BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60560.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772 387 1e-106
Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001 372 4e-102
Ahg929886 jgi|Araly1|929886|scaffold_302343.1 329 2e-89
Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1 182 6e-45
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 71.3 1e-11
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 69.4 5e-11
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 67.6 2e-10
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 67.6 2e-10
Ahg929516 jgi|Araly1|929516|scaffold_301973.1 63.9 2e-09
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 62.1 9e-09
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 62.1 9e-09
Ahg929518 jgi|Araly1|929518|scaffold_301975.1 56.5 4e-07
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 52.8 5e-06
> Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772
Length=1146
Score = 387 bits (209), Expect = 1e-106
Identities = 327/383 (85%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 16 GATCTTTCGGAGG-ATTTGGTAGAGG-AGATATTGTGTAGGGTTTCGATAACTTCTCTAG 73
|||| ||| ||| ||||||||| || ||||||||| || |||| ||||||||| ||| |
Sbjct 16 GATC-TTCCAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTTCCGATAACTTGTCTTG 73
Query 74 GAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTA 133
|||| ||||||| ||| |||||||||||| | | |||||||||| | || |||||||||
Sbjct 74 GAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAAGTTCGGATTCTATGTA 133
Query 134 AAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTGCTCAA 193
|||| ||||||| |||||||||| | |||||||||| |||||| ||||||||||| |||
Sbjct 134 AAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAGTATAAGCTTTGTTCAG 193
Query 194 TGAG-G-TTTG----ATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAA-GAATTCATG 246
|||| | |||| |||| ||||||| ||||||||||||||||| | || |||||| ||
Sbjct 194 TGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAAGAAGGAGCT-AACGAATTCGTG 252
Query 247 AATCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTT 306
||||||| |||||| ||| |||||||||| || ||||| | | |||| || |||||||
Sbjct 253 TATCCATCTATAAAGGAGTTAGGTAATTTATTTAATCAAGTCAAGATATCTAGAGTTTTT 312
Query 307 CAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGG 366
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 313 CAATGCGACGGGTTATTGTTATGCATGACCAAAGAGGACAACACTAGGCTCGTGGTATGG 372
Query 367 AACCCTTATTCGGGTCAAATCAG 389
|||||||||| ||||||||||||
Sbjct 373 AACCCTTATTTGGGTCAAATCAG 395
Score = 215 bits (116), Expect = 6e-55
Identities = 174/200 (87%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 848 CCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGTTTT 906
||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 755 CCAATGCAGTGTCGTGGAAT-CCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTT 813
Query 907 CGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCC 966
|||||| ||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 814 GGTTTTCATTTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873
Query 967 GTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGTAGCT 1026
|| ||||||||| |||| ||| | |||||||||| |||||||||||||| ||||
Sbjct 874 GTTGTTATTCATTTTGA------CGC--A-TCTGAAATGACCCGCTACGAGGACGCAGCT 924
Query 1027 TACATCATTGGAGAGAATGG 1046
|||||||||||| |||||||
Sbjct 925 TACATCATTGGAAAGAATGG 944
> Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001
Length=1068
Score = 372 bits (201), Expect = 4e-102
Identities = 323/381 (85%), Gaps = 11/381 (3%)
Strand=Plus/Plus
Query 16 GATCTTTCGGAGG-ATTTGGTAGAGG-AGATATTGTGTAGGGTTTCGATAACTTCTCTAG 73
|||| ||| ||| ||||||||| || ||||||||| || |||| ||||||||| ||| |
Sbjct 16 GATC-TTCCAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTTCCGATAACTTGTCTTG 73
Query 74 GAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTA 133
|||| ||||||| ||| |||||||||||| | | |||||||||| | || |||||||||
Sbjct 74 GAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAAGTTCGGATTCTATGTA 133
Query 134 AAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTG--CTC 191
|||| ||||||| |||||||||| | |||||||||| |||||| ||||||||||| | |
Sbjct 134 AAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAGTATAAGCTTTGTTCAC 193
Query 192 -AA-TGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAA-GAATTCATGAA 248
