BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60450.1
Length=3114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496192 jgi|Araly1|496192|fgenesh2_kg.8__2008__AT5G60450.1 3895 0.0
Ahg906919 jgi|Araly1|906919|Al_scaffold_0003_4047 388 1e-106
> Ahg496192 jgi|Araly1|496192|fgenesh2_kg.8__2008__AT5G60450.1
Length=3035
Score = 3895 bits (2109), Expect = 0.0
Identities = 2494/2669 (93%), Gaps = 70/2669 (3%)
Strand=Plus/Plus
Query 328 TTTGCCTCTTCTTTGTGAAATTTAGC-TGAAAAAGGAGAGGAATTCCGAATTCTGTCACT 386
||||| |||||||||||||||||| | || ||||||||| |||||| |||||||||||||
Sbjct 279 TTTGCTTCTTCTTTGTGAAATTTA-CTTG-AAAAGGAGAAGAATTCTGAATTCTGTCACT 336
Query 387 TCAAAGCTCGAATTTTGCAAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATCTG 446
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 337 TC-AAGCTCAAATTTTGCCAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATTTG 395
Query 447 ATTAAAAATAGAAACTTTTTG--TTTTCTTCTTGTCTCCTTTTGCT-CTTAAAAGAGAAG 503
||||||||||||||||||||| |||| ||||| ||| ||| | || |||
Sbjct 396 ATTAAAAATAGAAACTTTTTGTTTTTTTTTCTT-TCTTCTTGT-CTCCTT---------- 443
Query 504 CTTTTTCAATGGAATTTGACTTGAATACTGAGATTGCggaggtggaagaggaggagaatg 563
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 444 -TTTTTCAATGGAATTTGACTTGAATACTGAGATTGCGGAGGTGGAAGAGGAAGAGAATG 502
Query 564 atgatgtaggagtaggagtaggaggaggaACAAGAATTGACAAGGGTAGGCTTGGAATTT 623
|||| | |||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 503 ATGA--T----GTAGGAGT---AGGAGGAACAAGAATTAACAGGGGTAGGCTTGGAATTT 553
Query 624 CACCATCTTCTTCTTCTTCATGCTCTTCCGGATCATCATCGTCATCATCTTCTACAGGCT 683
|||| || ||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 554 CACCGTCCTCTTCTTCTTCATGCTCTTCCGG---ATCA---TCATCATCTTCTACAGGCC 607
Query 684 CTGCATCTTCCATTTACTCTGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 743
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 CTGCATCTTCCATTTACTCTGAGCTGTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 667
Query 744 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCTCAAGGTCATTTGGAGCAAGATGCTATGG 803
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 668 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCACAAGGTCATTTGGAGCAAGATGCTATGG 727
Query 804 TTTCATATTCGTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCGTCTGCA 863
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 728 TTTCTTATTCTTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCTTCTGCA 787
Query 864 GGGTGGTTAATGTCCAGTTGCTTGCTAATAAGGACACCGATGAGGTCTACACTCAAGTCA 923
|||||||| ||||||| |||||||| |||||||| || |||||||| |||||||||||||
Sbjct 788 GGGTGGTTCATGTCCAATTGCTTGCCAATAAGGAAACTGATGAGGTTTACACTCAAGTCA 847
Query 924 CTCTGCTTCCACTTCAAGAGTTTTCGATGCTAAATGGGGAGGGGAAAGAGGTCAAGGAGT 983
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 848 CTCTGCTTCCACTCCAAGAGTTTTCGATGCTAAATACGGAGGGGAAAGAGGTCAAGGAGT 907
Query 984 TAGGAGGGGAGGAAGAGAGGAACGGAAGCTCATCCGTCAAGCGGACACCTCATATGTTCT 1043
|||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 908 TAGGAGGGGACGAAGAGAGGAACGGAAGCTCATCTGTCAAACGAACACCGCATATGTTCT 967
Query 1044 GTAAAACCTTAACAGCGTCTGACACAAGCACACATGGAGGCTTCTCTGTACCTAGAAGAG 1103
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 968 GCAAAACCTTAACAGCTTCTGACACAAGCACCCATGGAGGCTTCTCTGTACCTAGAAGAG 1027
Query 1104 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1087
Query 1164 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1147
Query 1224 GGAGGCATCTACTCACCACTGGTTGGAGTATCTTTGTCAGTCAAAAGAATCTCGTCTCTG 1283
||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct 1148 GGAGGCATCTACTCACCACTGGTTGGAGTATATTTGTTAGTCAAAAGAATCTAGCCTCTG 1207
Query 1284 GTGATGCGGTTCTCTTTCTGAGAGACGAAGGAGGAGAGCTGAGATTAGGAATCAGAAGAG 1343
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1208 GTGATGCCGTTCTCTTTCTGAGAGACGAAGGTGGAGAGCTGAGATTAGGAATAAGAAGAG 1267
Query 1344 CAGCACGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAATTCATGTTCAAACA 1403
