAAAGTCACCATGTCGTCTTCCCCGAGATCCCAATCGAGA 156
||||| ||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 83 CTGTTGCTATTTCAAGCCCTCAAAGTCACCA--T-GTCTGCCCCGAGATCCCAATCGAGA 139
Query 157 TCGTCAGTGAAGAAGAAATGGCTATTCTCGATGCAGCTCTTGCAGCCTCCCGCTCCATCC 216
|| ||||||||||||||||||||||| |||||||||| ||||||||| | ||||| |||
Sbjct 140 TCATCAGTGAAGAAGAAATGGCTATTATCGATGCAGCGCTTGCAGCCACGCGCTCAATCT 199
Query 217 TCCCTTCCGTGATCCGTTCTGTTTCTCCGTCACGGATAAC-CGCCGGCGGAAGTCCCAAA 275
||||||| | ||||||||| | |||||| ||||| || | |||||||| || |||||
Sbjct 200 TCCCTTCTGCGATCCGTTCGGCTTCTCCATCACGAAT-TCTCGCCGGCGAAAACCCCAAG 258
Query 276 ACAATCCGCTCAATTACTCTCTTCTCCAAGAGGAAATTATCGGCTTGTTCAGATATCGAA 335
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATGATCCGTTCAATTACTCTTTTCTCCAAGAGGAAATTATCGGCTTGTTCAGATATCGAA 318
Query 336 GAGTCTTATCTACATCGATTTAGGAGAAATCAAGCTTTAGGTGTCACAGATCTCACCGGA 395
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GAGTCTTATTTGCATCGATTTAGGAGAAATCAAGCTTTAGGTGTCACAGATCTCACCGGC 378
Query 396 ACTGAATGGTGTGAGAAACAAATGGAGAATGTTCTTTGTTTTGGCAGGAGAAAAGTCAAT 455
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACGGAATGGTGTGAGAAACAAATGGAGAATGTTCTTTGTTTTGGCAGGAGAAAAGTCAAT 438
Query 456 AAAGCTATGAAAGTTGGTCAGGCTCGTCATTTGCAGCTTGAAGAAGAGGTAGTTAAAAAA 515
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AAAGCAATGAAACTTGGTCAGGCTCGTCATTTGCAGCTTGAAGAAGAGGTAGTTAAAAAG 498
Query 516 GTGAGAGTAAAAGTTGAATCAAATGAAGATAAGTGGGCATTGAAGCTGTTGAATTCCATT 575
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 499 GTGAGAGTAAGAGTTGAATCAAATGAAGATAAGTGGGCATTGAAGCTCTTAAATTCCATC 558
Query 576 GCTGGTGTTAATCAGTTCTTGTTTGAAGGACGAACTCGTGAATTGCTACTCTTAGGATTT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GCTGGTGTTAATCAGTTCTTGTTTGAAGGACGAACTCGTGAATTGCTACTCTTAGGATTT 618
Query 636 GTTGGAGGTCAATGGATTGTGGGAATTATTGACGAGCTTAGAAAGGCGTATGCAGAAGAG 695
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||
Sbjct 619 GTTGGAGGTCAATGGATTGTGGGAATTATTGATGAGCTTAGAAGGGCGTACGCAGAGGAA 678
Query 696 TCTTCTGATAGCGGACCAATATTGATAGATACAAAGACTCGACTCCGTGATACACTTCCA 755
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 679 TCTTCTGATACCGGACCAATATTGATAGATACAAAGACTCGACTCCGTGATACACTCCCA 738
Query 756 GCTGAGCCACAGAGGAGGAATGGAAGGCTTCAGCTAATGCTTTACAAGCTTCTATGGGAC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GCTGAGCCACAGAGGAGGAATGGAAGGCTTCAGCTAATGCTTTACAAGCTTCTATGGGAC 798
Query 816 ACTATTGTGAAAGAAGGGTTTCCAACGGGACCTTTTTTCGACTACTTTTCTTTGAATCG- 874
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 799 ACTATTGTGAAAGAAGGGTTCCCGACGGGACCTTTTTTCGACTACTTCTCTTTGAATCGA 858
Query 875 CAATTATGTCTTATCCCAAGATGTCAGAGATCACATTGCTAATGCAGGTATCAAAGCTCA 934
|| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 859 CA-TTATATCTTATCCCAAGATGTCAGAGATAACATTGCTAATGCAGGTATCCAAGCTCA 917
Query 935 GACACTTGAAGAGATAGTTAGGTACTATGAAAACACTTTTCAGATGCTTCCGATAGCAAA 994
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 918 GACACTTGAAGAGATAGTTAGGTACTATGAAAACACTTTTAAGATGCTTCCTCTAGCAAA 977
Query 995 TAATCAACTATTACTAAAGTACGAGTTTCAGAAGGACCAATCTATAATAGCTGAAATTAG 1054
| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 978 TGATCAACTATTACTAAAGTACGAGTTTCAGAAGGACCAATCTATAATAGCTGAGATAAG 1037