|| | ||| |||| ||||||| ||||||||||||||||| | || |||||| || |
Sbjct 194 AAACT-TTGTTCAATCTTCATGGAACCTTCAACGAAGAAGGAGCT-AACGAATTCGTGTA 251
Query 249 TCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTTCA 308
|||||| |||||| ||| |||||||||| || ||||| | | |||| || |||||||||
Sbjct 252 TCCATCTATAAAGGAGTTAGGTAATTTATTTAATCAAGTCAAGATATCTAGAGTTTTTCA 311
Query 309 ATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGGAA 368
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 312 ATGCGACGGGTTATTGTTATGCATGACCAAAGAGGACAACACTAGGCTCGTGGTATGGAA 371
Query 369 CCCTTATTCGGGTCAAATCAG 389
|||||||| ||||||||||||
Sbjct 372 CCCTTATTTGGGTCAAATCAG 392
Score = 217 bits (117), Expect = 2e-55
Identities = 177/204 (87%), Gaps = 11/204 (5%)
Strand=Plus/Plus
Query 844 GAGGCCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAG 902
||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 751 GAGCCCAATGCAGTGTCGTGGAAT-CCTTTTTTAAAAGTTGATATGAAACCACATTGTAG 809
Query 903 TTTTCGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 962
|||| |||||| ||| | || ||||||||||||||||||||||||||||||| |||||||
Sbjct 810 TTTTGGTTTTCATTTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGT 869
Query 963 CGCCGTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGT 1022
|| || ||||||||| |||| ||| | |||||||||| ||||||||||||||
Sbjct 870 CGGTGTTGTTATTCATTTTGA------CGC--A-TCTGAAATGACCCGCTACGAGGACGC 920
Query 1023 AGCTTACATCATTGGAGAGAATGG 1046
|||||||||||||||| |||||||
Sbjct 921 AGCTTACATCATTGGAAAGAATGG 944
> Ahg929886 jgi|Araly1|929886|scaffold_302343.1
Length=742
Score = 329 bits (178), Expect = 2e-89
Identities = 321/387 (83%), Gaps = 22/387 (6%)
Strand=Plus/Plus
Query 670 TATTTACTCTGTTTTGATTTTACAACGGAGAACTTTGGTCAGCTTCATCCTTTACCGTTT 729
||||||||||||||||||||||| |||||| |||||| ||| ||| |||| | ||||||
Sbjct 136 TATTTACTCTGTTTTGATTTTACGGCGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTT 195
Query 730 GAGCA--AT-AT-ATTGACGACGCTGGAGCTCTCTCTTCTTTTGGAGAGGAGAAACTCGC 785
|||| || || ||| ||| |||||||||||| ||||| |||| || |||||||||||
Sbjct 196 CAGCACCATGATGATT-TCGATGCTGGAGCTCTCGCTTCTCTTGGGGACGAGAAACTCGC 254
Query 786 GGCGTTATTTCAGAGCTTCGCTAGTTCAGTTGTGGAGA-TTTGGGTTACAAGTATGATTG 844
||||||| ||||||| | ||| ||| ||||| | |||||||||| ||||||||||
Sbjct 255 CGCGTTATATCAGAGCGAGGATAGAACAGAGGTGGA-ACTTTGGGTTACTAGTATGATTG 313
Query 845 AGGCCAATGCAGTGTCGTGGAT-CCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGT 903
|| ||||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||
Sbjct 314 AGCCCAATGCAGTGTCGTGG-TACCCTTTCTTAAAAGTTGACATGGAACCACACTACGGT 372
Query 904 TTTCGTTTT-CGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 962
| || |||| |||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 373 TCTCATTTTATGTTT-CACTTTTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 431
Query 963 CGCCGTGGTTATTCA-TGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACG 1021
||||||||||||||| | |||| || |||||||| || |||| |||||||||
Sbjct 432 CGCCGTGGTTATTCACT-TTGA------CG---AATCTGAAGCGACCCGCCACGAGGACG 481
Query 1022 TAGCTTACATCATTGGAGAGAATGGCT 1048
||||||||||||||| || |||||||
Sbjct 482 CAGCTTACATCATTGGTGATAATGGCT 508
> Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1
Length=933
Score = 182 bits (98), Expect = 6e-45
Identities = 367/492 (75%), Gaps = 38/492 (8%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGC-GATCTTTCGGAGGATTTGGTAGAGGAGATATTGTGT-AGGGTTT 58
|||||||||||| | |||||||| |||||||||||||||||||| | | | ||| | |
Sbjct 1 ATGACGATGATG-TCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59
Query 59 CGATAACTTCTCTAGGAGCAGTGAGATCCACGT-GCAAAGGATGGTATGTTTTATCCAAA 117
|||||||||||||||||||||||||||||| | ||||| |||| | | | |||||||
Sbjct 60 -GATAACTTCTCTAGGAGCAGTGAGATCCAC-TCGCAAACAATGGAACGCCTCATCCAAA 117
Query 118 -ACTAGGGT-TCTATGTAAAGCAGAAACAAAGCATCAGTTTCT-AGGGTTCATGAAGAAG 174
|| || | | | |||||||||||| ||| | | |||||||| ||| |||||| || |
Sbjct 118 GACC-GGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATG 174
Query 175 AATTATAAGCTTTGCT--CAATGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAG 232
|| ||| | ||| || |||||| || ||||||| |||| | |||| | ||| ||
Sbjct 175 GATCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGG-- 230
Query 233 GTGAAGAATTCATGAATCCATCAATAAAGAAG-TCAGGTAATTTACTTGATCAACTTGAT 291
||||| || | |||||| || ||| || | |||| || || || ||||| | ||
Sbjct 231 -TGAAGTCTTTGTTCGTCCATCTATCAAGGAGGT-AGGTGATATAGTTAATCAAATCGAC 288
Query 292 ATATGTAAAGTTTTTCAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACT 351
|| | |||||| ||||| ||||| || ||| |||| ||||| || ||| | | ||| |
Sbjct 289 ATCTCTAAAGTGTTTCATTGCGATGGTTTAGTGTTGTGCGTCAC-AAAT-G-ACAACTCA 345
Query 352 AGGCTCGTGGTATGGAACCCTTATTCGGGTCAAATCAGGTGGATC-AAATGCAATA-A-C 408
|| |||||||| ||||| || |||| |||||||| || ||||||| ||| ||| | | |
Sbjct 346 AGTCTCGTGGTTTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAA--CAAGAGAAC 403
Query 409 TCTTACCACAGA-T-ACGA-AGGTTATGCTATCGGATACAACAATAACC-GTAAACACAA 464
|| || || || | | || | ||| |||| | |||||| |||| || | || |||||
Sbjct 404 -CTCACGAC-GAATCA-GACATGTT-TGCTCTAGGATACGACAAGGACAAG-AACCACAA 458
Query 465 AATCTTGAGGTT 476
|||||||||||
Sbjct 459 GATCTTGAGGTT 470
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 71.3 bits (38), Expect = 1e-11
Identities = 228/315 (72%), Gaps = 31/315 (10%)
Strand=Plus/Plus
Query 672 TTTACTCTGTTTTGATTTTACAACGGAGAACTTTGGTCAGCTTCATCCTT-TACCGTTTG 730
||| |||||||| |||| |||||| |||| |||||||| || || | ||| ||||||||
Sbjct 744 TTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTC-TACTTCTACCGTTT- 801
Query 731 AGCAAT-ATATTGACGACG-CTG-GAGCTCTCTCTTCTTTTGGAGAGGAGAAACTCGCGG 787
| | | || |||| || | | | | ||| | || | | ||||| | ||| |||||
Sbjct 802 AACCCTCATGTTGAAGA-GACCGTG-GCTTTATCATGTGTTGGAAAAGAGCGGCTCGCTA 859
Query 788 CGTTATTTCAGAGCTTCGCTAG---T-TCAGTTG-TGGAGATTTGGGTTACAAG-TATGA 841
| ||| ||| ||| || | || | | ||| | | ||||| ||||| || || || ||
Sbjct 860 TGCTATATCAAAGC-TC-CAAGACATCTGAGTCGATAGAGATATGGGTAAC-AGATAAGA 916
Query 842 TTGAGGCC-AATGCAGTGTCGTGGATC-CCTTTCTTAAAAGTTGATATGAAACCA--CAC 897
|||| || || || |||||||||| | |||| | ||||| ||||| | |||| |||
Sbjct 917 TTGA-TCCAAAAGCGGTGTCGTGGAGCAAGTTTC-TGAAAGTGGATATCACACCACTCAC 974
Query 898 TGTAGTTTTCGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAG 957
|| |||||| || ||| | ||| ||| || ||||||||||||||||||||||||
Sbjct 975 TG--GTTTTC-----CGGTTGACATTT-ACGCTGATAGTTTCTTCATTGACGAGGAGAAG 1026
Query 958 AAAGTCGCCGTGGTT 972
||||| || | ||||
Sbjct 1027 AAAGTTGCTGCGGTT 1041
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 69.4 bits (37), Expect = 5e-11
Identities = 48/53 (91%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 928 GGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGT-GGTTATTCATG 979
||||| ||||||||||||||||||||||||||||||||| | |||| || |||
Sbjct 834 GGTGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTT-TTGATG 885
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 934 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
|||||||||||||||||||||||||||||||| ||||||
Sbjct 1010 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1048
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 934 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
|||||||||||||||||||||||||||||||| ||||||
Sbjct 922 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 960
> Ahg929516 jgi|Araly1|929516|scaffold_301973.1
Length=1193
Score = 63.9 bits (34), Expect = 2e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 930 TGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
||| |||||||| |||||||||||||||||||||||||||||
Sbjct 977 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCGTGGTT 1019
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 62.1 bits (33), Expect = 9e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 934 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
||||||||||||||||||||||||||||| || ||||||
Sbjct 976 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTT 1014
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 62.1 bits (33), Expect = 9e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 934 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
||||||||||||||||||||||||||||| || ||||||
Sbjct 1372 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTT 1410
> Ahg929518 jgi|Araly1|929518|scaffold_301975.1
Length=1297
Score = 56.5 bits (30), Expect = 4e-07
Identities = 35/37 (95%), Gaps = 2/37 (5%)
Strand=Plus/Plus
Query 672 TTTACTCTGTTTTGATTTTACAACGGAGA-ACTTTGG 707
||||||||||||||||||||||||||||| | |||||
Sbjct 827 TTTACTCTGTTTTGATTTTACAACGGAGAGA-TTTGG 862
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 937 TTCTTCATTGACGAGGAGAAGAAAGTCG 964
||||||||||||||||||||||||||||
Sbjct 992 TTCTTCATTGACGAGGAGAAGAAAGTCG 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5