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1268 CAGCAAGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAACTCATGTTCGAACA 1327
Query 1404 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTCTACAGTC 1463
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1328 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTTTACAGTC 1387
Query 1464 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGA 1523
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1388 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATGTCACAAGCATCAGGA 1447
Query 1524 GTCCTGTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGA 1583
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1448 ATCCCATTTGCATAGGCACAAGATTCAGAATGCGATTTGAAATGGACGACTCTCCTGAGA 1507
Query 1584 GAAGATGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1643
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GAAGATGCGCTGGAGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1567
Query 1644 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAA 1703
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1568 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCATTTGTGAGTGATCATCAAGAAA 1627
Query 1704 GAGTTTCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCAT 1763
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1628 GAGTTTCACCTTGGGAGATTGATCCCTCGATTTCTCTCCCACACTTAAGCATTCAGTCAT 1687
Query 1764 CTCCAAGGCCTAAAAGGCCATGGGCAGGTTTACTGGATACTACCCCACCCGGAAACCCCA 1823
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1688 CTCCAAGGCCTAAAAGGCCGTGGGCAGGTTTACTGGATACTACTCCACCCGGAAACCCCA 1747
Query 1824 TAACAAAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1883
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 TAACCGAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1807
Query 1884 AAGGTCAAGAAAATATAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1943
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 AAGGTCAAGAAAATTTAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1867
Query 1944 GGATACTGGATTTTGCGATGCAGTCTCATGCAAATCCAGTTCTTGTGTCGAGTAGAGTCA 2003
||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
Sbjct 1868 AGATACTGGATTTTGCGATGCAGTCTCACGCAAGTCCAGTTCTTTTGTCGAGTAGAGTGA 1927
Query 2004 AGGATCGATTTGGTGAGTTTGTAGATGCTACTGGCGTGAACCCAGCTTGTTCAGGTGTTA 2063
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1928 AGGATCGATTTGGTGAGTTTGTAAATGCTACTGCCCTGAACCCAGCTTGTTCAGGTGTTA 1987
Query 2064 TGGACCTGGATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 TGGACCTGGACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2047
Query 2124 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCT-C-------C----T-----A-AT- 2164
||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 2048 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCTTCAGGTAAACCAAATCTTGGATATA 2107
Query 2165 C----CC-TTTGCTTACCAAGCCAACAAGTCAAGTTACTATCCGCTAGCTTTGCATGGGA 2219
| || ||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2108 CTGATCCCTTTGCGTACCAAGCCAACAAGTCAAGTTTCTATCCGCTAGCTTTACATGGGA 2167
Query 2220 TTAGGAGCACTCATGTTCCGTATCAGAATCCATACAATGCGGGAAACCAATCCTCGGGTC 2279
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2168 TTAGGAGCACTCATGTTCCATATCAGAATCCATACAATGCGGGAAATCAATCCTCGGGTC 2227
Query 2280 CCCCTTCACGTGCAATAAACTTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGAAG 2339
|||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2228 ACCCTTCTCCTGCAATAAACGTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGGAG 2287
Query 2340 GTGGCCTACCAAATAATGTTACAGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2399
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2288 GTGGCCTACCGAATAATGTTACCGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2347
Query 2400 AGAAAGGCAGTGAGTTGAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2459
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 AGAAAGGCAGTGACTTTAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2407
Query 2460 TACCAGTGGAGACACCTGCATCTAAGCCGCAAAGCTCGAGCAAAAGAATCTGTACAAAGG 2519
