BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60615.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496210 jgi|Araly1|496210|fgenesh2_kg.8__2026__AT5G60615.1 377 2e-104
> Ahg496210 jgi|Araly1|496210|fgenesh2_kg.8__2026__AT5G60615.1
Length=240
Score = 377 bits (204), Expect = 2e-104
Identities = 229/241 (95%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCATCAAGATTTCAACTTGTTGCTCTTCTCGTCGTCTTCTCTCTCGTTATTAGT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCTTCATCAAGATTTCAACTTGTTGCTCTTCTCGTCATCTTCTCTCTCGTTATTAGT 60
Query 61 ATTACTG-CAAATTCCGTAGAGAAAGACGTAATGGACGGACCATGCCGCTTAAGAGGAAC 119
||||||| | || |||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATTACTGCCCAA-TCCGCAGAAAAAGAAGTAATGGACGGACCATGCCGCTTAAGAGGAAC 119
Query 120 GTGCAACAACGACGGCGACTGCGACAAGCATTGTCACAGGAGCACCGACGCTGCAGCCAT 179
||||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 120 GTGCAACAACGACAGCGACTGCGACAAACATTGTCACAGGAGCACCGACGCTACACCCAT 179
Query 180 GGACGGCCACTGCCTCTTCGACAAACCCACCGGTCCTGTTTGTTGCTGCTTATTTGATTA 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGACGGTCACTGCCTCTTCGACAAACCCACCGGTCCTGTTTGTTGCTGCTTATTTGATTA 239
Query 240 A 240
|
Sbjct 240 A 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5