BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60490.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496195 jgi|Araly1|496195|fgenesh2_kg.8__2011__AT5G60490.1 1190 0.0
> Ahg496195 jgi|Araly1|496195|fgenesh2_kg.8__2011__AT5G60490.1
Length=867
Score = 1190 bits (644), Expect = 0.0
Identities = 748/799 (94%), Gaps = 3/799 (0%)
Strand=Plus/Plus
Query 1 ACACAAACAAAATATCAACACTCTTGAAAACAGAGCCATGGAACATtctctcatcatcct 60
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||
Sbjct 1 ACACAAACAAAATATCAACATTCTTGATAACAAAGCCATGGAACATTCTCTCATCCTCCT 60
Query 61 cctcttcaccgtcctcctcctcctcaccaccactcccggaatcc-tatctcagccctctc 119
|||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||
Sbjct 61 CCTCTTCACCGTCCTCGTCCTACTCACCACCACTCCCGGAA-CCTTATCTCAGCCCTCTC 119
Query 120 cAGCCGTCGCTCCGGCCCCACCAGGACCCACAAACGTTACCAAAATCCTAGAGAAAGCTG 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGCCGTCGCTCCGGCACCACCAGGACCCACAAACGTTACCAAAATCCTAGAGAAAGCTG 179
Query 180 GTCAATTCACCGTCTTCATCCGACTCCTCAAATCCACTGGAGTCGCTAACCAACTCTACG 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GTCAATTCACCGTCTTTATCCGACTCCTCAAATCCACCGGAGTCGCTAACCAACTCTACG 239
Query 240 GCCAACTAAACAACTCCGACAATGGAATCACTATATTCGCACCGAGTGATTCCTCGTTCA 299
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GCCAACTAAAGAACTCCGACAATGGAATCACTATCTTCGCACCGAGTGATTCCTCGTTCT 299
Query 300 CCGGTCTCAAAGCCGGGACCCTAAATTCGTTAACCGATGAGCAACAAGTAGAGCTTATTC 359
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 300 CCGGCCTCAAAGCCGGAACCCTAAATTCCTTAACCGACGAGCAACAAGTAGAGCTTATTC 359
Query 360 AGTTTCATGTCATACCAAGTTACGTCTCTTCCTCAAACTTCCAAACAATAAGTAACCCTC 419
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 360 AGTTTCATGTCATACCAAGTTACGTTTCTTCCTCTAACTTCCAAACGATAAGTAACCCTC 419
Query 420 TCCGGACTCAGGCCGGTGACTCCGCCGATGGACATTTTCCTCTCAACGTTACCACCAGTG 479
| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 420 TACGGACTCAGGCCGGTGCCTCTGCCGATGGACATTTTCCACTTAACGTTACCACCAGTG 479
Query 480 GCAATACCGTAAATATCACGTCCGGCGTAACCAACACCACCGTCTCCGGCAATGTCTACA 539
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 480 GCAATACCGTAAATATCACGACCGGTGTAACCAACACCACCGTCTCCGGTAATGTCTACA 539
Query 540 GCGATGGACAGCTCGCTGTTTATCAGGTCGATAAGGTTTTGCTTCCACAACAAGTTTTCG 599
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 540 GCGATGGACAACTCGCTGTTTACCAGGTCGATAAGGTTTTGCTTCCACAGCAAGTTTTCG 599
Query 600 ATCCTCGTCCTCCTGCTCCGGCTCCGGCTCCGTCTGTATCGAAATCAAAGAAGAAGAAGG 659
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 600 ATCCTCGTCCACCTGCTCCGGCTCCGGCTCCGTCAGTCTCGAAATCAAAGAAGAAGAAGG 659
Query 660 ATGACAGTGATAGTTCCAGTGATGATTCTCCGGCGGATGCTTCGTTTGCTTTGCGTAATG 719
| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
Sbjct 660 AAGACAGTGATAGTTCCGGTGATGATACTCCGGCGGATGCTTCGTTTGCTTCACGTAACG 719
Query 720 TTGGTTCTGTGTGTGATGCGGTGTCGTTTTGCGTCATGAGTGTAATGCTCGCATGGTTTT 779
|||||||| || |||||||||||||||||||| ||||||| | | | |||| ||||||||
Sbjct 720 TTGGTTCTCTGCGTGATGCGGTGTCGTTTTGCTTCATGAGCGCATTACTCGGATGGTTTT 779
Query 780 ATTTGTGATGAAAAGCttt 798
||||||||||| ||| |||
Sbjct 780 ATTTGTGATGATAAG-TTT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5