|||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 2408 TACCCGTGGAGACACCTGCATCTAACCCGCAAAGCTCGAGCAAAAGGATATGTACAAAGG 2467
Query 2520 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTGTCGCGACTTAACGGGTATG 2579
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 2468 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTATCCCGACTAAACGGTTATG 2527
Query 2580 ATGATCTCCTTATGGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2639
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 ATGATCTCCTTACCGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2587
Query 2640 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2588 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2647
Query 2700 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2648 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2707
Query 2760 TGGAGAATGCGAATGACGATAACAAGAGTTGTTTAGAGCAAGCTGCTCTCATGATGGAAG 2819
|||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2708 TGGAGAATGCGAATGATGATAACAAGAGTTGTTTAGAACAAGCTGCTATCATGATGGAAG 2767
Query 2820 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2768 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2827
Query 2880 A----C--CC-AT-AAAGAAGCTTATTTCCT-ATGTT-TTAAAGTGTGTTTTGCTCACAA 2929
| | || | |||||||||||||| || ||||| || |||||||||||||| ||||
Sbjct 2828 AAAAACAACCCAAGAAAGAAGCTTATTTTCTTATGTTCTTTAAGTGTGTTTTGCTGACAA 2887
Query 2930 AAGAACTTCAACTTTATCTTT-GTCTTTG 2957
|||||||||| |||||||||| || ||||
Sbjct 2888 AAGAACTTCATCTTTATCTTTTGTGTTTG 2916
Score = 324 bits (175), Expect = 3e-87
Identities = 244/273 (89%), Gaps = 21/273 (8%)
Strand=Plus/Plus
Query 4 GAAAGGGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTAtct 63
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGAGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTA--- 57
Query 64 ctccctctctttctctctctctctctctTTCCACTAAATTGttttttttttGCTCTTT-A 122
|| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 58 -------TC--TCTCTCTCTCTCTCTC--TCCACTAAATTGTTTTTTTTTTGCTCTTTAA 106
Query 123 AAAAGTATAtttttttCCAATCTGCAAA-TTTTAGTCTATGTCTGTT-C--CTTGTGCTC 178
|||||||||||||||||||||||| ||| ||||| ||| |||||||| | ||| |||||
Sbjct 107 AAAAGTATATTTTTTTCCAATCTGTAAATTTTTA-TCTCTGTCTGTTCCTTCTTCTGCTC 165
Query 179 CCTCTTCTCAGTACCTGCAAATGGAGGAAGAAGAATCCTTCTCTGAAACCCTTGTTCTCA 238
|||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||
Sbjct 166 CCTCTTCTCAGTACCTGCAAATGGAGGAGGAAGAATCATACTTTGAAACCCTTGTTCTCA 225
Query 239 TTTGATTCCTCCTTCctctctcttcttctctct 271
|||||||||||||||||||||||| ||||||||
Sbjct 226 TTTGATTCCTCCTTCCTCTCTCTT-TTCTCTCT 257
> Ahg906919 jgi|Araly1|906919|Al_scaffold_0003_4047
Length=651
Score = 388 bits (210), Expect = 1e-106
Identities = 277/306 (91%), Gaps = 18/306 (6%)
Strand=Plus/Plus
Query 1469 GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAGTCCT 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 289 GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAATCCC 348
Query 1529 GTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGAGAAGA 1588
||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||
Sbjct 349 ATTTGCATAGGCACAAGATTCATAATGCGATTTGAAATGAACGACTCTCCTGAGAGA--- 405
Query 1589 TGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACTCTAAA 1648
||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 406 TGCGCTGGTGTAGTGGCTGGAGTCTATGACTTGGACCCATATAGGTGGCCAAACTCTAAA 465
Query 1649 TGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAAGAGTT 1708
||| ||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 466 TGG---TGC--G--------ATGGGATGAGTCTT--GTGAGTGATCATCAAGAAAGAGTT 510
Query 1709 TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCATCTCCA 1768
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 511 TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTAAGCATTCAGTCATCTCCA 570
Query 1769 AGGCCT 1774
||||||
Sbjct 571 AGGCCT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117622676560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5