BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60660.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950814 jgi|Araly1|950814|scaffold_802701.1 1352 0.0
> Ahg950814 jgi|Araly1|950814|scaffold_802701.1
Length=900
Score = 1352 bits (732), Expect = 0.0
Identities = 822/865 (95%), Gaps = 7/865 (1%)
Strand=Plus/Plus
Query 32 TCTCTCATCATCTTTGGCCATGGCAAAAGACTTG--GATG-TGAACGAGAGTGGACCACC 88
|||||| ||||||||||||||||||||||| || |||| | || ||| ||||| ||||
Sbjct 5 TCTCTC-TCATCTTTGGCCATGGCAAAAGA--TGATGATGTTCAA-GAGGGTGGAGCACC 60
Query 89 GGCGGCGAGAGACTACAAGGATCCGCCTCCCGCACCATTTTTCGACATGGAGGAGCTTAG 148
||||||||||||||||| ||||||||||||||||||||| || ||||||||||| || |
Sbjct 61 GGCGGCGAGAGACTACAGGGATCCGCCTCCCGCACCATTGTTGGACATGGAGGAAATTCG 120
Query 149 GAAATGGCCGCTTTATAGAGCGGTCATAGCTGAGTTTGTAGCAACACTTCTGTTCCTCTA 208
||| ||| |||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 121 GAAGTGGTCGCTATATAGAGCGGTCATAGCTGAGTTCGTGGCGACACTTCTGTTCCTCTA 180
Query 209 CGTCTCAATCCTGACTGTAATCGGCTACAAAGCTCAAACCGATGCAACCGCCGGAGGAGT 268
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCTCAATCCTAACCGTAATCGGCTACAAAGCTCAAACCGATGCAACCGCCGGAGGAGT 240
Query 269 GGATTGTGGCGGCGTAGGAATATTGGGTATTGCGTGGGCTTTCGGTGGAATGATCTTTGT 328
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 241 AGATTGCGGCGGCGTAGGAATATTGGGAATTGCGTGGGCGATCGGTGGAATGATCTTTGT 300
Query 329 TCTCGTTTACTGTACCGCCGGTATCTCCGGTGGTCATATAAATCCGGCTGTGACGGTGGG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCGTTTACTGTACCGCCGGTATCTCCGGTGGTCATATAAATCCGGCTGTGACGGTGGG 360
Query 389 ACTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTG 420
Query 449 CCTTGGTGCCATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG 508
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTGGTGCCATCTGCGGTTGTGGTCTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG 480
Query 509 ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGC 568
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 481 ATATGGAGGTGGAGCCAACGAGCTCGCCGACGGCTACAACAAAGGTACCGGACTCGGTGC 540
Query 569 CGAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTCTCGGCAACCGATCCCAAGCG 628
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 541 CGAGATCATCGGAACTTTTGTCCTTGTTTACACCGTCTTCTCGGCCACCGATCCCAAGCG 600
Query 629 AAATGCTCGTGACTCTCACGTGCCAGTTTTGGCTCCACTTCCCATTGGCTTTGCCGTCTT 688
|| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 601 AAGTGCTCGTGACTCTCACGTGCCAGTGTTGGCGCCACTTCCCATTGGATTTGCCGTCTT 660
Query 689 CATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGTATCAACCCGGCTCGTAGCTT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGTATCAACCCGGCTCGTAGCTT 720
Query 749 TGGAGCTGCCGTTATTTACAACAACGAAAAGGCCTGGGACGACCAATGGATTTTTTGGGT 808
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TGGAGCTGCCGTTATTTACAACAACGAAAAGGCCTGGGACGACCAATGGATATTTTGGGT 780
Query 809 TGGACCGATGATCGGAGCAGCAGCAGCAGCGTTTTACCATCAGTTTATTTTAAGAGCGGC 868
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 TGGACCGATGATCGGAGCAGCAGCGGCAGCGTTTTACCATCAGTTTATTTTAAGAGCGGC 840
Query 869 TGCGATTAAAGCTCTTGGCTCATTT 893
||||||||||||||||||||| |||
Sbjct 841 TGCGATTAAAGCTCTTGGCTCCTTT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5