BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60440.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358254 jgi|Araly1|358254|fgenesh1_pg.C_scaffold_8002041 1131 0.0
> Ahg358254 jgi|Araly1|358254|fgenesh1_pg.C_scaffold_8002041
Length=876
Score = 1131 bits (612), Expect = 0.0
Identities = 814/906 (90%), Gaps = 36/906 (4%)
Strand=Plus/Plus
Query 36 atggtgaaaaaaagcaaaggtcgtcaaaaaatagagatggtcaaaatgaaaaatgaaaGT 95
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAAGAAAAGCAAAGGTCGTCAAAAAATAGAGATGGTCAAAATGAAAAATGAAAGT 60
Query 96 AACCTTCAAGTTACTTTTTCAAAAAGAAGATCTGGACTTTTCAAAAAGGCTAGTGAGCTT 155
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 AACCTCCAAGTTACTTTTTCAAAAAGAAGATCCGGACTTTTCAAGAAGGCTAGTGAGCTT 120
Query 156 TGCACACTTTGTGGTGCAGAAGTGGCCATAGTTGTGTTCTCACCTGGTCGAAAAGTCTTT 215
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 121 TGCACACTTTGTGGTGCAGAAATCGCCATAGTTGTGTTTTCACCTGGTCGAAAAGTCTTT 180
Query 216 TCTTTTGGTCATCCAAATGTTGATTCTGTAATTGATCGATTCATAAACAATAACCCTCTA 275
|||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 181 TCTTTTGGCCATCCTAATGTTGAATCTGTAATTGATCGATTTTTAAACAATAACCCTCCA 240
Query 276 CCTCCTCACCAACACAACAACATGCAACTTAGAGAAACTCGTCGAAATTCGATTGTTCAG 335
| | |||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 241 CTTTCTCACCAACACAACAACATGCAACTTAGTGAGACTCGTCGAAACTCTATTGTTCAG 300
Query 336 GATCTGAATAATCATCTTACTCAGGTGTTGAGTCAATTagaaacagagaaaaagaagtac 395
|| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 301 GAGCTGAATAATCATCTTACTCAGGTGTTGAGCCAATTAGAATCGGAGAAAAAGAAGTAT 360
Query 396 gacgagttaaagaaaataagagaaaagacaaaagCCCTTGGGAATTGGTGGGAAGATCCC 455
|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 361 GATGAGTTAAAGAAAATAAGAGAAAAAACAAGAGCCCTTGGGAATTGGTGGGAAGATCCC 420
Query 456 GTTGAGGAACTTGCGTTATCTCAACTCGAGGGGTTCAAAGGTAATCTTGAAAATTTGAAG 515
||||| |||||| | ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 421 GTTGAAGAACTTACATTACCTCAACTCGATGGATTCAAAGGTAATCTTGAAAATTTGAAG 480
Query 516 AAAGTAGTTACAGTCGAAGCTTCCAGATTTTTTCAGGCAAATGTTCCAAACTTCTATGTG 575
|||||||||||||||||||| |||| || |||||| |||| ||||||||||||||||||
Sbjct 481 AAAGTAGTTACAGTCGAAGCCTCCAAATATTTTCAAGCAACTGTTCCAAACTTCTATGTC 540
Query 576 GGAAGTTCTAGTAATAATGCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCCTGAT 635
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 GGAAGTTCTAGTAAT---GCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCATGAT 597
Query 636 ATGGATCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCCTTCAACTACAACCAGAAC 695
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 TTGGACCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCATTCAACTACAACCAGAAC 657
Query 696 CAAATTCACCCTAATCATGCATTACCACCCTTTGGAAACAATGCTTATGGT-AT-T-AAT 752
|| ||||||||||||| |||||||| ||||||||||||||||||||| || | |||
Sbjct 658 CAGATTCACCCTAATCCCGCATTACCG---TTTGGAAACAATGCTTATGGTCATATTAAT 714
Query 753 GAAGGGTTTGTTCCAGAATACAATGTGAACTTCAGACCAGAGTATAACccaaaccaaaac 812
||||| |||||||| || |||||| |||||| |||||||||||||| || ||| | |
Sbjct 715 GAAGGATTTGTTCCGGACTACAATATGAACTACAGACCAGAGTATATCC-AAA--A---C 768
Query 813 caaatccaaaaccaaaatcaagttcaaatccaaatccaaaaccaGAGTTTTAAGAGAGAA 872
||| | | |||||| ||| || ||||| | || ||||||||||||||||
Sbjct 769 CAA-T--A---CCAAAACCAA----AA--CCAAA---A---CCTGAGTTTTAAGAGAGAA 810
Query 873 AACATCTCTGAATATGA--AC-ATCATCATGGTTATCCTCCCCAGTCTAGATCTGATTAC 929
||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 811 AACATCTCTGAATATGAGCACCATCATCATGGTTATCCTCCCCACTCTAGATCTGATTAC 870
Query 930 TATTAA 935
||||||
Sbjct 871 TATTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5