BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60540.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496200 jgi|Araly1|496200|fgenesh2_kg.8__2016__AT5G60540.1 1557 0.0
> Ahg496200 jgi|Araly1|496200|fgenesh2_kg.8__2016__AT5G60540.1
Length=1000
Score = 1557 bits (843), Expect = 0.0
Identities = 928/969 (96%), Gaps = 6/969 (1%)
Strand=Plus/Plus
Query 154 CAATGACCGTCGGAGTTTTAGCTTTGCAAGGTTCTTTCAATGAGCACATCGCGGCTCTGC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 CAATGACCGTCGGAGTTTTAGCTTTGCAAGGTTCTTTCAATGAGCACATCGCGGCTCTGC 93
Query 214 GGCGGCTCGGTGTCCAAGGCGTCGAGATTAGGAAGGCTGACCAGCTTCTCACCGTTTCTT 273
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 94 GGCGGCTCGGTGTCCAAGGCGTCGAGATTAGGAAGGCTGAGCAGCTTCTCACCGTTTCTT 153
Query 274 CTCTTATCATTCCTGGCGGCGAGAGCACCACCATGGCCAAACTCGCCGAGTATCATAACT 333
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 154 CTCTCATCATTCCTGGCGGCGAGAGCACCACCATGGCCAAACTCGCCGAGTACCATAACT 213
Query 334 TGTTTCCGGCTCTACGTGAGTTTGTTAAGATGGGGAAACCTGTTTGGGGGACATGCGCAG 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 214 TGTTTCCGGCTCTACGTGAGTTTGTTAAGATGGGGAAACCTGTTTGGGGGACATGCGCGG 273
Query 394 GTCTTATATTCTTGGCAGACAGAGCAGTTGGTCAGAAAGAGGGAGGTCAGGAATTAGTTG 453
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 274 GTCTTATATTCTTGGCAGACAGAGCGGTTGGTCAGAAAGAGGGAGGTCAAGAGTTAGTTG 333
Query 454 GTGGCCTTGATTGCACCGTACATAGGAACTTCTTCGGTAGCCAGATTCAAAGTTTTGAAG 513
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 334 GTGGCCTTGATTGCACTGTGCATAGGAACTTCTTCGGCAGCCAGATTCAAAGTTTTGAAG 393
Query 514 CTGATATCTTAGTACCTCAACTAACATCTCAAGAAGGTGGGCCAGAGACATACAGGGGAG 573
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 394 CTGATATCTCAGTACCTCAACTAACATCTCAAGAAGGTGGGCCAGAGACATACCGGGGAG 453
Query 574 TGTTCATACGTGCTCCAGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATT 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TGTTCATACGTGCTCCAGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATT 513
Query 634 ATCCCGTCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGGAAG 693
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 514 ATCCCGTCCCGTCAAACAAGGTCTTGTATTCAAGCTCTACCGTACAAATCCAAGAGGAAG 573
Query 694 ATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACTTGTTAGCAACTG 753
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 574 ATGCACTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACTTGTTAGCTACTG 633
Query 754 CTTTTCATCCCGAGCTTACTGCAGACACTCGATGGCACAGTTATTTCATAAAGATGACGA 813
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 634 CTTTTCATCCCGAGCTTACTGCAGACACACGATGGCACAGTTATTTCATAAAGATGACGA 693
Query 814 AAGAGATTGAGCAAGGAGCTTCTTCAAGCAGTAGTAAGACTATTGTATCTGTTGGAGAAA 873
||||||| || || ||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 694 AAGAGATCGAACAGGGAGCTTCTTCAAACAGTAGTAACACTATTGTATCTGGTGGAGAAA 753
Query 874 CAAGTGCTGGTCCCGAGCCAGCTAAGCCTGATCTTCCTATATTTCAATAACTGAACAGAG 933
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CAAGTGCCGGTCCCGAGCCAGCTAAGCCTGATCTTCCTATATTTCAATAACTGAACAGAG 813
Query 934 AGAAGATACACACTTCTTAAAATAAAAACCAGAGAAAGTGTCAGATTCTTTATCTTTCTA 993
|| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 814 AGTAGAGACACACTTCTTAAAATAAAAACTATAGAAAGTGTCAGATTCTTTATCTTTCTT 873
Query 994 A-AGATGTTTT-GGAAAAATTGCAAGCTAGTTTGCAATTTGCACTCAAGAAAGTTTCACA 1051
| | ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 874 ACA-ATGTTTTTGGAAAAATTTCAAGCTAGTTTGCAATTTGCACACAAGAAAGTTTCACA 932
Query 1052 AGACTCTTTAATGGATTCATGTAC--TTGTTTCTTGATACAACTTTATATATACAGTTGA 1109
|||||||||||||||||||||||| ||||||||| |||||||||| | ||||| |||||
Sbjct 933 AGACTCTTTAATGGATTCATGTACACTTGTTTCTTAATACAACTTT-TGTATACCGTTGA 991
Query 1110 ATCTCAAAC 1118
|||||||||
Sbjct 992 ATCTCAAAC 1000
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 65 AAAAGGCTTTTGTGAGTGTCCCAATTCCATTCACAA 100
||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGGCTTTTGTGAGTGTCCCAATTCCATTCACAA 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5