BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60620.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950810 jgi|Araly1|950810|scaffold_802697.1 1980 0.0
Ahg939525 jgi|Araly1|939525|scaffold_600069.1 196 3e-49
Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680 196 3e-49
> Ahg950810 jgi|Araly1|950810|scaffold_802697.1
Length=1175
Score = 1980 bits (1072), Expect = 0.0
Identities = 1141/1175 (97%), Gaps = 1/1175 (0%)
Strand=Plus/Plus
Query 47 TCGGAAACCGGCGACGTAAGCTATGAGCAGTACGGCAGGGAGGCTCGTGACTTCAAAATC 106
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 1 TCGGAAACCGGCGACGTAAGCTATGAGCAGTAAGGCAGGGAAGCTGGTGACTTCAAGATC 60
Query 107 CGAGCTTGACCTCGATCACCCTAACATCGAAGATTACCTTCCTTCTGGTTCTTCCATCAA 166
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGCTTGATCTCGATCACCCTAACATCGAAGATTACCTTCCTTCTGGTTCTTCCATCAA 120
Query 167 TGAACCTCGCGGCAAGCTCAGCCTGCGTGATTTGCTAGACATCTCTCCAACGCTCACTGA 226
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CGAGCCTCGCGGCAAGCTCAGCCTGCGTGATTTGCTAGACATCTCCCCAACGCTCACTGA 180
Query 227 AGCTGCTGGTGCCATTGTTGATGACTCGTTCACAAGATGTTTCAAATCAAATCCTCCAGA 286
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AGCTGCTGGTGCCATTGTTGATGACTCGTTCACAAGATGTTTCAAATCGAATCCTCCAGA 240
Query 287 ACCTTGGAACTGGAATATTTACTTATTCCCACTATACTGCTTTGGGGTTGTTGTTAGATA 346
||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 241 ACCTTGGAACTGGAACATTTACTTATTCCCACTTTGGTGCTTTGGTGTTGTTGTTAGATA 300
Query 347 CTGTATCCTCTTTCCCTTGAGGTGCTTCACTTTAGCTTTTGGGTGGATTATTTTCCTTTC 406
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGTATTCTCTTTCCCTTGAGGTGCTTCACTTTAGCTTTTGGGTGGATTATTTTCCTTTC 360
Query 407 ATTGTTTATCCCTGTAAATGCGTTGCTGAAAGGTCAAGATAGGTTGAGGAAAAAGATAGA 466
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGTTTATCCCCGTAAATGCGCTGCTGAAAGGTCAAGATAGGTTGAGGAAAAAGATAGA 420
Query 467 GAGGGTCTTGGTGGAAATGATTTGCAGCTTTTTTGTCGCCTCATGGACCGGAGTTGTCAA 526
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGGTTTTGGTGGAAATGATATGCAGCTTTTTTGTCGCCTCATGGACCGGAGTTGTCAA 480
Query 527 ATATCACGGGCCACGTCCTAGCATCCGTCCTAAGCAGGTCTATGTTGCCAACCATACTTC 586
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATATCACGGTCCACGGCCTAGCATCCGTCCTAAGCAGGTCTATGTTGCCAACCATACTTC 540
Query 587 AATGATTGATTTCATCGTATTGGAGCAGATGACCGCATTTGCTGTTATAATGCAGAAGCA 646
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATGATTGATTTCATCGTCTTGGAGCAGATGACCGCATTTGCTGTTATAATGCAGAAGCA 600
Query 647 TCCTGGTTGGGTTGGTCTTCTGCAAAGCACAATATTAGAGAGTGTGGGATGTATCTGGTT 706
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCCTGGCTGGGTTGGGCTTCTGCAAAGCACAATATTAGAGAGTGTGGGATGTATCTGGTT 660
Query 707 CAATCGTTCAGAGGCAAAGGATCGTGAAATTGTAGCAAAAAAGTTAAGGGACCATGTCCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAATCGTTCAGAGGCAAAGGATCGTGAAATTGTAGCAAAAAAGTTAAGGGACCATGTCCA 720
Query 767 AGGAGCTGACAGTAATCCTCTTCTCATATTTCCCGAAGGGACATGTGTAAATAATAATTA 826
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 AGGAGCTGACAATAATCCTCTTCTCATATTTCCCGAGGGGACATGTGTAAATAATAATTA 780
Query 827 CACAGTGATGTTTAAGAAGGGTGCTTTTGAATTGGACTGCACTGTTTGTCCAATTGCAAT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CACAGTGATGTTTAAGAAGGGTGCTTTTGAATTGGACTGCACTGTTTGTCCAATTGCAAT 840
Query 887 TAAATACAACAAGATTTTTGTTGACGCCTTCTGGAATAGCAGAAAACAATCATTTACTAT 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TAAATACAACAAGATTTTTGTTGACGCCTTCTGGAATAGCAGAAAACAATCATTTACTAT 900
Query 947 GCACTTGCTGCAACTCATGACATCATGGGCTGTTGTATGTGAAGTGTGGTACTTGGAACC 1006
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GCACTTGCTGCAACTCATGACATCATGGGCTGTTGTGTGTGAAGTGTGGTACTTGGAACC 960
Query 1007 ACAAACCATAAGGCCCGGTGAAACAGGAATTGAATTTGCAGAGAGGGTCAGAGACATGAT 1066
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 961 CCAAACTATAAGGCCCGGTGAAACAGGGATTGAGTTTGCAGAGAGGGTCAGAGACATGAT 1020
Query 1067 ATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATACTTGAAGTATTCGAGACC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATACTTGAAGTATTCGAGACC 1080
Query 1127 AAGCCCCAAGCATAGTGAACGCAAGCAACAGAGTTTCGCAGAGTCGATCCTGGCTAGATT 1186
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGCTCCAAGCATAGTGAACGCAAGCAACAGAGTTTCGCAGAGTCGATCCTGGCTAGATT 1140
Query 1187 GGAAGAGAAGTGAATGTAAAGAT-GAAGTTATATT 1220
||||||||||||||||||||||| |||| ||||||
Sbjct 1141 GGAAGAGAAGTGAATGTAAAGATTGAAGCTATATT 1175
> Ahg939525 jgi|Araly1|939525|scaffold_600069.1
Length=521
Score = 196 bits (106), Expect = 3e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 990 GTGTGGTACTTGGAACCACAAACCATAAGGCCCGGTGAAACAGGAATTGAATTTGCAGAG 1049
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 364 GTGTGGTACTTGGAACCTCAAACTATAAGGCCCGGTGAAACAGGGATTGAGTTTGCAGAG 423
Query 1050 AGGGTCAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATAC 1109
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGGGTAAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATAC 483
Query 1110 T 1110
|
Sbjct 484 T 484
> Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680
Length=483
Score = 196 bits (106), Expect = 3e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 990 GTGTGGTACTTGGAACCACAAACCATAAGGCCCGGTGAAACAGGA-ATTGAATTTGCAGA 1048
||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||
Sbjct 346 GTGTGGTACTTGGAACCTCAAACCATAAGGCCCGGTGAAACA-GAGATTGAGTTTGCAGA 404
Query 1049 GAGGGTCAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATA 1108
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GAGGGTAAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATA 464
Query 1109 CT 1110
||
Sbjct 465 CT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5