BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60470.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917794 jgi|Araly1|917794|Al_scaffold_0008_2545 1812 0.0
> Ahg917794 jgi|Araly1|917794|Al_scaffold_0008_2545
Length=1353
Score = 1812 bits (981), Expect = 0.0
Identities = 1255/1381 (91%), Gaps = 44/1381 (3%)
Strand=Plus/Plus
Query 1 ATGATGATTCCACATAATCATGACCGCCTCTCATTCTCTAGCTTTGTCCATGACC---AA 57
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGATGATTCCACATAATCATGACCGCCTCTCATTCTCTAGCTTTGTCCATGACCAAGAA 60
Query 58 GAGCACATCACCCCT-AATCCTTA-CCCTAACTCTCAGCCTGCAGCCTCCACTAAAACAC 115
||| |||||| || | ||||| || |||||| ||||||||| ||||||||||||| ||||
Sbjct 61 GAGAACATCA-CCATAAATCC-TAGCCCTAAGTCTCAGCCTCCAGCCTCCACTAACACAC 118
Query 116 CCAAGAAAAAGAGAAACCTTCCAGGAAATCCAGGCA--TATCCAAATGCAGAAGTCATCT 173
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 119 CCAAGAAAAAGAGAAACCTCCCAGGAAATCCAGGCATGTATCCAAATGCAGAAGTCATCG 178
Query 174 CTCTATCTCCAAAATCCCTCATGGCGACAAATCGGTTCTTTTGTGAAATTTGTAACAAGG 233
||||||| ||||| |||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 179 CTCTATCGCCAAACTCCCTCATGGCGACAAATCGGTTCTTCTGCGAAATCTGCAACAAGG 238
Query 234 GGTTTCAGAGAGAACAGAACCTTCAGCTCCACAAAAGAGGCCACAACCTGCCATGGAAGC 293
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 239 GGTTTCAGAGAGAACAGAACCTTCAGCTTCACAAACGAGGCCACAACCTGCCATGGAAGC 298
Query 294 TGAAGCAGAAAACGAACAAGAATCAGGTGAAGAAGAAAGTTTATATATGCCCTGAGAAGA 353
| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 299 TTAAGCAGAAAACAAACAAGAATCAGGTGAAGAAGAAAGTTTATATTTGCCCCGAGAAGA 358
Query 354 GTTGCGTCCATCATGATCCAGCTCGAGCCCTAGGAGACCTTACTGGAATAAAGAAGCACT 413
|||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 359 GTTGTGTCCATCATGATCCAGCTCGAGCCCTAGGCGACCTCACTGGAATCAAGAAGCACT 418
Query 414 TTAGCAGGAAACATGGAGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAGAAGTATGCTG 473
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 419 TTAGCAGGAAACATGGAGAGAAGAAGTGGAAATGCGACAAGTGTTCCAAAAAGTATGCTG 478
Query 474 TGATATCCGATTGGAAAGCTCATAACAAGATTTGTGGTAGCAGAGAGTTTAGATGTGATT 533
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TGATATCCGATTGGAAAGCTCATAACAAGATCTGTGGTAGCAGAGAGTTTAGATGTGATT 538
Query 534 GTGGTACTCTTTTCTCCAGGAAGGACAGTTTCATCTCACATAGATCCTTCTGTGATGTCT 593
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 GTGGTACCCTCTTCTCCAGGAAGGAAAGTTTCATCTCACATAGATCCTTCTGTGATGTCT 598
Query 594 TAGCTGAAGAAAGTTCTAAATTCTTCTCAGTTCCTTCACCATTAGCCGCCAATTCGACCA 653
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 599 TAGCTGAAGAAAGTTCTAAATTCTTCTCAGTTCCATCACCTTTAGCCGCCAATTCGACTA 658
