BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60410.2
Length=3219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496189 jgi|Araly1|496189|fgenesh2_kg.8__2005__AT5G60410.5 4630 0.0
Ahg897324 jgi|Araly1|897324|Al_scaffold_0005_1290 2222 0.0
> Ahg496189 jgi|Araly1|496189|fgenesh2_kg.8__2005__AT5G60410.5
Length=3085
Score = 4630 bits (2507), Expect = 0.0
Identities = 2715/2817 (96%), Gaps = 8/2817 (0%)
Strand=Plus/Plus
Query 127 ATCAAGTATCCGATTTCATGATCGGTTGCTG--TATGGAGACTAATTGCTGGAGTTTAGG 184
||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 53 ATC-AGTTTCCGATTTCATGATCGGGTGCTGTATATGGAGACTAATTGCTGGAGTTTAGG 111
Query 185 TTCGTGTGTTTTGAACTGAGCTTTTGGTTCTTGTTTGTGTCTGGTGTTGAAGACATGGAT 244
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 112 TTCGTGTGTTTTGAACTGAGCTTTTGGTTCTTG-TT-TGTCTGCTGTTGAAGACATGGAT 169
Query 245 TTGGAAGCTAATTGTAAGGAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAGGATGTG 304
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 170 TTGGAAGCTACTTGTAAGGATAAACTTTCATATTTTCGAATAAAAGAGCTCAAGGATGTG 229
Query 305 CTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGGAACTTGTCGACCGGATCTTG 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGGAACTTGTCGACCGGATCTTA 289
Query 365 ACCCTTCTTTCTGATGAACAAGCTGCCAGGTTGTTGTCTAAAAAGAATACAGTGGCAAAG 424
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 290 ACCCTTCTTTCTGATGAACAAGCTGCCAGGGTGTGGTCTAAAAAGAATACAGTGGCAAAG 349
Query 425 GAAGCAGTTGCCAAATTAGTGGACGATACATATAGGAAAATGCAAGTATCTGGGGCAAGT 484
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GAAGAAGTTGCAAAATTAGTGGACGATACATATAGGAAAATGCAAGTATCTGGGGCAAGT 409
Query 485 GATTTAGCATCAAAAGGACAAGTGAGTTCAGATACCAGTAATCTGAAAGTTAAGGGAGAG 544
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 GATTTAGCATCAAAAGGACAAGTAAGTTCAGATACCAGTAATCTGAAAGTTAAGGGAGAG 469
Query 545 CCTGAAGACCCCTTCCAACCAGAAATTAAAGTTCGATGTGTTTGTGGAAACTCGCTAGAA 604
|||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 470 CCTGAAGATCCCTTTCAACCAGAAATTAAAGTTCGATGTGTTTGTGGGAATTCACTAGAA 529
Query 605 ACAGACTCAATGATACAGTGTGAGGATCCAAGATGCCATGTTTGGCAGCATGTTGGCTGT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ACAGACTCAATGATACAGTGTGAGGATCCAAGATGCCATGTTTGGCAGCATGTTGGCTGT 589
Query 665 GTTATTCTCCCAGATAAGCCTATGGATGGGAATCCACCACTTCCGGAATCATTTTATTGT 724
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 590 GTTATTCTCCCAGATAAGCCAATGGATGGGAATCCACCACTTCCAGAATCATTTTATTGT 649
Query 725 GAAATCTGCCGACTTACTCGAGCTGACCCATTTTGGGTTACAGTGGCACATCCACTCTCT 784
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 650 GAAATCTGCCGACTTACTCGAGCTGACCCGTTTTGGGTTACAGTGGCACATCCACTCTCT 709
