BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60510.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496196 jgi|Araly1|496196|fgenesh2_kg.8__2012__AT5G60510.1 1668 0.0
> Ahg496196 jgi|Araly1|496196|fgenesh2_kg.8__2012__AT5G60510.1
Length=1072
Score = 1668 bits (903), Expect = 0.0
Identities = 1019/1075 (95%), Gaps = 7/1075 (1%)
Strand=Plus/Plus
Query 189 CCTCCGATAACCAAAAAATCCCTATTTTCCGAGATGAATAATACACGAGAAGAAGTAGGG 248
|||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1 CCTCTGATAACCAAAAAAGCCCGATTTTCCGAGATGAATAATACCCGAGAAGAAGTAGGC 60
Query 249 GAATTCACTCAAATCTTCAACGCTTTAATGAGTCTTATGAGGAAATTTATATTCAAAGTT 308
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 61 GAATTCACTCAAATCTTCAACGCTTTAATGAGTCTAATGAGGACATTTATATTCAAAGTT 120
Query 309 CTACGCGTCGGTCCAATCCCTACTAACATTTCTTTCATCATGGATGGAAACCGTAGGTTC 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 CTACGCGTCGGTCCAATCCCTACTAACATTTCATTCATCATGGATGGAAACCGCAGGTTC 180
Query 369 GCCAAGAAACGCAATCTTGAAGGCCTAGACGCAGGACACAGAGCTGGTTTCATATCCGTC 428
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 181 GCCAAGAAACGCAATCTTGAAGGCTTAGACGCAGGACACAGAGCCGGTTTCATATCCGTG 240
Query 429 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTATGTCACACTCTACGCATTT 488
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 241 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTACGTCACACTCTACGCCTTT 300
Query 489 GGTATGGACAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTGATGGATCTAATGCTT 548
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GGTATGGACAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTCATGGATCTAATGCTG 360
Query 549 GAGAAAGTCGAGCTCACGATCGATCAAGCTGTATCAGGGAATATGAACGGCGTGAGAATA 608
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 361 GAGAAAGTCGAGCTCACGATTGATCAAGCTGTATCCGGGAATATGAACGGCGTGAGAATT 420
Query 609 ATCTTTGCCGGCGATTTGAATTCGTTAAACGAGCGTTTTAGAGCTGCGACAAAGAAACTG 668
||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 421 ATCTTTGCCGGTGATTTGAATTCGTTAAACGAGCATTTTAGAGCTGCGACGCAGAAACTG 480
Query 669 ATGGAGCTTACGGAGGAGAACAGAGATCTGATTGTTGTGGTTTGCGTTGCTTATAGCACA 728
||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 ATGAAGCTTACGGAGGAGAATAGAGATCTGATTGTTGTGGTTTGCGTTGCTTACAGCACA 540
Query 729 AGTGTCGAGATTGTTCACGCTGTTCGAGATTCTTGTGTTAGAAAGAGTAAAACTGGAGAT 788
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 541 AGTGTCGAGATTGTTCATGCTGTTCGAGATTCTTGCGTTAGAAAGAGTAAAATTGGAGAT 600
Query 789 GGTTCT-TCAGCTTTGGAGTTGAGTGATATTGAAGAGTGTATGTATACATCGGTTGTGCC 847
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTTCTGT-AGCTTTGGAGTTGAGTGATATTGAAGAGTGTATGTATACATCGGTTGTGCC 659
Query 848 GGTTCCGGATCTTGTGGTAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGACGTG 907
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTTCCGGATCTTGTGATAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGACGTG 719
Query 908 GCAAACTTCTAGGGCACTTCTTCATAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCTATG 967
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 720 GCAAACTTCTAGGTCACTTCTTCACAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCTCTG 779
Query 968 GCATTTGGTTTGGGCCATTCTGAAATTCCAGAGAATGCAAGATTACTTGCAGAAGAAGAA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCATTTGGTTTGGGCCATTCTGAAATTCCAGAGAATGCAAGATTACTTGCAGAAGAAGAA 839
Query 1028 GAAGCTCCACTAAATAGTTTCTAAGTTAAACCCTAGAATGAACTTAAACCCTTATGTTTG 1087
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 840 GAAGTTCCACTAAATAGTTTCTAAGTTAAACCCTAGAATGAACTTTAACCCTTACGTTTG 899
Query 1088 ATTACATGTTTCTTGTGGTGTAAGAAACAACGAACCGAAACTGAGAAACCACAAGAAAAT 1147
|||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 900 ATTACAGGTTTCTTGTGGTGTAAGAAACAAAGAACCGAAACTGTGAAAACACAAGAAAAT 959
Query 1148 CCTTTTTATTATGTATGGGATACAAAATAACAAAAACA--GACATAAAACATCGATAATT 1205
||||||||||||||||| |||| ||| |||||| ||| ||||| |||||||||||||
Sbjct 960 CCTTTTTATTATGTATGTGATATAAA-TAACAAGCACAAAGACATGAAACATCGATAAT- 1017
Query 1206 ATT-CAATTTAACGATGCTAAAACACTACAATTAGAGGCTTAATTAAAAGACAGT 1259
||| ||| |||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1018 ATTTCAAATTAACGATGCTAAAACACTAAAATTAGAGGCTTAATTTAAAGATAGT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5