BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G60650.1

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496214 jgi|Araly1|496214|fgenesh2_kg.8__2030__AT5G60650.1         676    0.0  


> Ahg496214 jgi|Araly1|496214|fgenesh2_kg.8__2030__AT5G60650.1
Length=515

 Score =  676 bits (366),  Expect = 0.0
 Identities = 446/483 (92%), Gaps = 11/483 (2%)
 Strand=Plus/Plus

Query  38   aaaCAACAACATCATGACATACCTAACTCACTCTTTGCTCTTCTTCTTCTCTTGCTTATC  97
            ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct  1    AAACAACAACAACATGACATACCTAACTCATTCTTTGTTCTTCTTTTTCTCTTGCTTATC  60

Query  98   TATGCTTCTTTGCGTCTCCATTGCAGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA  157
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  61   TATGCTTCTTTGCGTCTCCATTGCTGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA  120

Query  158  CCCATCTGCTTTCTCTCCACAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA  217
             || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCCGTCTGCTTTCTCTCCAGAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA  180

Query  218  TCACAATAATCCACCAAAATCCTCGCCTTCTCCGCTTTCACTTTCACCTTCACCTTCAAA  277
            |||||||||||||||||||  ||| |||||| |||   ||   |||||||||||||||||
Sbjct  181  TCACAATAATCCACCAAAAAACTCACCTTCTTCGC---CA---TCACCTTCACCTTCAAA  234

Query  278  AACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC  337
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  GACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC  294

Query  338  AAGTGAGAGTCGACG-AGA-A-GAAGAAGGACGTGGAGAAACCATCGGAGTAGTGTTAGG  394
            |||||||||| | || ||| | ||||||||||| ||||||||||| |||||||| |||||
Sbjct  295  AAGTGAGAGTAGTCGCAGAGAAGAAGAAGGACGAGGAGAAACCATTGGAGTAGTATTAGG  354

Query  395  ACTTTCTTTCATCGCATTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC  454
             ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  355  CCTTTCTTTCGTCGCGTTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC  414

Query  455  TAATATCATCCGCACTATTGTCACTCACTCTGACGCTTAAATATA-CCAAAAACATACTT  513
            |||||| || ||||||||||||||||||||||| |||| ||| || ||||||| ||||||
Sbjct  415  TAATATGATTCGCACTATTGTCACTCACTCTGATGCTTGAAT-TAACCAAAAATATACTT  473

Query  514  CTT  516
            |||
Sbjct  474  CTT  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22187537694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5