Query 785 CCAGTGAGGCTGACTGCAACGACTATCCCAAATGATGGTGCAAGCACAATGCAGAGTGTG 844
||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 710 CCAGTGAGGCTGACTGCGACGACTATCCCAAATGATGGTACAAACACAATGCTGAGTGTG 769
Query 845 GAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTTTTGGCCAAACCAGAGTACGAT 904
||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 770 GAGAGAACATTTCAAATTACAAGGGCAGACAAGGACCTGCTGGCCAAACAAGAGTACGAT 829
Query 905 GTTCAGGCTTGGTGTATGCTCTTGAATGATAAAGTTCTCTTTAGGATGCAGTGGCCTCAG 964
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 830 GTTCAGGCTTGGTGTATGCTCTTGAATGACAAAGTTCTCTTTAGGATGCAGTGGCCTCAG 889
Query 965 TATGCTGATCTGCAGGTCAATGGTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAG 1024
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 890 TATGCTGATCTGCAGGTCAATGGTTTGCCTGTACGTGCAATTAATCGACCTGGATCACAG 949
Query 1025 CTTTTGGGAGTCAACGGCCGCGACGATGGACCCATTATTACATCTTGTATTAGGGATGGA 1084
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 950 CTTTTGGGAGTCAACGGCCGCGACGATGGACCTATTATCACACCTTGTATTAGGGATGGA 1009
Query 1085 GTTAACAGAATATCCTTGAGTGGAGGTGACGTTCGGATTTTTTGTTTTGGGGTCAGACTT 1144
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1010 GTTAACAGAATATCCTTGAGTGGAGGTGACGTTCGGATTTTTTGTTTTGGAGTTAGACTT 1069
Query 1145 GTGAAGCGCAGGACTCTACAACAGGTTCTAAATTTGATTCCAGAAGAGGGTAAAGGGGAG 1204
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1070 GTGAAGCGCAGGACTCTACAACAGGTTCTAAATTTGATTCCAGAAGAAGGTAAAGGGGAG 1129
Query 1205 ACTTTTGAAGATGCTCTTGCACGTGTCCGCCGATGCATTGGAGGTGGAGGTGGAGATGAT 1264
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 ACTTTTGAAGATGCTCTTGCACGAGTCCGCCGATGCATTGGAGGTGGAGGTGGAGATGAT 1189
Query 1265 AATGCCGACAGTGATAGTGACATTGAAGTTGTTGCTGATTTCTTCGGTGTCAATCTTCGG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AATGCCGACAGTGATAGTGACATTGAAGTTGTTGCTGATTTCTTCGGTGTCAATCTTCGG 1249
Query 1325 TGTCCTATGAGCGGTTCTAGGATAAAAGTTGCTGGGAGATTTTTACCCTGTGTGCACATG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TGTCCTATGAGCGGTTCTAGGATAAAAGTTGCTGGGAGATTTTTACCCTGTGTGCACATG 1309
Query 1385 GGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCAACGTTCCAGAAAGTGGCAGTGC 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCAACGTTCCAGAAAGTGGCAGTGC 1369
Query 1445 CCTATTTGTCTGAAGAACTACTCAGTGGAGCATGTAATCGTCGATCCTTATTTTAACCGT 1504
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1370 CCTATTTGTCTGAAGAACTACTCAGTGGAGCATGTAATTGTCGATCCTTATTTTAACCGT 1429
Query 1505 ATCACGTCTAAGATGAAGCATTGTGATGAAGAGGTGACTGAAATTGAAGTGAAACCTGAT 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATCACGTCTAAGATGAAGCATTGTGATGAAGAGGTGACTGAAATTGAAGTGAAACCTGAT 1489
