BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60570.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496203 jgi|Araly1|496203|fgenesh2_kg.8__2019__AT5G60570.1 1748 0.0
> Ahg496203 jgi|Araly1|496203|fgenesh2_kg.8__2019__AT5G60570.1
Length=1210
Score = 1748 bits (946), Expect = 0.0
Identities = 1067/1126 (95%), Gaps = 5/1126 (0%)
Strand=Plus/Plus
Query 502 tctgcttctgcttctgTAGTTGTGAATTTGAGGGTAGGAGAGGAGGATAACGATGGTCAT 561
||||||||||||||||||| |||||||| | |||||||||||| | ||||||||||||
Sbjct 40 TCTGCTTCTGCTTCTGTAGCTGTGAATTCAATGGTAGGAGAGGA-G--AACGATGGTCAT 96
Query 562 CGCCTCAGGTTGGGATCTAGTGACTCAG-TTCTCCCTGGTCTTATCGATGACGTTGCTCT 620
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 97 CGCCTCAGGTTGGGATCTACTGACTC-GCTTCTCCCTGGTCTTATCGATGACGTTGCTCT 155
Query 621 TAACTGTCTTGCTTGGGTTCCAAGGTCAGATTATCCTTCCTTGTCATGTGTAAACAAGAA 680
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 156 TAATTGTCTTGCTTGGGTTCCGAGGTCAGATTATCCTTCCTTGTCATGTGTCAACAAGAA 215
Query 681 GTACAATAAGTTGATCAACAGTGGTCATTTGTTTGCTTTGAGAAAGGAATTGGGGATAGT 740
||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||
Sbjct 216 GTACAATAAGTTGATCAACGGTGGTCATTTGTTTGCTCTGAGAAAACAATTGGGGGTAGT 275
Query 741 GGAGTATCTTGTTTTCATGGTTTGTGATCCGAGAGGTTGGTTGATGTTTTCTCCTATGAA 800
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 276 GGAGTATCTTGTTTTCATGGTTTGTGACCCGAGAGGTTGGTTGATGTTTTCTCCTATGAA 335
Query 801 AAAGAAATGGATGGTGTTACCTAAAATGCCCTGTGACGAGTGCTTCAACCACGCGGATAA 860
|||||| ||||||||||||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct 336 AAAGAAGTGGATGGTGTTACCTAAAATGCCATGTGACGACTGCTTCAACCTCGCCGATAA 395
Query 861 AGAGTCTTTGGCTGTAGATGACGAGCTTTTGGTCTTCGGGAGAGAGTTGTTTCAGTTTGC 920
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 396 AGAGTCTTTGGCTGTAGATGACGAGCTTTTGGTTTTCGGGAGAGAGTTGTTTCAGTTTGT 455
Query 921 GATTTGGAAATACAGTTTGAGGTCTCGGTGTTGGGTCAAATGCGAAGGAATGCATCGTCC 980
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 456 GATTTGGAAATACAGTTTGAGGTCTCGGTGTTGGGTCAAATGTGAAGGAATGCATCGTCC 515
Query 981 TCGCTGCTTGTTTGCATCGGGAAGCCTCGGTGGGATTGCTATAGTTGCGGGAGGAACTGA 1040
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 516 TCGCTGCTTGTTTGCATCCGGAAGCCTCGGTGGAATTGCTATAGTTGCGGGAGGGACTGA 575
Query 1041 TATGAATGGGAATATACTAGCATCAGCTGAGCTTTATGATTCTTCGTCAGGGAGATGGGA 1100
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TATGAATGGGAATATATTAGCATCAGCTGAGCTTTATGATTCTTCGTCAGGGAGATGGGA 635
Query 1101 GATGCTTCCCAATATGCATTCACCTCGAAGACTATGCTCGGGTTTTTTCATGGATGGTAA 1160
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 636 AATGCTTCCCAATATGCATTCCCCTCGAAGACTATGCTCGGGGTTTTTCATGGACGGGAA 695
Query 1161 GTTTTATGTGATTGGAGGCATGTCGAGCCCTAATGTATCAGTCACTTTTGGAGAGGAGTT 1220
|| |||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 696 ATTCTATGTGATTGGAGGCATGTCGAGCCCGAATGTATCGGTTACTTTTGGGGAGGAATT 755
Query 1221 TGATCTTGAGACAAGGAAATGGAGGAAGATAGAAGGAATGTATCCGAATGTGAACCGAGC 1280
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 756 TGATCTGGAAACAAGGAAGTGGAGGAAGATAGAAGGAATGTATCCAAATGTGAACCGAGC 815
Query 1281 AGCACAGGCTCCACCACTTGTTGTAGTGGTTAACAACGAGCTATTCACGCTTGAGTACTC 1340
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 816 AGCACAGGCTCCACCTCTTGTTGTAGTGGTTAACAACGAGCTATTCACGCTCGAGTACTC 875
Query 1341 AACCAATATGGTTAAGAAGTATGATAAGGTGAAGAACAAATGGGAAGTGATGGGAAGGTT 1400
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 AACCAATATGGTGAAGAAGTATGATAAGGTGAAGAACAAATGGGAAGTGATGGGAAGGTT 935
Query 1401 ACCGCCGATGGTGGACTCGTCAAACGGTTGGGGACTGGCGTTTAAACCGTGCGGGGATCA 1460
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 936 ACCGCCGATGGTGGACTCATCAAACGGTTGGGGATTGGCGTTTAAACCGTGCGGGGACCA 995
Query 1461 ATTGTTGGTGTTTTGTGGGCAACGAGGTCCTCATGGCGAGGGCATTGTGGTGAATTCTTG 1520
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 996 ATTGTTGGTGTTTTGTGGGCAACGAGGTCCTCACGGTGAGGGCATAGTGGTGAATTCTTG 1055
Query 1521 GTGTCCGAAATCGGGAGCTAAAGATGGAAACTTGGATTGGAAAGTGCTTGGAGTTAAAGA 1580
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GTGTCCGAAATCAGGAGCTAAAGATGGAAACTTGGATTGGAAAGTGCTTGGAGTTAAAGA 1115
Query 1581 GAATGTTGGTGTGTTTGTGTATAACTGCGCAGTGATGGGTTGCTAA 1626
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1116 AAATGTTGGTGTGTTTGTGTATAACTGCGCAGTGATGGGTTGTTAA 1161
Score = 86.1 bits (46), Expect = 9e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1651 TCTTCTTCTTCTCTATTGACTGGTCTTTTGTTTTTGCTATTGGGATTAT 1699
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCTTCTTCTTTTCTATTGACTGGTCTTTTGTTTTTGCTATTGGGATTAT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5