Query 654 TCGCCACTGTCA-CTGATACCAACAATCCAATTCTCATTCAATCACAATTGGATCAATCT 712
|||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 TCGCCACTGT-AGCTGATATCAACAATCCAATTCTTATTCAATCACAATTGGATCAATCT 717
Query 713 TCCACAGGTACGGCCGATCTTAACGTCAACAACAATCACACCACCCTATTTGGACAAAAG 772
|||| || || | |||||||||||||||||||||| | | | | || |
Sbjct 718 TCCA----TA-GG----T---AACGTCAACAACAATCACACCAGC-T-T----A-AA--G 756
Query 773 TTCACCAACTCCAACCCAACCCAACAACAACCCAATGCTTTGGCGTTGTCCTCACCACCA 832
||||| ||||||||||||| |||||||||| |||||||||| ||| |||||||| |||||
Sbjct 757 TTCACAAACTCCAACCCAATCCAACAACAAGCCAATGCTTTTGCGCTGTCCTCAGCACCA 816
Query 833 TCACCTCGT-AGTACATCTGATTCGGTTCATAATCTATGGAAGTTACAAGAAGAGGAATG 891
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCACCT-GTTACTACATCTGATTCGGTTCATAATCTATGGAAGTTACAAGAAGAGGAATG 875
Query 892 TGCACACCAGTGGTTACTCAATGAATATATGAACAATAACAAAAACAT-ATTCCATAAGG 950
| |||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||
Sbjct 876 TTCACACCAGTGGTTACTCAATGAATATATGAACAACGACAAAAACATTATTC-AGAAGG 934
Query 951 GAATATTCAAGAATCAAGAAGATGAGATAAAGAAGGGAAATATCTACAGCGGCTCAAACC 1010
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 935 GAATATTCAAGAATCAAGAAGATGAGATCAAGAAGGGAAATATCTACAGCGGCTCGAACC 994
Query 1011 CAACCGATGGAAACATAGCATCCTTGTTCTCGTATAATCAAGAAGCAGTGAATATGGCTT 1070
||||||||| ||| | |||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 995 CAACCGATGCAAATACAGCATCCTGGCTCTCGTATAGTCAAGAAGCAGGGAATATGGCTT 1054
Query 1071 CATTTTCGGCAACAACATTGCTTCAAAAGGTAGCTCAAACGGGAACACCATCAAGCTCCG 1130
|||| ||||| |||||||||||||| ||||| ||||||| |||| || ||||||||||||
Sbjct 1055 CATTGTCGGCGACAACATTGCTTCATAAGGTGGCTCAAATGGGATCATCATCAAGCTCCG 1114
Query 1131 AAACTAGCACCACCATGTTTGGGCAAATGACTTCCTCCATCTTCAACAATACGAT-GCTA 1189
| |||||||||| ||||||||| |||||||||||||||||||||||||| || || |
Sbjct 1115 ACACTAGCACCA---TGTTTGGGCTCATGACTTCCTCCATCTTCAACAATAC-ATTGCCA 1170
Query 1190 AACTCCTATTGTTT-AACGGCGAAGAATAATGAAGAAGAGTTGACCAGAGACTTTCTTGG 1248
|| ||| ||||||| || |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1171 AAATCCAATTGTTTCAA-GGCGAACAATAAGGAAGAAGAGTTGACCAGAGACTTTCTTGG 1229
Query 1249 TGTGGGAAGTAGTGAGGACCAACAACGTCTACATCGTCATCGCTTCCCATCAAGCGTGCC 1308
|||||||||| ||| |||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 1230 TGTGGGAAGTCCTGACGACCAACAACAACTACATCATCATCACTTCCCATCAAGCGTGCC 1289
Query 1309 ATTGACGGCGAACCATGATATTCCCAAGTTGGCCGCAACCATTGTAGGCA-GGAAGCAAC 1367
|||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||||
Sbjct 1290 ATTGACGGTGAACCATAATGCTCCCAAGTTGGCTGCAACCATTGTAGGCAAGGAAGCAAC 1349
Query 1368 C 1368
|
Sbjct 1350 C 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5