Query 1565 GGTTCTTGGCGTGTAAAGTTCAAAAGAGAGAGTGAGCGAAGGGAACTGGGGGAACTCTCA 1624
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGTTCTTGGCGTGTAAAGTCCAAAAGAGAGAGTGAGCGAAGGGAACTGGGGGAACTCTCA 1549
Query 1625 CAGTGGCATGCACCTGATGGTAGCCTTTGCCCCTCTGCTGTTGATATTAAACGGAAGATG 1684
|||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1550 CAGTGGCACGCACCAGATGGTAGTCTTTACCCCTCTGCTGTTGATATTAAACGGAAGATG 1609
Query 1685 GAAATGTTACCGGTTAAGCAAGAAGGTTACTCAGATGGTCCAGCCCCGCTAAAACTTGGA 1744
|||||||||||||||||||||||||||| ||||||||| || || || ||||||||||||
Sbjct 1610 GAAATGTTACCGGTTAAGCAAGAAGGTTTCTCAGATGGCCCGGCGCCTCTAAAACTTGGA 1669
Query 1745 ATAAGGAAGAATCGTAATGGCATTTGGGAAGTTAGCAAACCTAATACAAATGGATTATCT 1804
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 ATAAGGAAAAATCGTAATGGCATTTGGGAAGTTAGCAAACCTAATACAAATGGATTATCT 1729
Query 1805 TCCAGTAATAGGCAAGAAAAGGTTGGGTATCAGGAGAAGAATATTATACCAATGAGTAGT 1864
|||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1730 TCCAATAATAGGCAAGAAAAGGTTGGGTATCAGGAGAAAAATGTTATACCAATGAGTAGT 1789
Query 1865 AGTGCTACTGGAAGTGGTAGGGATGGTGATGATGCAAGCGTAAACCAGGATGCTATTGGA 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 AGTGCTACTGGAAGTGGTAGGGATGGTGATGATGCAAGCGTAAACCAGGATGCTATTGGA 1849
Query 1925 ACTTTTGACTTTGTAGCCAACGGCATGGAACTTGATTCCATTTCCATGAATGTTGATTCA 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 ACTTTTGACTTTGTAGCCAACGGCATGGAACTTGATTCCATTTCCATGAATGTTGATTCA 1909
Query 1985 GGTTATAACTTTCCTGACAGAAACCAATCTGGCGAGGGTGGAAATAATGAAGTCATCGTT 2044
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1910 GGTTATAACTTTCCTGACAGAAACCAATCTGGAGAGGGTGGAAATAATGATGTCATCGTT 1969
Query 2045 CTGAGTGATTCTGATGACGAGAATGATTTAGTGATCACTCCAGGGCCTGCATACAGTGGT 2104
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1970 CTGAGTGATTCTGATGACGAGAATGATGTAGTAATCACTCCAGGGCCTGCATACAGTGGT 2029
Query 2105 TGTCAAACAGATGGTGGACTTACTTTTCCACTGAACCCTCCTGGAATAATTAACTCATAT 2164
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2030 TGTCAAACAGATGGTGGGCTTACTTTTCCACTGAACCCTTCTGGAATAATTAACTCATAT 2089
Query 2165 AATGAGGACCCACACAGCATAGCTGGGGGAAGTTCAGGCTTAGGTCTTTTCAATGATGAT 2224
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2090 AATGAGGACCCACACAACATAGCTGGGGGAAGTTCACGCTTAGGTCTTTTCAATGATGAT 2149
Query 2225 GATGAATTTGATACGCCCCTTTGGTCATTTCCTTCTGAAACTCCAGAAGCCCCTGGGTTC 2284
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GACGAATTTGATACGCCCCTTTGGTCATTTCCTTCTGAAACTCCAGAAGCCCCTGGGTTC 2209
Query 2285 CAACTATTTAGATCTGATGCTGACGTTTCAGGAGGTTTAGTTGGTTTGCATCATCATAGT 2344
|| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 2210 CAGCTATTTAGATCTGATGCTGACGTTTCAGAAGGTTTAGTTGGTTTGCATAATCATGGT 2269
Query 2345 CCACTAAACTGTTCTCCTGAAATAAATGGAGGTTATACCATGGCTCCTGAGACATCAATG 2404
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2270 CCACTAAACTGTGCTCCTGAAATAAATGGAGGTTACACCATGGCTCCTGAGACATCAATG 2329
Query 2405 GCATCTGTTCCTGTGGTTCCTGGCTCTACTGGCCGATCTGAAGCAAACGATGGCCTAGTT 2464
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2330 GCATCTATTCCTGTGGTTCCTGGCTCGGCTGGACGATCTGAAGCAAACGATGGCCTAGTT 2389
Query 2465 GACAATCCTCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTTTTGCCAACAAAA 2524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 GACAATCCTCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTTTTGCCAACAAAA 2449
Query 2525 CCAGATGCTTCAGCTCAGTCGGGTTTTAAAAACCAAGCTGATATGTCAAATGGTCTCCGT 2584
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2450 CCAGATGCTTCAGCTCAGTCGGGTTTTAAAAACCAAGCTGATATGTCAAATGGTATCCGC 2509
Query 2585 AGTGAAGACTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCT 2644
||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||
Sbjct 2510 AGTGAAGACTGGATCTCGCTTAGGCTAGGTGATAGCGCTTCTGGGAATCATCGAGTTCCT 2569
Query 2645 GCAACTACAAACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGAT 2704
|||||| |||||||| ||||||||||||| ||||||||| | |||||||||||| |||||
Sbjct 2570 GCAACTGCAAACGGGGTTAACTCAAGCCAGCAGATGTCTCCAAGGGAAGGTTCTTTGGAT 2629
Query 2705 ACTACAACAGAGACTGCGTCGTTGCTTCTGGGTATGAATGACAGTAGACAAGACAAGGCA 2764
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2630 ACTACAACAGACACTGCGTCGTTGCTTCTGGGTATGAATGACAGTAGGCAAGACAAGGCA 2689
Query 2765 AAGAAGCAAAGATCAGATAATCCATTTTCATTTCCTCGCCAGAAGCGTTCTGTAAGACCT 2824
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2690 AAGAAGCAAAGATCAGATAATCCATTTTCATTTCCTCGGCAGAAGCGTTCTGTAAGACCT 2749
Query 2825 CGGATGTACCTCTCCATTGACTCGGATTCTGAAACAATGAACAGGATCATCAGACAAGAC 2884
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2750 CGGATGTTCCTCTCCATTGACTCGGATTCTGAAACAATGAACGGGATCATCAGACAAGAC 2809
Query 2885 ACCGGAGTTTAAACAAGATTTGCATAATTCTCT--GTGCAGGCAAGAATTGAACCGG 2939
||||||| ||| |||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 2810 ACCGGAGGTTAC-CAAGATTTGCTTGATTCTCTCTGTGCAGGCAAGAATTGAACCGG 2865
Score = 252 bits (136), Expect = 1e-65
Identities = 187/209 (89%), Gaps = 13/209 (6%)
Strand=Plus/Plus
Query 3022 GGATGTAATTT-GC-AAAGCGAA-GCACTGGCTGATTTAGTTTCTCTGATAGAAAAGAAA 3078
||||||| ||| || ||||| || |||||||||||||||||| ||||||||| | ||||
Sbjct 2864 GGATGTAGTTTGGCAAAAGC-AATGCACTGGCTGATTTAGTTACTCTGATAGGCAGGAAA 2922
Query 3079 AGTGGGCACAGT-GGTTCC-G---ATTTAATTAGTAGTTTGTATACTCGAAATAGGtttt 3133
