BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60440.1 Length=1131 Score E Sequences producing significant alignments: (Bits) Value Ahg358254 jgi|Araly1|358254|fgenesh1_pg.C_scaffold_8002041 1131 0.0 > Ahg358254 jgi|Araly1|358254|fgenesh1_pg.C_scaffold_8002041 Length=876 Score = 1131 bits (612), Expect = 0.0 Identities = 814/906 (90%), Gaps = 36/906 (4%) Strand=Plus/Plus Query 36 atggtgaaaaaaagcaaaggtcgtcaaaaaatagagatggtcaaaatgaaaaatgaaaGT 95 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAAGAAAAGCAAAGGTCGTCAAAAAATAGAGATGGTCAAAATGAAAAATGAAAGT 60 Query 96 AACCTTCAAGTTACTTTTTCAAAAAGAAGATCTGGACTTTTCAAAAAGGCTAGTGAGCTT 155 ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 61 AACCTCCAAGTTACTTTTTCAAAAAGAAGATCCGGACTTTTCAAGAAGGCTAGTGAGCTT 120 Query 156 TGCACACTTTGTGGTGCAGAAGTGGCCATAGTTGTGTTCTCACCTGGTCGAAAAGTCTTT 215 ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 121 TGCACACTTTGTGGTGCAGAAATCGCCATAGTTGTGTTTTCACCTGGTCGAAAAGTCTTT 180 Query 216 TCTTTTGGTCATCCAAATGTTGATTCTGTAATTGATCGATTCATAAACAATAACCCTCTA 275 |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| | Sbjct 181 TCTTTTGGCCATCCTAATGTTGAATCTGTAATTGATCGATTTTTAAACAATAACCCTCCA 240 Query 276 CCTCCTCACCAACACAACAACATGCAACTTAGAGAAACTCGTCGAAATTCGATTGTTCAG 335 | | |||||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 241 CTTTCTCACCAACACAACAACATGCAACTTAGTGAGACTCGTCGAAACTCTATTGTTCAG 300 Query 336 GATCTGAATAATCATCTTACTCAGGTGTTGAGTCAATTagaaacagagaaaaagaagtac 395 || ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| Sbjct 301 GAGCTGAATAATCATCTTACTCAGGTGTTGAGCCAATTAGAATCGGAGAAAAAGAAGTAT 360 Query 396 gacgagttaaagaaaataagagaaaagacaaaagCCCTTGGGAATTGGTGGGAAGATCCC 455 || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 361 GATGAGTTAAAGAAAATAAGAGAAAAAACAAGAGCCCTTGGGAATTGGTGGGAAGATCCC 420 Query 456 GTTGAGGAACTTGCGTTATCTCAACTCGAGGGGTTCAAAGGTAATCTTGAAAATTTGAAG 515 ||||| |||||| | ||| |||||||||| || ||||||||||||||||||||||||||| Sbjct 421 GTTGAAGAACTTACATTACCTCAACTCGATGGATTCAAAGGTAATCTTGAAAATTTGAAG 480 Query 516 AAAGTAGTTACAGTCGAAGCTTCCAGATTTTTTCAGGCAAATGTTCCAAACTTCTATGTG 575 |||||||||||||||||||| |||| || |||||| |||| |||||||||||||||||| Sbjct 481 AAAGTAGTTACAGTCGAAGCCTCCAAATATTTTCAAGCAACTGTTCCAAACTTCTATGTC 540 Query 576 GGAAGTTCTAGTAATAATGCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCCTGAT 635 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 541 GGAAGTTCTAGTAAT---GCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCATGAT 597 Query 636 ATGGATCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCCTTCAACTACAACCAGAAC 695 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 598 TTGGACCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCATTCAACTACAACCAGAAC 657 Query 696 CAAATTCACCCTAATCATGCATTACCACCCTTTGGAAACAATGCTTATGGT-AT-T-AAT 752 || ||||||||||||| |||||||| ||||||||||||||||||||| || | ||| Sbjct 658 CAGATTCACCCTAATCCCGCATTACCG---TTTGGAAACAATGCTTATGGTCATATTAAT 714 Query 753 GAAGGGTTTGTTCCAGAATACAATGTGAACTTCAGACCAGAGTATAACccaaaccaaaac 812 ||||| |||||||| || |||||| |||||| |||||||||||||| || ||| | | Sbjct 715 GAAGGATTTGTTCCGGACTACAATATGAACTACAGACCAGAGTATATCC-AAA--A---C 768 Query 813 caaatccaaaaccaaaatcaagttcaaatccaaatccaaaaccaGAGTTTTAAGAGAGAA 872 ||| | | |||||| ||| || ||||| | || |||||||||||||||| Sbjct 769 CAA-T--A---CCAAAACCAA----AA--CCAAA---A---CCTGAGTTTTAAGAGAGAA 810 Query 873 AACATCTCTGAATATGA--AC-ATCATCATGGTTATCCTCCCCAGTCTAGATCTGATTAC 929 ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 811 AACATCTCTGAATATGAGCACCATCATCATGGTTATCCTCCCCACTCTAGATCTGATTAC 870 Query 930 TATTAA 935 |||||| Sbjct 871 TATTAA 876 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42163946202 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5