BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60548.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950803 jgi|Araly1|950803|scaffold_802690.1 2215 0.0
Ahg937188 jgi|Araly1|937188|scaffold_501379.1 1133 0.0
> Ahg950803 jgi|Araly1|950803|scaffold_802690.1
Length=1319
Score = 2215 bits (1199), Expect = 0.0
Identities = 1280/1320 (97%), Gaps = 1/1320 (0%)
Strand=Plus/Plus
Query 472 tttatttttGAGAAGGAGATCATGTTTCGTGATAGTTTTTTGTTTGCCCGTACCATCGGT 531
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTT-TTTTTGAGAAGTAGATCATGTTTCGTGATAGTTTTTTGTTTGCCCGTACCATGGGT 59
Query 532 TGCTTTGGATGCTTTGGCAGTTCTGGTAGTAGAAACCAACAATCGCCTAAGCCCTACGAT 591
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 60 TGCTTTGGATGCTTTGGCACTTCTGGTAGTAGAACCCGACAATCGCCTAAGCCCTACGAT 119
Query 592 GATGATACACATTCCTGTGATAGTGATGTAACTAGCACTGCaagaggagaagaagaagaa 651
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 120 GATGATACATATTCCTGTGATAGTGATGTAACTAGCACCGCGAGAGGAGAAGAAGAAGAA 179
Query 652 gatgaagaagaagtagagcagaagagCCGCTCTAAACGATCTGAGGAAATTTTGAAATAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATGAAGAAGAAGTAGAGCAGAAGAGCCGCTCTAAACGATCTGAGGAAATTTTGAAATAT 239
Query 712 AGATTAGATAATGGATTAATCTGCAGACACATTCCAGTGAGAGAAACTAATGAACTTATA 771
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AGATTAGATAATGGATTAATCTGCAGGCACATTCCAGTGAGAGAAACTAATGAACTTATA 299
Query 772 CGTGGAGAGGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATT 831
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 300 CGTGGAGAGGATGAAAATGGTGACAAGACTATCAATGAGTATGTTCGCGTATGTAAAATT 359
Query 832 GGATCCGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACTTTAGACGGCCAGTATTAT 891
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 GGAGCTGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACGTTAGACGGCCAGTATTAT 419
Query 892 GCTATCAAGGCATTTCACAAGTCGCATTTATTAAGGCTAAGGGTGGCACCGTCAGAGACT 951
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 420 GCTATCAAGGCATTTCACAAGTCACATTTATTAAGGCTAAGGGTTGCACCTTCAGAGACT 479
Query 952 GCTATGAGTGATGTTCTTCGTGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACATC 1011
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTATGAGTGATGTTCTTCGAGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACATC 539
Query 1012 GTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTTGAA 1071
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 GTGAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTCGAA 599
Query 1072 TACGTTGATGGAAAATGGGTGTATGACGGTTCTGGACCGCCGGGTGCTCTCGGAGAGAAA 1131
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 TACGTTGATGGGAAATGGGTGTATGACGGTTCTGGACCGCCAGGTGCTCTCGGAGAGAAA 659
Query 1132 ACTGCTAGAAAGTATTTGCGGGATATTGTTACTGGACTGATGTATCTTCATGCTCATGAT 1191
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 660 ACTGCTAGAAAGTATTTGCGGGATATAGTTACTGGCCTGATGTATCTTCATGCTCATGAT 719
Query 1192 GTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGAAG 1251
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTAATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGAAG 779
Query 1252 ATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGGATGATGACGATCAGCTGCGCCGATCT 1311
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 780 ATAGGAGATTTCAGTGTCAGCCAAGTATTCAAGGATGATGATGATCAACTGCGTCGATCT 839
Query 1312 CCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATAGT 1371
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCCGGGACTCCAGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATAGT 899
Query 1372 GGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGACAA 1431
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 GGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACTTTGTATTGTATGATATTGGGACAA 959
Query 1432 TACCCGTTTCTTGCGGATACTCTTCAGGACACCTACGACAAGATTGTTAACAACCCTCTG 1491
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 TACCCGTTTCTTGCGGATACTCTTCAGGACACGTACGACAAGATTGTTAACAACCCTCTG 1019
Query 1492 ATAATCCCGGATGGATTGAATCCTCTTCTCAGAGATTTGATCGAAGGTCTCCTTTGCAAA 1551
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 ATAATCCCGGATGGACTGAATCCTCTTCTTAGAGATTTGATCGAAGGTCTCCTTTGCAAA 1079
Query 1552 GATCCGAGCCAGAGAATGACACTGAAGAATGTGTCGGAGCATCCATGGGTCATTGGAGAA 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GATCCGAGCCAGAGAATGACACTGAAGAATGTGTCGGAGCATCCATGGGTCATTGGAGAA 1139
Query 1612 GACGGGCATGTCCCGGAGTATTTTTGTTGGTGCAAACGCAATGCTGCCTCAAAGATTGAA 1671
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GACGGGCACGTCCCTGAGTATTTTTGTTGGTGCAAACGCAATGCTGCCTCAAAGATTGAA 1199
Query 1672 GAAGGAGAAGCTAATGGGATCTCTGAAACCTCAGATCCTAACTaaaaaaaCTTTGATGCT 1731
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 GAAGAAGAAGCTAATGGGATCTCTGAAACCTCAGATCCTAACTAAAAAAACTCGGATGCT 1259