|||||||||||| |||||| | | |||||||||| |||||||||||| ||||||||||
Sbjct 2923 AGTGGGCACAGTGGGTTCCGGTTTAATTAATTAGTAATTTGTATACTCG-AATAGGTTTT 2981
Query 3134 ttttGTGTGGACGATGATAAAATTACTTCGAAGCCAGGAG---CTATAGAGAGATATAGC 3190
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2982 TTTTTTGTGGACGATGATAAAATTACTTCGAAGCCAGGAGGAGCTATAGAGAGATATAGC 3041
Query 3191 AATGTAAATTATGGGCTCCAAATTTTATT 3219
||||||||||||||||||||| |||||||
Sbjct 3042 AATGTAAATTATGGGCTCCAATTTTTATT 3070
> Ahg897324 jgi|Araly1|897324|Al_scaffold_0005_1290
Length=2622
Score = 2222 bits (1203), Expect = 0.0
Identities = 2206/2678 (82%), Gaps = 118/2678 (4%)
Strand=Plus/Plus
Query 239 ATGGATTTGGAAGCTAATTGTAAGGAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAG 298
|||||||||| ||| ||| ||||| |||||| | |||||||| || |||||||| |||
Sbjct 1 ATGGATTTGGTCTCTAGTTGCAAGGAGAAACTTGCGTATTTTCGAATTAAAGAGCTTAAG 60
Query 299 GATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGGAACTTGTCGACCGG 358
|||||||| | ||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 61 GATGTGCTTAATCAGCTGGGACTTTCTAAACAGGGAAAGAAGCAGGACCTTGTCGAGCGG 120
Query 359 ATCTTGACCCTTCTTTCTGATGAACAAGCTGCCAGGTTGTTGTCTAAAAAGAATACAGTG 418
||||||| | ||||||||||||| || || || ||||||| |||||||||| || | |||
Sbjct 121 ATCTTGAGCATTCTTTCTGATGAGCATGCGGCTAGGTTGTGGTCTAAAAAGGATGCCGTG 180
Query 419 GCAAAGGAAGCA-GTTGCCAAATTAGTGGACGATACATATAGGAAAATGCAAGTATCTGG 477
|||| |||| | ||||| ||| ||||||| ||| |||||||||||||||||| || |||
Sbjct 181 GCAAGGGAA-AAGGTTGCAAAACTAGTGGAGGATGCATATAGGAAAATGCAAGCATGTGG 239
Query 478 GGCAAGTGATTTAGCATCAAAAGGACAAGTGAGTTCAGATACCAGTAATCTGAAAGTTAA 537
||||||||| |||| |||||||||||||| |||||||||| ||||| | | ||||||||
Sbjct 240 GGCAAGTGACGTAGCGTCAAAAGGACAAGTTAGTTCAGATATCAGTACTGTTAAAGTTAA 299
Query 538 GGGAGAGCCTGAAGACCCCTTCCAACCAGAAATTAAAGTTCGATGTGTTTGTGGAAACTC 597
|||||| | |||||| | ||| |||||||||| ||||||||| ||| ||||||||| |||
Sbjct 300 GGGAGAACTTGAAGATCACTTTCAACCAGAAACTAAAGTTCGGTGTCTTTGTGGAAGCTC 359
Query 598 GCTAGAAACAGACTCAATGATACAGTGTGAGGATCCAAGATGCCATGTTTGGCAGCATGT 657
||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||
Sbjct 360 ACTAGAGACAGAGTCAATGATACAGTGCGAGGATCCGAGATGCCATGTCTGGGAGCATGT 419
Query 658 TGGCTGTGTTATTCTCCCAGATAAGCCTATGGATGGGAATCCACCACTTCCGGAATCATT 717
||| ||||| ||| |||| || ||||||||||| | ||||||| ||||| ||||||||
Sbjct 420 TGGTTGTGTCATTTTCCCGGAGAAGCCTATGGAAGTTCATCCACCTCTTCCTGAATCATT 479
Query 718 TTATTGTGAAATCTGCCGACTTACTCGAGCTGACCCATTTTGGGTTACAGTGGCACATCC 777
||| |||||||||||||||||||| || ||||||||||||||||| ||| |||| |||||
Sbjct 480 TTACTGTGAAATCTGCCGACTTACCCGTGCTGACCCATTTTGGGTCACAATGGCGCATCC 539
