BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60460.1
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917793 jgi|Araly1|917793|Al_scaffold_0008_2544 505 1e-142
> Ahg917793 jgi|Araly1|917793|Al_scaffold_0008_2544
Length=330
Score = 505 bits (273), Expect = 1e-142
Identities = 305/321 (95%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 17 ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGGTTCTTCAACCGCCCGG 76
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGCCTCCTCAACCGCCCGG 60
Query 77 CCCGGTCTGGCCGCTCCTCGTGGTTCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG 136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCGGTCTGGCCGCTCCTCGTGGATCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG 120
Query 137 CTCGGTGGCGGTGGTGGCGTATCCTCAGGCGGCGGATCTGGAGTTGGATCAGGATCGAGC 196
||||||||||||||| |||||||||||||||||||||| | || ||||||||||||| ||
Sbjct 121 CTCGGTGGCGGTGGTAGCGTATCCTCAGGCGGCGGATCCGCAGCTGGATCAGGATCGGGC 180
Query 197 AACATGCTGAGATTCTACACAGATGATGCTCCGGGGTTGAAGATCTCACCGACGGTTGTT 256
|||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||
Sbjct 181 AACATGCTGAGATTCTACACAGATGAAACTCCAGGGTTGAAGATCTCACCGACAGTCGTT 240
Query 257 CTGATCATGAGTCTCTGTTTCATCGGCTTCGTCACTGCTCTTCACGTCTTTGGAAAACTC 316
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTGATCATGAGCCTCTGTTTCATCGGCTTCGTCACCGCTCTTCACGTCTTTGGAAAACTC 300
Query 317 TACCTCCACAAATCCGGATCC 337
|||||||||||||||||||||
Sbjct 301 TACCTCCACAAATCCGGATCC 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18123904775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5