Query 1732 TTTGATCGTTTTAAGAAATGTACAAGCTTTGAAGAATAGATGCATCTACTTAACCGTACA 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTGATCGTTTTAAGAAATGTACAAGCTTTGAAGAATAGATGCATCTACTTAACCGTACA 1319
> Ahg937188 jgi|Araly1|937188|scaffold_501379.1
Length=1243
Score = 1133 bits (613), Expect = 0.0
Identities = 1005/1193 (84%), Gaps = 31/1193 (3%)
Strand=Plus/Plus
Query 475 atttttGAGAAGGAGATCATGTTTCGTGATAGTTTTTTGTTTGCCCGTA-CCATCG-GTT 532
||||||| | || |||| |||||||| |||||||||| |||| || | | || | |||
Sbjct 5 ATTTTTG-G-AGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCC-AAGCGAT-GAGTT 60
Query 533 GCTTTGGATGCTTTGGCAGTTCTGGTAGTAGAAACCA-ACAATCGCCTAAGCCCTACGAT 591
|||| || || ||||| | ||| | || || | | | ||| || || || || || |||
Sbjct 61 GCTTCGGTTGTTTTGGTGGCTCT-G-AG-AG-ATCAAGACAGTCACCAAATCCATATGAT 116
Query 592 GATGATACACATTCCTGTGATAGTGATGTAACTAGCACTGCaagaggagaagaagaagaa 651
||||||||| ||||| |||| |||||||||| |||| || ||||||| || ||||||
Sbjct 117 GATGATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAGAA 176
Query 652 gatgaagaagaagtagagcagaagagCCGCTCTAAACGATCTGAGGAAATTTTGAAATAT 711
|| ||||| ||||||||| || ||||||| || || |||||||||||||||||||||| |
Sbjct 177 GAAGAAGAGGAAGTAGAGGAGCAGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAATCT 236
Query 712 AGATTAGATAATGGATTAATCTGCAGACACATTCCAGTG-AGAGAAACTAATGAACTTAT 770
| |||| | |||||| |||||||||| || |||||||| || ||||||||| |||||||
Sbjct 237 AAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAG-GAAACTAATAAACTTAT 295
Query 771 ACGTGGAGAGGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAAT 830
|||||||||||||||| |||| | |||||||| ||||||| |||||| | | |||||||
Sbjct 296 ACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAAT 355
Query 831 TGGATCCGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACTTTAGACGGCCAGTATTA 890
|||||| ||||| ||||| ||||||||| |||||||||||||| | || | | || ||||
Sbjct 356 TGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCATTA 415
Query 891 TGCTATCAAGGCATTTCACAAGTCGCATTTATTAAGGCTAAGGGTGGCACCGTCAGAGAC 950
|||||| ||||| ||||||||||| ||||||||| |||| |||| ||||| ||||| ||
Sbjct 416 TGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAAAC 475
Query 951 TGCTATGAGTGATGTTCTTCGTGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACAT 1010
||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 476 TGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAATAT 535
Query 1011 CGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTTGA 1070
|||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 536 CGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTCGA 595
Query 1071 ATACGTTGATGGAAAATGGGTGTATGACGGTTCTGGACCGCCGGGTGCTCTCGGAGAGAA 1130
||| |||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||
Sbjct 596 ATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGA-AA 654
Query 1131 A-ACTGCTAGAAAGTATTTGCGGGATATTGTTACTGGACTGATGTATCTTCATGCTCATG 1189
| |||||||||||| ||||| ||| | |||||||| || ||||| || |||||||||
Sbjct 655 CTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCATA 714
Query 1190 ATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGA 1249
|||| ||||| |||||||| ||||| |||||||||||||||||||||| ||| | |||||
Sbjct 715 ATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTGA 774
Query 1250 AGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGGATGATGACGATCAGCTGCGCCGAT 1309
| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||
Sbjct 775 AAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGAT 834
Query 1310 CTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATA 1369
||||||| ||||||||||| ||||| |||||||||||||||| | |||||| || |
Sbjct 835 CTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAG-----G-TATAACATACA 888
Query 1370 GTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGAC 1429
|||| ||| |||| || || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 889 GTGGAAGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGAC 948
Query 1430 AATACCCGTTTCTTGCG-GATACTCTTCAGGACACCTACGACAAGATTGTTAACAACCC- 1487
||||||||||||| | | ||||| ||||| || || || |||||||||||| |||||||
Sbjct 949 AATACCCGTTTCTGG-GTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCG 1007
Query 1488 TCTGATAATCCCGGATGGATTGAATCCTCTTCTCAGAGATTTGATCGAAGGTCTCCTTTG 1547
| |||||||||| |||||| ||||||||| |||||| || ||||||||||||||||||||
Sbjct 1008 T-TGATAATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTG 1066
Query 1548 CAAAGATCCGAGCCAGAGAATGACACTGAA-GAATGTGTCGGAGCATCCATGGGTCATTG 1606
||||||||| | |||||| ||||| |||| | |||| |||||||||||||||||| |
Sbjct 1067 CAAAGATCCAAACCAGAGGATGACGTTGAAAGC-TGTGGCGGAGCATCCATGGGTCACAG 1125
Query 1607 GAGAAGACGGG-C-ATGTCCCGGAGTATTTTTGTTGGTGCAAACGCAATGCTG 1657
||||||||||| | || || | | ||||||||||||||||||||||| ||||
Sbjct 1126 GAGAAGACGGGGCTATTTCA-GAA-TATTTTTGTTGGTGCAAACGCAAAGCTG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5