BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60640.1
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496212 jgi|Araly1|496212|fgenesh2_kg.8__2028__AT5G60640.1 3038 0.0
> Ahg496212 jgi|Araly1|496212|fgenesh2_kg.8__2028__AT5G60640.1
Length=1974
Score = 3038 bits (1645), Expect = 0.0
Identities = 1846/1943 (95%), Gaps = 14/1943 (1%)
Strand=Plus/Plus
Query 37 CACACTAAAATGGCGTTCCGCGTTTTGCTCCTCTTCTCACTCACCGCACTTCTCATCTTC 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACACTAAAATGGCGTTCCGCGTTTTGCTCCTCTTCTCACTCACCGCACTTCTCATCTTC 60
Query 97 TCCGCCGTTTCTCCTTCTTTCGCCGCTTCTTCCTCCGACGACGTTGACGATGAGGATCTC 156
|||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||
Sbjct 61 TCCGCCGTTTCTCCTTCTTTTGCCACCTCTTCCTCCGACGACGTCGACGATGAGGATCTC 120
Query 157 AGCTTCCTCGAAGATCTCAAAGAAGACGACGTTCCCGGCGCTGACTCACTCTCTTCCTCA 216
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGTTTCCTCGAAGATCTCAAAGAAGACGACGTTCCCGGCGCTGACTCACTCTCCTCCTCA 180
Query 217 ACTGGATTTGACGAATTCGAAGGAGGAGAAGAAGAAGATCCCGATATGTACAACGACGAT 276
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 ACTGGACTTGACGAATTCGAAGGAGGTGAAGACGAAGATCCCGATATGTACAACGACGAT 240
Query 277 GACGATGAAGAAGGAGATTTTTCCGATCTAGGTAATCCGGATTCCGATCCGTTACCGACG 336
||||| |||||||||||||| |||||||| |||||||| |||||||||||| | ||||||
Sbjct 241 GACGACGAAGAAGGAGATTTCTCCGATCTGGGTAATCCAGATTCCGATCCGCTCCCGACG 300
Query 337 CCGGAGATTGATGAGAAAGACGTTGTGGTTATCAAGGAGCGTAACTTCACTGATGTGATT 396
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 CCGGAAATTGATGAGAAAGACGTTGTTGTTATCAAGGAGCGTAACTTCACTGACGTGATT 360
Query 397 GAGAATAATCAATACGTTTTGGTTGAGTTTTATGCTCCGTGGTGTGGTCATTGTCAGTCT 456
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 GAGAATAATCAATACGTTTTGGTTGAGTTCTATGCGCCGTGGTGTGGTCATTGTCAGTCT 420
Query 457 CTTGCTCCTGAGTATGCTGCTGCTGCCACGGAGCTTAAGGAAGATGGTGTTGTTTTGGCT 516
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 CTTGCTCCTGAGTATGCTGCTGCTGCGACGGAGCTTAAGGACGATGGTGTTGTTTTGGCT 480
Query 517 AAGATTGATGCGACGGAGGAGAATGAGTTAGCTCAGGAGTATCGTGTTCAGGGCTTTCCG 576
|| || |||||||||||||||||||| |||||||||||||| |||||||||| || |||
Sbjct 481 AAAATCGATGCGACGGAGGAGAATGAACTAGCTCAGGAGTATAGTGTTCAGGGATTCCCG 540
Query 577 ACGCTTCTTTTCTTCGTTGATGGTGAGCACAAGCCTTACACTGGAGGAAGGACTAAAGAA 636
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 541 ACGATTATTTTCTTCGTTGATGGTGAACACAAGCCTTACACTGGAGGAAGGACTAAGGAA 600
Query 637 ACAATTGTGACATGGGTGAAGAAGAAGATTGGTCCTGGTGTGTATAATCTAACTACATTA 696
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAATCGTGACATGGGTGAAGAAGAAGATTGGTCCTGGTGTGTATAATCTAACTACATTA 660
Query 697 GATGATGCTGAGAAAGTGTTGACTTCTGGGAACAAAGTTGTTTTGGGATACTTGAACTCC 756
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 GATGATGCTGAGAAAGTGTTGACTTCTGGGAACAAAGTCGTTTTGGGATACTTGAACTCC 720
Query 757 TTGGTGGGTGTTGAGCACGATCAGCTTAATGCTGCTTCCAAAGCTGAAGACGATGTGAAC 816
|||||||| |||||||||||||| ||| |||| ||||||||| ||||||||||||||||
Sbjct 721 TTGGTGGGCGTTGAGCACGATCAACTTGCTGCTACTTCCAAAGTTGAAGACGATGTGAAC 780
Query 817 TTTTATCAAACAGTGAATCCTGATGTTGCAAAGATGTTTCACCTTGATCCGGAGTCTAAA 876
|| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 781 TTCTATCAAACTGTGAATCCTGATGTTGCCAAGATGTTTCACATTGATCCGGAGTCTAAA 840
Query 877 AGGCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGATGGAGAA 936
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||
Sbjct 841 AGGCCTGCTCTTGTCCTAGTTAAGAGGGAAGAGGAGAAGATTAGCCATTATGATGGGGAA 900
Query 937 TTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTT 996
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTGTTAAGTCTGCTTTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTT 960