Query 778 ACTCTCTCCAGTGAGGCTGACTGCAACGACTATCCCAAATGATGGTGCAAGCACAATGCA 837
| | | ||| |||| | ||||||||||||| ||||||| ||||||| ||| | |||||||
Sbjct 540 ATTGTATCCGGTGAAGATGACTGCAACGACGATCCCAACTGATGGTTCAAACTCAATGCA 599
Query 838 GAGTGTGGAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTT-TTGGCCAAACCA- 895
||||||||| |||||||||||||| |||||||||||||| || ||| |||| ||| ||
Sbjct 600 GAGTGTGGACAGAACATTTCAAATAACAAGGGCAGACAAAGA-CTTATTGGTGAAA-CAT 657
Query 896 GAGTACGATGTTCAGGCTTGGTGTATGCTCTTGAATGATAAAGTTCTCTTTAGGATGCAG 955
||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 658 GAGTACGATATTCAGGCTTGGTGTATGCTCTTGAATGACAAAGTTCTATTTAGGATGCAG 717
Query 956 TGGCCTCAGTATGCTGATCTGCAGGTCAATGGTGTGCCTGTACGTGCAATTAATCGACCT 1015
|||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 718 TGGCCTCAATATGCAGATCTGCAAGTCAATGGTGTGCCTGTTCGTGCTATTAACCGACCC 777
Query 1016 GGAGG-ACAGCTTTTGGGAGTCAACGGCCGCGACGATGGACCCATTATTACATCTTGTAT 1074
|| | ||||||| |||| | ||| |||||||| |||||||| ||||||||| ||||| |
Sbjct 778 GG-GTCACAGCTTCTGGGGGCCAATGGCCGCGATGATGGACCTATTATTACACCTTGTGT 836
Query 1075 TAGGGATGGAGTTAACA-GAATATCCTTGAGTGGAGGTGACGTTCGG-ATTTTTTGTTTT 1132
||| |||||| |||||| || |||||||||||||| ||||| | | | | |||||||||
Sbjct 837 TAGAGATGGAATTAACAAGA-TATCCTTGAGTGGATGTGAC-TCCCGCAGTTTTTGTTT- 893
Query 1133 GGG-GTCAGACTTGTGAAGCG-CAGGACTCTACAACAGGTTCT-AAATTTGATTCCAGAA 1189
||| || |||||||||||||| | ||||||| |||||||| || ||| ||||||| ||
Sbjct 894 GGGTGTAAGACTTGTGAAGCGAC-GGACTCTCCAACAGGT-CTTAAACATGATTCCGGAT 951
Query 1190 GAGGGTAAAGGGGAGAC-TTTTGAAGATGCTCTTGCACGTGTCCGCCGATGCATTGGAGG 1248
|| | |||||| || || |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 952 GAAGATAAAGGTGA-ACCTTTTGAAGATGCTCTTGCGCGTGTACGCCGATGCATTGGAGG 1010
Query 1249 TGGAGGTGGAGATGATAATGCCGACAGTGATAGTGACATTGAAGTTGTTGCTGATTTCTT 1308
|| | |||| ||||| ||||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 1011 TGCAACTGGAAATGATGATGCCGACAGTGACAGTGATATTGAGGTTGTCGCAGATTTCTT 1070
Query 1309 CGGTGTCAATCTTCGGTGTCCTATGAGCGGTTCTAGGATAAAAGTTGCTGGGAGATTTTT 1368
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1071 TGGTGTCAATCTCCGGTGTCCTATGAGCGGCTCTAGGATGAAAGTTGCTGGGAGATTTAA 1130
Query 1369 ACCCTGTGTGCACATGGGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCAACGTTC 1428
|| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1131 ACTCTGTGTGCACATGGGATGTTTTGACCTTGAGGTGTTTGTGGAGCTGAATCAACGTTC 1190
Query 1429 CAGAAAGTGGCAGTGCCCTATTTGTCTGAAGAACTACTCAGTGGAGCATGTAATCGTCGA 1488
|||||||||||| || ||||||||||||||||||||||| |||||||| ||||| | ||
Sbjct 1191 CAGAAAGTGGCAATGTCCTATTTGTCTGAAGAACTACTCTCTGGAGCATATAATCATAGA 1250
Query 1489 TCCTTATTTTAACCGTATCACGTCTAAGATGA-AGCATTGTGATGAAGAGGTGACTGAAA 1547
