BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60590.2
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358267 jgi|Araly1|358267|fgenesh1_pg.C_scaffold_8002054 1356 0.0
Ahg482017 jgi|Araly1|482017|fgenesh2_kg.4__1077__AT5G60590.2 1003 0.0
> Ahg358267 jgi|Araly1|358267|fgenesh1_pg.C_scaffold_8002054
Length=855
Score = 1356 bits (734), Expect = 0.0
Identities = 807/843 (96%), Gaps = 2/843 (0%)
Strand=Plus/Plus
Query 42 ATGAATCTCTCCACGAGGCTCGCTGAAAAACTTCCCGGAATCTTACCGGCGCCGTCTTCT 101
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAATCTCTCCACGAGGCTCGCTGAGAAACTTCCTGGAATCTTACCGGCGCCGTCTTCT 60
Query 102 CCTCTCCTGCGTAAAGGAGTCTCCGAGTTAAGATGCTTTTCAATTGCTAACCAAAGTAGA 161
||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CCTCTTCTACGTAAAGGAATCTCCGAGTTAAGATGCTTTTCAATTGCTAACCACAGTAGA 120
Query 162 AGATTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACCTGT 221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACCTGT 180
Query 222 GTAGTGAGCAAATCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCTATT 281
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGTTAGCAATTCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCTATT 240
Query 282 GAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCT 341
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCTATCAAATCCGAGAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCT 300
Query 342 TGTGATGCTTGTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCGTAAACTT 401
||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 301 TGTGATGCTTGTTCTTTAGAAGCAGTTAACCGGATATATGAGATCAAAGGGCGTAAACTT 360
Query 402 ACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATCAAGAGAGTGGCTACCAC- 460
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 361 ACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATTAAGAGAGTTGCTACAACT 420
Query 461 AAGTCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTCTTGTACT 520
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 AA-CCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTATTGTACT 479
Query 521 TCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCAGGGATTGGTACTATTGG 580
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCTGGGATTGGTACTATTGG 539
Query 581 AGTACGGGTTCCAGATTGTGAATTCATTAGAGAAGTATCGAGAGGTTCGGGCAGTGTGTT 640
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 AGTACGGGTTCCAGATTGCGAATTCATTAGAGAAGTATCGAGAGGTTCGGGAAGTGTGTT 599
Query 641 GGCTCTTACAAGTGCTAATTTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTTTGA 700
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGCTCTTACAAGTGCTAACCTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTTTGA 659
Query 701 GAATCTTTGGCAGCATTGTGCTTATGTCTATGATGGTGGTTTACTTCCATCGGGCCGCGC 760
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 GAATCTTTGGCAGCATTGTGCTTATGTCTATGATGGTGGTTTGCTTCCATCGGGTCGCGC 719
Query 761 AGGATCTACAATAGTCGATCTGACTAAAGTTGGAAAGTACAAGATCATTAGGCCCGGAAG 820
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 720 TGGATCTACAATTGTCGATCTGACGAAAGTCGGAAAGTATAAGATCATTAGACCCGGAAG 779
Query 821 CGCGAAACAAGCAACAGTGGCAATTCTTGAGAAGTATTTGCTGgaagaagaagaagaaga 880
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 780 CGCGAAGCAAGCAACAGTGGCGATTCTTGAAAAGTATTTGCTGGAAGAAGAAGAAGAAGA 839
Query 881 aga 883
|||
Sbjct 840 AGA 842
> Ahg482017 jgi|Araly1|482017|fgenesh2_kg.4__1077__AT5G60590.2
Length=873
Score = 1003 bits (543), Expect = 0.0
Identities = 632/676 (93%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 39 GCGATGAATCTCTCCACGAGGCTCGCTGAAAAACTTCCCGGAATCTTACCGGCGCCGTCT 98
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 30 GCGATGAATCTTTCCACGAGGCTCGCTGAGAAACTTCCTGGAATCTTACCGGCGCCGTCG 89
Query 99 TCTCCTCTCCTGCGTAAAGGAGTCTCCGAGTTAAGATGCTTTTCAATTGCTAACCAAAGT 158
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 90 TCTCCTATCCTGCGTAAAGGAGTCTCCGAGTTAAGATTCTTTTCAATTGCTAACCATAGT 149
Query 159 AGAAGATTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACC 218
|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||
Sbjct 150 AGAAGATTGAGATGGGGACTACAGAAGAAGATGGTATGGAGTTTGGAGAGAGCTGAAACC 209
Query 219 TGTGTAGTGAGCAAATCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCT 278
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TGTGTAGTTAGCAATTCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCT 269
Query 279 ATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTC 338
|||||||| || |||||||| |||||||| ||||| || |||||||| ||||||||||||
Sbjct 270 ATTGAAGCAATTAAATCCGATAAAGTTATCGCTGTCCCAACCGATACTCTTTATGGCTTC 329
Query 339 GCTTGTGATGCTTGTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCGTAAA 398
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 330 GCTTGTGATGCTTGTTCTTTAGAAGCGGTTAACCGAATATATGAGATCAAAGGGCGTAAA 389
Query 399 CTTACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATCAAGAGAGTGGCTACC 458
||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 390 CTTACAAGCCCTTTAGCCATATGCGTTGGTGATGTATTCGATATCAAGAGAGTTGCTACT 449
Query 459 AC-AAGTCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTCTTGT 517
|| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 450 ACGAA-TCACTTACCTCACGGTTTACTTGATTCTCTCTTGCCCGGTCCAGTCACTCTCGT 508
Query 518 ACTTCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCAGGGATTGGTACTAT 577
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 509 ACTTCATCGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCGGGGATTGGTACTAT 568
Query 578 TGGAGTACGGGTTCCAGATTGTGAATTCATTAGAGAAGTATCGAGAGGTTCGGGCAGTGT 637
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 569 TGGAATACGGGTTCCTGATTGTGAATTCATTAGAGAAGTATTGAGAGGTTCGGGCAGTGT 628
Query 638 GTTGGCTCTTACAAGTGCTAATTTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTT 697
||| |||||||||||||||||| |||| || || |||||||||||||||||||| |||||
Sbjct 629 GTTAGCTCTTACAAGTGCTAATCTAAGTGGGGACAGAAGCAGCGTTTGTGTTAATGATTT 688
Query 698 TGAGAATCTTTGGCAG 713
|||||| |||||||||
Sbjct 689 TGAGAAACTTTGGCAG 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5