BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60380.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332294 jgi|Araly1|332294|fgenesh1_pm.C_scaffold_8001637 1626 0.0
Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 209 3e-53
> Ahg332294 jgi|Araly1|332294|fgenesh1_pm.C_scaffold_8001637
Length=1089
Score = 1626 bits (880), Expect = 0.0
Identities = 1023/1093 (94%), Gaps = 5/1093 (0%)
Strand=Plus/Plus
Query 31 ATGAATCTTTTGCCTCTTTTGTTCTCAGTAGCTCTAGTTGGTTCGGTTCAATGTACGGTG 90
|||| |||||| ||||||||||||||||||| ||||||| |||| |||||| ||||||||
Sbjct 1 ATGACTCTTTTACCTCTTTTGTTCTCAGTAGTTCTAGTTCGTTCTGTTCAAAGTACGGTG 60
Query 91 CCTCTCAGATCCTTCAAGATAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAA 150
|| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCCTTAGATCCTTCAAGGTAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAG 120
Query 151 CAACCAGGACTTGATCATTCCTTGCTCAAAAACCACACAATCCAGATGAAACCATCATTA 210
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACCAGGACTTGATCACCCCTTACTCAAAAACCACACAATCCAGATGAAACCATCATTA 180
Query 211 TCAAGACATGAGCTAAAGAATCAAACTAGCAACAACAAAACATATAAGAAGGACATAGAA 270
|||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||| ||
Sbjct 181 TCAAGACATGAGCTAAAGAATCAAACAAGCAACAACAAGACATATAAGACGAAAATAAAA 240
Query 271 TGTCCATATGGAACTATTCCTGTATTGAGAAACACAAAAGAATTCAACACCAAAGCCCAA 330
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 241 TGTCCATATGGAACTATTCCTGTACTGAGAAATACAAAAGAATTCAACACCAAAGCCCAA 300
Query 331 CTCTTGGCTGCCAAGTATTTCAATCCGTTATCAGCTGATAGCCCTGGAACACATATCGCT 390
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||
Sbjct 301 CTCTTGGCTGCCAAGTATTTCAATCCATTATCAGCTGATAGCCCTGGGACACACATTGCT 360
Query 391 GGGGTAAAGCAACACGGTGGTCCATATCATGGTATAGAAGCTAAGTTTAATGCATATAAC 450
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 361 GGGGTAAAGCAACACGGTGGTCCATATCACGGTGTAGAAGCTAAGTTTAATGCATATAAT 420
Query 451 CTAAACATTGGAGAAGATCAAGCCTCATATAGTCAAATGTATTTAGGCAGTGGACATTAT 510
||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CTAAACATTAAAGAGGATCAAGCCTCTTATAGTCAAATGTATTTAGGCAGTGGACATTAT 480
Query 511 GGCGAAGTCAATTTCATTTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 570
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGCGAAGTCAATTTCATCTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 540
Query 571 CGTCTTTGGACATATGGATTTTGGATGGGTAAAGGTGGAAAAGGATGTTATAACATGGCA 630
| |||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 541 CATCTTTGGACATACGGATTTTGGTTGGGTAAAAGTGGAAAAGGATGTTATAATATGGCA 600
Query 631 TGTCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCTTAGTCAAACCCATGTACCTTAAG 690
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 601 TGCCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCATAGTCAAACCCCTGTACCTTGAG 660
Query 691 CCAGGGGAGC-CTGCATCGTTGCAATGGGCCATCCATCAAGATGAACAAACACGAAACTG 749
|||||| | |||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 661 GGAGGGGA-CTCTGCGTCGTTGCAGTGGGCCATCCATCAAGATGAACAAACAAGAAACTG 719
Query 750 GTGGATTATACAAATGTCGCCTTATACATATATCGGTTATTGGCCAAAAGAGCTATTTTA 809
|||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |
Sbjct 720 GTGGGTTATACAAATGTCGCCTTATACATACATCGGTTATTGGCCCAAGGAGCTATTTCA 779
Query 810 CCTTATGGATAATGGTGCTACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACCTTC 869
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 CCTTATGGATAATGGTGCAACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACATTC 839
Query 870 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCTTTGAGATCAGC 929
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCATTGAGATCAGC 899
Query 930 CATGTTTTCCAATGTTGATGTCTTATATTCCAAGTATGAGAAAGGTAAAATAAATGCGTT 989
||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 900 CATGTTTTCAAATGTTGATGTCTTGTATTCTAAGTATGAGAAAGGTAAAATCAATGCTTT 959
Query 990 TCCTATAGTGGAGTTGCTAGATAGTAGTAGATGTTATGGGCTACGAATTGGTAAGAGAGT 1049
|||||||| |||| ||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 960 TCCTATAGAGGAGATGCTAGACAGTAG-A--TGTTATGGGCTACGAATTGGTAAGAGAGT 1016
Query 1050 TCGATTTTGGACTAGTCCACTCGGATACTTTTTCAATTATGGTGGTCCTGGAGGAATCTC 1109
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1017 TCGATTTTGGACTAGTCCACTCGGATTCTTTTTCAATTATGGTGGTCCGGGAGGAATCTC 1076
Query 1110 TTGTGGAGTTTGA 1122
|||||||||||||
Sbjct 1077 TTGTGGAGTTTGA 1089
> Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146
Length=849
Score = 209 bits (113), Expect = 3e-53
Identities = 171/199 (86%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 1 ATGTCTACAACAACTAGGATCACTCTTGTTATGAATCTTTTGCCTCTTTTGTTC-TCAGT 59
||||||||||||| || ||| ||||| ||| ||||||| |||| ||| |||||| | ||
Sbjct 1 ATGTCTACAACAATTAAGATAACTCTGGTTTTGAATCTCTTGCATCTATTGTTCGT-AGC 59
Query 60 AGCTCTAGTTGGTTCGGTTCAATGTACGGTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119
||| |||||| |||| | |||| |||| |||||||||||||||||||||||||||||||
Sbjct 60 AGCCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119
Query 120 TG-TGACATACGATTGCATAGATATTTATAAACAACCAGGACTTGATCATTCCTTGCTCA 178
|| | | ||||||||| ||||||||| ||| |||||||||||| ||||| ||||||||
Sbjct 120 TGCTAA-ATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCC 178
Query 179 AAAACCACACAATCCAGAT 197
|||||||||||||||||||
Sbjct 179 AAAACCACACAATCCAGAT 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5