BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60380.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg332294 jgi|Araly1|332294|fgenesh1_pm.C_scaffold_8001637 1626 0.0 Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 209 3e-53 > Ahg332294 jgi|Araly1|332294|fgenesh1_pm.C_scaffold_8001637 Length=1089 Score = 1626 bits (880), Expect = 0.0 Identities = 1023/1093 (94%), Gaps = 5/1093 (0%) Strand=Plus/Plus Query 31 ATGAATCTTTTGCCTCTTTTGTTCTCAGTAGCTCTAGTTGGTTCGGTTCAATGTACGGTG 90 |||| |||||| ||||||||||||||||||| ||||||| |||| |||||| |||||||| Sbjct 1 ATGACTCTTTTACCTCTTTTGTTCTCAGTAGTTCTAGTTCGTTCTGTTCAAAGTACGGTG 60 Query 91 CCTCTCAGATCCTTCAAGATAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAA 150 || || |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCCCTTAGATCCTTCAAGGTAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAG 120 Query 151 CAACCAGGACTTGATCATTCCTTGCTCAAAAACCACACAATCCAGATGAAACCATCATTA 210 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 121 CAACCAGGACTTGATCACCCCTTACTCAAAAACCACACAATCCAGATGAAACCATCATTA 180 Query 211 TCAAGACATGAGCTAAAGAATCAAACTAGCAACAACAAAACATATAAGAAGGACATAGAA 270 |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||| || Sbjct 181 TCAAGACATGAGCTAAAGAATCAAACAAGCAACAACAAGACATATAAGACGAAAATAAAA 240 Query 271 TGTCCATATGGAACTATTCCTGTATTGAGAAACACAAAAGAATTCAACACCAAAGCCCAA 330 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 241 TGTCCATATGGAACTATTCCTGTACTGAGAAATACAAAAGAATTCAACACCAAAGCCCAA 300 Query 331 CTCTTGGCTGCCAAGTATTTCAATCCGTTATCAGCTGATAGCCCTGGAACACATATCGCT 390 |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||| Sbjct 301 CTCTTGGCTGCCAAGTATTTCAATCCATTATCAGCTGATAGCCCTGGGACACACATTGCT 360 Query 391 GGGGTAAAGCAACACGGTGGTCCATATCATGGTATAGAAGCTAAGTTTAATGCATATAAC 450 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 361 GGGGTAAAGCAACACGGTGGTCCATATCACGGTGTAGAAGCTAAGTTTAATGCATATAAT 420 Query 451 CTAAACATTGGAGAAGATCAAGCCTCATATAGTCAAATGTATTTAGGCAGTGGACATTAT 510 ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 CTAAACATTAAAGAGGATCAAGCCTCTTATAGTCAAATGTATTTAGGCAGTGGACATTAT 480 Query 511 GGCGAAGTCAATTTCATTTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 570 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGCGAAGTCAATTTCATCTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 540 Query 571 CGTCTTTGGACATATGGATTTTGGATGGGTAAAGGTGGAAAAGGATGTTATAACATGGCA 630 | |||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||| Sbjct 541 CATCTTTGGACATACGGATTTTGGTTGGGTAAAAGTGGAAAAGGATGTTATAATATGGCA 600 Query 631 TGTCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCTTAGTCAAACCCATGTACCTTAAG 690 || ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 601 TGCCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCATAGTCAAACCCCTGTACCTTGAG 660 Query 691 CCAGGGGAGC-CTGCATCGTTGCAATGGGCCATCCATCAAGATGAACAAACACGAAACTG 749 |||||| | |||| |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 661 GGAGGGGA-CTCTGCGTCGTTGCAGTGGGCCATCCATCAAGATGAACAAACAAGAAACTG 719 Query 750 GTGGATTATACAAATGTCGCCTTATACATATATCGGTTATTGGCCAAAAGAGCTATTTTA 809 |||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| | Sbjct 720 GTGGGTTATACAAATGTCGCCTTATACATACATCGGTTATTGGCCCAAGGAGCTATTTCA 779 Query 810 CCTTATGGATAATGGTGCTACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACCTTC 869 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 780 CCTTATGGATAATGGTGCAACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACATTC 839 Query 870 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCTTTGAGATCAGC 929 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 840 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCATTGAGATCAGC 899 Query 930 CATGTTTTCCAATGTTGATGTCTTATATTCCAAGTATGAGAAAGGTAAAATAAATGCGTT 989 ||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| || Sbjct 900 CATGTTTTCAAATGTTGATGTCTTGTATTCTAAGTATGAGAAAGGTAAAATCAATGCTTT 959 Query 990 TCCTATAGTGGAGTTGCTAGATAGTAGTAGATGTTATGGGCTACGAATTGGTAAGAGAGT 1049 |||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct 960 TCCTATAGAGGAGATGCTAGACAGTAG-A--TGTTATGGGCTACGAATTGGTAAGAGAGT 1016 Query 1050 TCGATTTTGGACTAGTCCACTCGGATACTTTTTCAATTATGGTGGTCCTGGAGGAATCTC 1109 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1017 TCGATTTTGGACTAGTCCACTCGGATTCTTTTTCAATTATGGTGGTCCGGGAGGAATCTC 1076 Query 1110 TTGTGGAGTTTGA 1122 ||||||||||||| Sbjct 1077 TTGTGGAGTTTGA 1089 > Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 Length=849 Score = 209 bits (113), Expect = 3e-53 Identities = 171/199 (86%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 1 ATGTCTACAACAACTAGGATCACTCTTGTTATGAATCTTTTGCCTCTTTTGTTC-TCAGT 59 ||||||||||||| || ||| ||||| ||| ||||||| |||| ||| |||||| | || Sbjct 1 ATGTCTACAACAATTAAGATAACTCTGGTTTTGAATCTCTTGCATCTATTGTTCGT-AGC 59 Query 60 AGCTCTAGTTGGTTCGGTTCAATGTACGGTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119 ||| |||||| |||| | |||| |||| ||||||||||||||||||||||||||||||| Sbjct 60 AGCCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119 Query 120 TG-TGACATACGATTGCATAGATATTTATAAACAACCAGGACTTGATCATTCCTTGCTCA 178 || | | ||||||||| ||||||||| ||| |||||||||||| ||||| |||||||| Sbjct 120 TGCTAA-ATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCC 178 Query 179 AAAACCACACAATCCAGAT 197 ||||||||||||||||||| Sbjct 179 AAAACCACACAATCCAGAT 197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5