BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G60630.1

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332313 jgi|Araly1|332313|fgenesh1_pm.C_scaffold_8001656           259    2e-68


> Ahg332313 jgi|Araly1|332313|fgenesh1_pm.C_scaffold_8001656
Length=414

 Score =  259 bits (140),  Expect = 2e-68
 Identities = 242/287 (84%), Gaps = 24/287 (8%)
 Strand=Plus/Plus

Query  196  CCGAAATGTCTCCATCTCCGACGATGTCTAATGATTACGATTATCCGTCATCGTCTCAAC  255
            ||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| 
Sbjct  152  CCGAAATGTCTCCATCTCCGACGATGTCTGATGATAACGATTATCCCTCTTCGTCTCAAT  211

Query  256  TTACGGAATCCAATGATCTCAACTACACTGATAGTACCAGACCGGGAGGCGAAGAAGCAT  315
            ||||||| |||| |||||||||||||| |||||||||||||     |  |   |  |   
Sbjct  212  TTACGGATTCCAGTGATCTCAACTACATTGATAGTACCAGA-----A--C---G--G---  256

Query  316  CCGTAGGTGGTGAAAATGGCGGAGGAGGAGGAAAGAAAACCGGAATCGCTGTTGTTGGAT  375
              | ||| ||||||||||||   || ||||||||||| |||||||||| ||  || ||| 
Sbjct  257  --G-AGGCGGTGAAAATGGC---GGCGGAGGAAAGAAGACCGGAATCG-TG--GTGGGAG  307

Query  376  CGATTGCAGCCGCGAGTATGGTTGGATTCGGTGGTTATGTGTTGAAGAAACGGCGAGAGA  435
            ||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  308  CGATTTCAGCTGCGAGTATGGTTGGATTCGGCGGTTATCTGTTGAAGAAACGGCGAGAGA  367

Query  436  ACATTCGTCGATCCCGGTATGGTTACGCTTCCACTGAATTCTTCTGA  482
            |||||||| |||| |||||||| ||||| ||||||||||||||||||
Sbjct  368  ACATTCGTAGATCGCGGTATGGATACGCCTCCACTGAATTCTTCTGA  414


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 100/113 (88%), Gaps = 6/113 (5%)
 Strand=Plus/Plus

Query  107  TGTAGCTCTTTTAATGGTGTCCGGTGAGATTTCAACTGAAGAAATTTCACCGGCGATTGA  166
            ||| ||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  21   TGTGGCTCTTTTAGTTGTGACCGGTGAGATTTCAACTGAAGAAGTTTCACCGGCGATTGA  80

Query  167  G-C--A---TTCGTCGTCTCTGCCGCAATCAGAAACCGAAATGTCTCCATCTC  213
            | |  |    ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  81   GCCTGAGCCATCGTCGTCTCTGCCGCAATCAGAAACCGAAATGCCTCCATCTC  133



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829729410


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5