Query 997 TTCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGTTGTTGTTG 1056
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCACCAGAGAGACTGCACCAGAAATTTTTGAGAGTGCAATCAAGAAACAGTTGTTGTTG 1020
Query 1057 TTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCA 1116
|||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1021 TTTGCAACCCAAAATGACTCTGAAAAGGTTCTTCCGGAATTTCAAGAAGCAGCGAAATCA 1080
Query 1117 TTCAAAGGAAAGCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCA 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 TTCAAAGGAAAGCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAACCA 1140
Query 1177 GTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAACTTATTGGCT-ACACAGGGAA 1235
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1141 GTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAACTTATTG-CTTACACAGGGAA 1199
Query 1236 TGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGATATT 1295
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 TGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCAAGTCAGATAAAATTAAGATATT 1259
Query 1296 TGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGA 1319
Query 1356 AAAGAACGATGAAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGA 1415
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAAGAACGATGGAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGA 1379
Query 1416 CGATTCTAAAGATGTGCTTCTCGAGGTCTACGCACCATGGTGTGGCCATTGCCAAGCCCT 1475
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1380 CGATTCTAAAGATGTGCTTCTCGAGGTCTATGCACCATGGTGTGGCCATTGCCAAGCCCT 1439
Query 1476 TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAAC 1535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1440 TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAGC 1499
Query 1536 CAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGGCTGAGGGGTTCCCTACCAT 1595
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CAAGATGGATGGAACAACCAACGAACATCCCAAGGCAAAGGCTGAGGGGTTCCCTACCAT 1559
Query 1596 TCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGATTACTGTAGATACAGACCGCAC 1655
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 TCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGATAACTGTAGATACAGACCGCAC 1619
Query 1656 TGTGGTTGCATTTTACAAGTTCTTAAGGAAACACGCAACGATCCCATTCAAACTGGAGAA 1715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGTGGTTGCATTTTACAAGTTTTTAAGGAAACACGCAACGATCCCATTCAAACTGGAGAA 1679
Query 1716 ACCTGCATCAACCGAATCACCTAAAACTGCAGAGTCCACACCAAAAGTAGAAACTACCGA 1775
|||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||
Sbjct 1680 ACCTGCATCAACCGAATCTCCTAAAACTGCCGAGAGCACACCTAAAGTAGAAACTACCGA 1739
Query 1776 GACCAAAGAATCACCCGATAGCACGACAAAGAGTAGCCAAAGTGACTCGAAGGACGAATT 1835
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GACCAAAGAATCACCTGATAGCACGACAAAGAGTAGCCAAAGTGACTCGAAGGACGAATT 1799
Query 1836 GTGATCAGAA---AAGGGTATAA-TATATATTACATGTCTCCTTAAGTTGTTATATGTAT 1891
|||||||||| ||| | ||| | ||||| ||||||||||||| ||||||||
Sbjct 1800 GTGATCAGAAGTTAAGAA-ACGGGTAT-T-TTACACGTCTCCTTAAGTT---ATATGTAT 1853
Query 1892 GATCAGAATTGTCACATCATGAGTTTGGACTAGATAAAGATGG-GAATTAAAGTAATTTT 1950
|||||||||||| ||| |||||||||||||||| |||||||| || | |||||||||||
Sbjct 1854 GATCAGAATTGTGTCATTATGAGTTTGGACTAGAGAAAGATGGAGA-TAAAAGTAATTTT 1912
Query 1951 AGTTTTGAGAAAGACAATTTCTT 1973
|||| |||| |||||||||||||
Sbjct 1913 AGTTATGAGTAAGACAATTTCTT 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74161707015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5