BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60400.3 Length=699 Score E Sequences producing significant alignments: (Bits) Value Ahg496184 jgi|Araly1|496184|fgenesh2_kg.8__2000__AT5G60400.3 612 1e-174 > Ahg496184 jgi|Araly1|496184|fgenesh2_kg.8__2000__AT5G60400.3 Length=645 Score = 612 bits (331), Expect = 1e-174 Identities = 440/489 (90%), Gaps = 22/489 (4%) Strand=Plus/Plus Query 5 TCAAATGCACAACACACCACAGGACaaaaaaaTCTTTCTCTC--ATATTAATTACATGGT 62 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCAAATGCACAACACACCACAGGACAAAAAAATCTTTCTCTCATATATTAATTACATGGT 60 Query 63 ACCATTATATATCTATACTCTCTTTAACCCATTACCAATTCAAGATCTTGTCtttttttt 122 || | |||| ||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 61 ACTAGTATACATCTAGACCCTCTTTAACCCATTACCAATTCAAGATCTTGTC----TTTT 116 Query 123 tCTTCTTAAAAACAAGATCCAAATTTCTGAAAAATCCA-T-TCACTACA-AAGAAAGAAA 179 | ||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||| Sbjct 117 T-TTCTTAACAACAAGATCCAAAATTCTGAAAAATCCACTCACACTACACAAGAAAGAAA 175 Query 180 TGCTGTCTACAACTCTTAGT-GGTAACTATGGCTTCCCTCTGTGCATCTCTGGGATCACT 238 ||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct 176 TGCTGTCAACAACTCTTAGTGGGT-ATTATGGCTTCCCTCTGTGCATCTCTGGGATCACT 234 Query 239 CAGCAATTAAGTCTGTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG 298 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 CAGCAATTAAGTCTCTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG 294 Query 299 AGGAGAAGGAGATCAGAAGGTAAACATGAGTACAAGAGCCATGGTGAAGAAGATGTGGAG 358 ||| ||||||| |||||||||||||||||| || ||||||||||||||| |||| ||| Sbjct 295 CGGAAAAGGAGACCAGAAGGTAAACATGAGTGCATGAGCCATGGTGAAGATGATGCGGAA 354 Query 359 AGGCTTCAAGAGA--AT-GA--A----GATGTTAGAGATCTAGTTGCTTTACTACAAGAT 409 ||||||||||||| | || | ||||||||||||||||||| |||| |||||||| Sbjct 355 AGGCTTCAAGAGATGAGAGAGGATAAAGATGTTAGAGATCTAGTTGATTTATTACAAGAT 414 Query 410 CTAGGCTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGTTTTTACTTTTAT 469 ||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 415 CTAGGTTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGGTTTC-CTCCTAT 473 Query 470 TACAAGATG 478 ||||||||| Sbjct 474 TACAAGATG 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25694846058 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5