Query 1055 ATTCAACCATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCTGGAG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATTCAACCATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCTGGAG 1097
Query 1115 AAATGAACGAGAAGCTGGGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCA 1174
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AAATGAACGAGAAGCTGAGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCA 1157
Query 1175 ATTTGCTAAGTCTTGCCCTGGAAACCCGAGTTTCGAATCTCCTAGCACAAGCTCACCAAC 1234
|||||| ||||||||||||||||| |||||||| |||||||||||| | ||||||||| |
Sbjct 1158 ATTTGCCAAGTCTTGCCCTGGAAATCCGAGTTTTGAATCTCCTAGCCCGAGCTCACCACC 1217
Query 1235 AAGAGAGGCT-C-C-TCCTTTACCAAGCTAAAAAGAAGATGAAAAGTTGATTCTTTCACC 1291
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AAGAGAGGCTTCTCCTCCTTTACCAAGCTAAAAAGAAGATGAAAAGTTGATTCTTTCACC 1277
Query 1292 GAAAGCTGCTAAATGCTAACATATATGTTTGTGTTGTCTTTAATTTCCACATTTGCTTCC 1351
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1278 GAAAGCTGCTAAATGCTAACACATATGTTTGTCTCGTCTTTAATTTCCACATTTGCTTCC 1337
Query 1352 CT-T--A----AA-TTGCATAGCAGTTAAGTGATTAAACCGTGGTTTGATTAGGGTTGGT 1403
|| | | || |||||||||||||||||||||||||||||||||| ||||| | | |
Sbjct 1338 CTCTTCATTTTAAATTGCATAGCAGTTAAGTGATTAAACCGTGGTTTGGTTAGG-T-G-T 1394
Query 1404 TAGGCGTACCAAGATTGATTTGTACCGGGATGCCGCAATTTGATTATTGTGTATC--GTT 1461
| | | ||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1395 -A--C---C-AAGATTGATTTGTACCGGGATGCCGCAATTTGATTATCGCGTATCCCGTT 1447
Query 1462 TCCAACACACGCTTTGTAT---GTAT----CATCATTGTTGGAATCTCTAAGGTAATCGA 1514
||||| ||||||||||||| |||| ||||||| ||||||||| ||||||||||||
Sbjct 1448 TCCAATACACGCTTTGTATAATGTATGTATCATCATTATTGGAATCTGTAAGGTAATCGA 1507
Query 1515 CAATAGCATTTTTACGTTCTG 1535
||||||| |||||||||||||
Sbjct 1508 CAATAGCCTTTTTACGTTCTG 1528
Score = 65.8 bits (35), Expect = 9e-10
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 3 GTTGGTTCCGAATAAAACATGGCCGAGTCACCCTCCGAGTC 43
|||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 GTTGCTTCCGCATAAAACATGGCCGAGTCACCCTCCGAGTC 41
> Ahg948446 jgi|Araly1|948446|scaffold_800333.1
Length=487
Score = 187 bits (101), Expect = 2e-46
Identities = 153/177 (86%), Gaps = 7/177 (4%)
Strand=Plus/Plus
Query 1062 CATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCT-GGAGAAAT-G 1119
||||||| ||| ||||||||||||| ||| | ||||||||||||||| | |||| ||| |
Sbjct 267 CATGATCCTGAGTGGGTGATGAGCAGATACAAAGAAGTCATTGAGTT-TGGGAG-AATCG 324
Query 1120 AACGAGAAGCTGGGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCAATTTG 1179
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 325 AAAGAGAAGCTGAGTACACTCCT---GAAGAACGTTGGAAATGTCGGTATTGCCAATTTG 381
Query 1180 CTAAGTCTTGCCCTGGAAACCCGAGTTTCGAATCTCCTAGCACAAGCTCACCAACAA 1236
||||||||||| |||||| || ||| ||||||||||| | | ||||||||| |||
Sbjct 382 CTAAGTCTTGCTGTGGAAATCCAAGTCTCGAATCTCCTTCCCCGAGCTCACCACCAA 438
Score = 117 bits (63), Expect = 3e-25
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 628 TAGGATTTGTTGGAGGTCAATGGATTGTGGGAATTATTGACGAGCTTAGAAAGGCGTATG 687
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||
Sbjct 58 TAGGATTTGTTGGAGGTCAATGGATTGTGGGAATTATTGATGAGGTTAGAAAGGCATCTG 117
Query 688 CAGAAGAGTCTTCTGATA 705
|||| |||||||||||||
Sbjct 118 CAGATGAGTCTTCTGATA 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5