BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60553.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950804 jgi|Araly1|950804|scaffold_802691.1 272 7e-73
> Ahg950804 jgi|Araly1|950804|scaffold_802691.1
Length=282
Score = 272 bits (147), Expect = 7e-73
Identities = 212/243 (87%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 1 ATGTCGTCGAAAATTAAATTTGTAGCTCTTCTCATCGTAGTAATTTCTCTCCTTCTTAAC 60
|||||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 21 ATGTCGTCAAAAATGAAATTTGCGGCTCTTCTCATCGTTGTAATTTCTCTCCTTGTTAAC 80
Query 61 AATGCGCAATCCACTCGAGAGAT---CCTCTCCGCGGAAATTTGTGGATGGAATGACCCT 117
|||| | |||||||||||||||| |||||||| |||||||||||||| |||| |||
Sbjct 81 AATGTGAAATCCACTCGAGAGATAAACCTCTCCGGGGAAATTTGTGGATTCTATGAACCT 140
Query 118 GCTGTACATTGTAAGACAAAAGAAGATTGTTTTGAGAAATGTGGAGGCAGACCTGCTAAG 177
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 141 GCTGTATTTTGTAAGAGAAAAGAAGATTGTTTTGAGAAATGTGGAGGCAGGCCTTCTAAT 200
Query 178 AAAGTTTTTTGTGTGCGTCCAGGAGACCATAGCTATGATCGTCTGTGTTGTTGTCGCGCT 237
|||||||| |||||||| ||||| | || ||| ||||||| |||||||||||||||||
Sbjct 201 AAAGTTTTCTGTGTGCGAACAGGA--C-ATGGCTTTGATCGTGTGTGTTGTTGTCGCGCT 257
Query 238 TAA 240
|||
Sbjct 258 TAA 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5