||||||||||||||| ||||| || ||||||| | ||||||||||||||| ||||||| |
Sbjct 1251 TCCTTATTTTAACCGGATCACATCAAAGATGAGA-CATTGTGATGAAGAGTTGACTGAGA 1309
Query 1548 TTGAAGTGAAACCTGATGGTTCTTGGCGTGTAAAGTTCAAAAGAGAGAGTGAGCGAAGGG 1607
||||| |||| |||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 1310 TTGAAATGAAGCCTGATGGTTCTTGGCGTGTGAAGTTCAAAAGTGAAAGTGAGCGCAGGG 1369
Query 1608 AACTGGGGGAACTCTCACAGTGGCA-TGCACCTGATGGTAGCCT-TTGCCCCTCTGCTGT 1665
|| |||||||||||||||| ||||| | |||||||||||| || || | || | | ||
Sbjct 1370 AATTGGGGGAACTCTCACAATGGCACTT-ACCTGATGGTAGTCTCTT-CTCCACAGTTGA 1427
Query 1666 TGATATTAAACGGAAGATGGAAATGTTA-C-C-GGTTAAGCAAGAAGGTTACTCAGATGG 1722
||| ||||||| |||||||||||| || | | |||||| |||||||||| |||||||||
Sbjct 1428 TGAGATTAAACCCAAGATGGAAATGCTAACACCGGTTAAACAAGAAGGTTGCTCAGATGG 1487
Query 1723 TCCAGCCCCGCTAAAACTTGGAATAAGGAAGAATCGTAATGGCATTTGGGAAGTTAGCAA 1782
|||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1488 TCCAACCCCTTTAAAACTTGGAATAAGGAAGAATCGCAATGGTATTTGGGAAGTTAGCAA 1547
Query 1783 ACCTAATACAAATGGATTATCTTCCAGTAATAGGCAAGAAAAGGTTGGGTATCAGGAGAA 1842
|||||||| ||||| || |||||||||||||||||||| ||| ||| |||||||||| |
Sbjct 1548 ACCTAATATTAATGGTTTGTCTTCCAGTAATAGGCAAGAGAAGCTTGAGTATCAGGAGCA 1607
Query 1843 GAATATTATACCAATGAGTAGTAGTGCTACTGGAAGTGGTAGGGATGGTGATGATGCAAG 1902
||| ||||||||||||| |||||||| |||||||||||||||||||||||||| | ||
Sbjct 1608 TAATGTTATACCAATGAGCAGTAGTGCCACTGGAAGTGGTAGGGATGGTGATGACCCTAG 1667
Query 1903 CGTAAACCAGGATGCTATTGGAACTTTTGACTTTGTAGCCAACGGCATGGAACTTGATTC 1962
|||||||||||| ||| ||||||| ||||| |||| | ||| || ||||| ||||||||
Sbjct 1668 CGTAAACCAGGACGCTGTTGGAACCTTTGATTTTGGAAACAATGGGATGGAGCTTGATTC 1727
Query 1963 -CATTTCCATGAATGTTGATTCAGGTTATAACTTTCCTGACAGAAA-C--CAATCTG--G 2016
| | ||||||||||| ||| || | || |||||| ||| || || | ||| | | |
Sbjct 1728 TC-TATCCATGAATGTAGATCCAAGCTACAACTTTATTGATAGGAATCATCAACCAGCAG 1786
Query 2017 CGAGG-GTGGAAATAATGAAGTCATCGTTCTGAGTGATTCTGATGACGAGAATGAT-TTA 2074
| | | || || |||||||||||||||| | |||||||||||||| || ||| || ||
Sbjct 1787 CAACGAGT--AA-TAATGAAGTCATCGTTTTAAGTGATTCTGATGAAGAAAATAATGTT- 1842
Query 2075 GTGATCACTCCAGGGC-CTGCATACAGTG-GTTGTCAAACAGATGGTGGACTTACTTTTC 2132
|| |||||| ||| |||| |||| || | |||||| ||||| || | | |||||
Sbjct 1843 GTAATCACTGG-GGGTTCTGCCTACAATGAGAA-TCAAACTGATGGCGGGGTAAATTTTC 1900
Query 2133 CACTGAACCCTCCTGGAATAATTAACTCATATAATGAGGACCCACACAGCATAGCTGGGG 2192
|| || |||| |||| || ||||||| |||| ||| ||||| |||| | | || |||
Sbjct 1901 CATTGCACCCACCTGT--TA-TTAACTCGTATAGTGAAGACCCTCACACCGTGGCAGGGA 1957
Query 2193 G-AAGTTCAGGCTTAGGTCTTTTC---AATGAT-GATGATGAATT-TGATACGCCCCTTT 2246
