BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G60400.3

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496184 jgi|Araly1|496184|fgenesh2_kg.8__2000__AT5G60400.3         612    1e-174


> Ahg496184 jgi|Araly1|496184|fgenesh2_kg.8__2000__AT5G60400.3
Length=645

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 440/489 (90%), Gaps = 22/489 (4%)
 Strand=Plus/Plus

Query  5    TCAAATGCACAACACACCACAGGACaaaaaaaTCTTTCTCTC--ATATTAATTACATGGT  62
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  1    TCAAATGCACAACACACCACAGGACAAAAAAATCTTTCTCTCATATATTAATTACATGGT  60

Query  63   ACCATTATATATCTATACTCTCTTTAACCCATTACCAATTCAAGATCTTGTCtttttttt  122
            || | |||| ||||| || |||||||||||||||||||||||||||||||||    ||||
Sbjct  61   ACTAGTATACATCTAGACCCTCTTTAACCCATTACCAATTCAAGATCTTGTC----TTTT  116

Query  123  tCTTCTTAAAAACAAGATCCAAATTTCTGAAAAATCCA-T-TCACTACA-AAGAAAGAAA  179
            | ||||||| ||||||||||||| |||||||||||||| |  ||||||| ||||||||||
Sbjct  117  T-TTCTTAACAACAAGATCCAAAATTCTGAAAAATCCACTCACACTACACAAGAAAGAAA  175

Query  180  TGCTGTCTACAACTCTTAGT-GGTAACTATGGCTTCCCTCTGTGCATCTCTGGGATCACT  238
            ||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct  176  TGCTGTCAACAACTCTTAGTGGGT-ATTATGGCTTCCCTCTGTGCATCTCTGGGATCACT  234

Query  239  CAGCAATTAAGTCTGTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG  298
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  CAGCAATTAAGTCTCTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG  294

Query  299  AGGAGAAGGAGATCAGAAGGTAAACATGAGTACAAGAGCCATGGTGAAGAAGATGTGGAG  358
             ||| ||||||| |||||||||||||||||| || ||||||||||||||| |||| ||| 
Sbjct  295  CGGAAAAGGAGACCAGAAGGTAAACATGAGTGCATGAGCCATGGTGAAGATGATGCGGAA  354

Query  359  AGGCTTCAAGAGA--AT-GA--A----GATGTTAGAGATCTAGTTGCTTTACTACAAGAT  409
            |||||||||||||  |  ||  |    ||||||||||||||||||| |||| ||||||||
Sbjct  355  AGGCTTCAAGAGATGAGAGAGGATAAAGATGTTAGAGATCTAGTTGATTTATTACAAGAT  414

Query  410  CTAGGCTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGTTTTTACTTTTAT  469
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||  |||
Sbjct  415  CTAGGTTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGGTTTC-CTCCTAT  473

Query  470  TACAAGATG  478
            |||||||||
Sbjct  474  TACAAGATG  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25694846058


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5