|| ||| ||||| ||||||||| || || || ||||| || ||||| || |||||
Sbjct 1958 ACAA-TTCGGGCTTGGGTCTTTTCGCCAAC-ATTGACGATGA-TTATGATATGCGCCTTT 2014
Query 2247 GGTCA-TTTCCTTCTGAAACTCCAGAAGC---CCCTGGGTTCCAACTATTTAG-ATCTGA 2301
|| || ||| |||| || | ||| | || ||| ||||||||||||||| | ||||||
Sbjct 2015 GG-CAGTTTTCTTCGGAGCC-CCA-AGGCGGACCC-GGGTTCCAACTATTT-GCATCTGA 2069
Query 2302 TGCTGACGTTTCAGGA-GGTTTAGTTGGTTTGCATCATCATAGTCCACTAAACTGTTCTC 2360
|||||| || |||| | ||||||||||| ||| | | | | ||||||| ||||| | |
Sbjct 2070 TGCTGATGTATCAG-ATGGTTTAGTTGGCTTGGAGC--C-TGGTCCACTGGACTGTACCC 2125
Query 2361 CTGAAATAAATGGAGGTTATACCATGGCTCCTGAGA---CATCAATGGCATCTGTTCCTG 2417
||| ||||| | | ||||| || || ||||| |||| |||||||| |||||||||||
Sbjct 2126 CTGCAATAAGTAGTGGTTACACAATAGCTCCAGAGATATCATCAATGCCATCTGTTCCTA 2185
Query 2418 TGGTTCCTGGCTCTACT-GGCCGAT-CT--G-A-A-GCAAACGATGGCCTAGTTGACAAT 2470
|| |||| | | | | || |||| | | | | ||||||||||| |||| |||||
Sbjct 2186 TGTTTCCAGAAT-TGGTTGGACGATGCGAAGCAGATGCAAACGATGGATTAGTCAACAAT 2244
Query 2471 CCTCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTT-TTGCCAACAAAACCAGA 2529
|||||||||||| ||||||| ||||||||||||||||||||| || ||||||| ||||||
Sbjct 2245 CCTCTTGCATTTAGTAGAGAGGATCCCTCACTTCAAATATTTCTT-CCAACAAGACCAGA 2303
Query 2530 TGCTTCAGCTCAGTCGGGTTTTAAAAAC-CAAGCTGATATGTCAAATGGT-CTCCGTAGT 2587
| | ||||||||||| | ||| || || || || || ||||||| || | || ||||
Sbjct 2304 TACCTCAGCTCAGTCTGATTT-AAGAAGTCAGGCCGAGGTGTCAAACGGAACCCC-TAGT 2361
Query 2588 GAAGACTGGATCTCGCTTAGGCTAGGCGAT-AGCGCCTCTGGGA-ATCA-TGGAGATCCT 2644
|| || |||||||| |||||||| || ||| | || |||| | || | | | | |
Sbjct 2362 GACGATTGGATCTCTCTTAGGCTTGGTGATCA-CG-----GGGAGA-CAATTG-G-TG-T 2411
Query 2645 GCAACTACAAACGGGATT-AACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGA 2703
|| ||| | | | | || ||| || ||| |||| || ||||| ||| || ||||
Sbjct 2412 --AA--ACAGA-GTTAATGAAAACAA-CC--CAG-TGTCGACCAGGGAGGGTACTCTGGA 2462
Query 2704 TACTACAACAGAGACTGCGTCGTTGCTTCTGGGTATGAATGACAGTAG-A--CAAGACAA 2760
|||| |||||||||||| |||||||||||| |||||||||||||| | ||||| ||
Sbjct 2463 TACTTTGTCAGAGACTGCGTTGTTGCTTCTGGGAATGAATGACAGTAGTAAGCAAGAGAA 2522
Query 2761 GGCAAAGAAG-CAAAGATCAGATAATCCATTTTCATTTCCTCGCCAGAAGCGTTCTGTAA 2819
||||| | || ||||||||||||| ||| ||||| |||||||| |||||||| || ||||
Sbjct 2523 GGCAA-GTAGACAAAGATCAGATAGTCCGTTTTCGTTTCCTCGGCAGAAGCGATCAGTAA 2581
Query 2820 GACCTCGGATGTACCTCTCCATTGACTCGGATTCTGAA 2857
|||| ||| |||| ||||| |||||||| ||||| |||
Sbjct 2582 GACCCCGGCTGTATCTCTCAATTGACTCAGATTCAGAA 2619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121622152285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5