BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60670.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496216 jgi|Araly1|496216|fgenesh2_kg.8__2032__AT5G60670.1 880 0.0
Ahg938244 jgi|Araly1|938244|scaffold_502435.1 497 3e-140
Ahg934367 jgi|Araly1|934367|scaffold_402355.1 468 3e-131
> Ahg496216 jgi|Araly1|496216|fgenesh2_kg.8__2032__AT5G60670.1
Length=631
Score = 880 bits (476), Expect = 0.0
Identities = 608/665 (91%), Gaps = 36/665 (5%)
Strand=Plus/Plus
Query 11 GAGAAGAATCA-GAGAAAATGCCGCCGAAATTGGATCCATCTCAAATCGTCGACGTCTAC 69
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAGAA-AAGGAGAAAATGCCGCCGAAATTGGATCCATCTCAAATCGTCGACGTCTAC 59
Query 70 GTCCGAGTCACCGGAGGTGAGGTCGGAGCAGCGTCTTCACTCGCTCCAAAGATCGGTCCA 129
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 GTCCGAGTCACCGGAGGTGAGGTCGGAGCAGCGTCATCACTCGCTCCAAAGATCGGTCCA 119
Query 130 CTCGGTCTGGCACC-AAAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATG 188
|||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 CTCGGTCTCGCACCGAAA-AAGATCGGAGAAGACATCGCCAAAGAGACAGCAAAAGAATG 178
Query 189 GAAAGGTCTTCGAGTCACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGT 248
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 179 GAAAGGTCTTAGAGTCACCGTGAAGCTCACGGTTCAGAATCGTCAAGCTAAGGTCACAGT 238
Query 249 GGTTCCATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 GGTTCCATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATCGGAA 298
Query 309 GAAAGTGAAGAACATCAAACATAATGGCAACATTTCGTTTGATGATGTGATTGAGATTGC 368
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 GAAAGTGAAGAACATCAAACATAATGGGAACATTTCGTTTGATGATGTGATTGAGATTGC 358
Query 369 TAAGATAATGCGTCCTAGATCTATCGCTAAGGAATTGAGTGGAACAGTGAAGGAGATTTT 428
||||||||||||||||||||||| | | | | || | || ||| | ||
Sbjct 359 GAAGATAATGCGTCCTAGATCTATGG--A-G-A-TT---T-------TG--GGA-ACTT- 399
Query 429 AGGAACTTGTGTCTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGA 488
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 -G----T-GT--CTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGA 451
Query 489 AGAAATTAACAGTGGTGACATTGATATTCCTAACGAGTGATAAAGGtttttacttttgag 548
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 452 AGAAATTAACAGTGGTGACATTGATATTCCTAACGAGTGATAAAGGTTTT-ACTTTTGAG 510
Query 549 ttctctatcgttttattttttgtatttgattttgaggatttgGTATTAGTAATACTATAT 608
|||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 511 TTCTCTATCGTTTT-TTTG--GTATTTGATTTTGAGGATTTGGTATTAGTA-TACTATAT 566
Query 609 TTCGGAAGTTGAGAATTGTTGGCTTTTGCCCATTTGAATCCTTTCTTGGGATTAATCAAA 668
|| |||||||||| ||||||||||||||| ||||||||||| ||||||||| ||| | |
Sbjct 567 TTTGGAAGTTGAGGATTGTTGGCTTTTGCAAATTTGAATCCTCTCTTGGGATCAATTAGA 626
Query 669 ATGTT 673
|||||
Sbjct 627 ATGTT 631
> Ahg938244 jgi|Araly1|938244|scaffold_502435.1
Length=549
Score = 497 bits (269), Expect = 3e-140
Identities = 431/509 (85%), Gaps = 11/509 (2%)
Strand=Plus/Plus
Query 17 AATCAGAGAA-AATGCCGCCGAAATTGGATCC-ATCTCAAATCGTCGACGTCTACGTCCG 74
||||| |||| ||||||||||| ||||| || | | || |||||||| || ||||||||
Sbjct 16 AATCACAGAACCATGCCGCCGAAGTTGGACCCGAGC-CAGATCGTCGATGTGTACGTCCG 74
Query 75 AGTCACCGGAGGTGAGGTCGGAGCAGCGTCTTCACTCGCTCCAAAGATCGGTCCACTCGG 134
|| |||||||| || |||||||| || ||| || |||||||||||||||||||||||
Sbjct 75 TGTAACCGGAGGAGAAGTCGGAGCCGCCAGTTCTCTAGCTCCAAAGATCGGTCCACTCGG 134
Query 135 TCTGGCACCAAAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATGGAAAGG 194
||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 135 TCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAAGAATGGAAAGG 194
Query 195 TCTTCGAGTCACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGTGGTTCC 254
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 195 ACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTCACCGTGGTGCC 254
Query 255 ATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAAGAAAG- 313
||| || || ||||| |||||||| || | ||||||||||||||||| | || ||||
Sbjct 255 ATCTGCTGCAGCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGACCGCAA-AAAGG 313
Query 314 TGAAGAACATCAAACATAATGGCAACATTTCGTTT-GATGATGTGATTGAGATTGCTAAG 372
|||||||||| || ||||| || ||||| || ||| |||||||||||||||||||||| |
Sbjct 314 TGAAGAACATTAAGCATAACGGTAACATCTC-TTTCGATGATGTGATTGAGATTGCTAGG 372
Query 373 ATAATGCGTCCTAGATCTATCGCTAAGGAATTGAGTGGAACAGTGAAGGAGATT-TTAGG 431
|| ||| | ||||||||||| |||||||| ||||||| || |||| ||||||| || ||
Sbjct 373 ATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAGATTCTTGGG 432
Query 432 AACTTGTGTCTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGAAGA 491
| | ||||||||||| || |||||||||||||| |||||||| |||||||||||| | ||
Sbjct 433 A-CGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTTCAGCAGGA 491
Query 492 AATT-AACAGTGGTGACATTGATATTCCT 519
||| || | ||||| || |||||||||
Sbjct 492 GATTCAAGAA-GGTGAGATCGATATTCCT 519
> Ahg934367 jgi|Araly1|934367|scaffold_402355.1
Length=542
Score = 468 bits (253), Expect = 3e-131
Identities = 419/499 (84%), Gaps = 12/499 (2%)
Strand=Plus/Plus
Query 27 AATGCCGCCGAAATTGGATCC-ATCTCAAATCGTCGACGTCTACGTCCGAGTCACCGGAG 85
|||||||||||| |||||||| | ||| ||||| || ||||||||||| || |||||||
Sbjct 20 AATGCCGCCGAAGTTGGATCCGA-GTCAGATCGTTGAGGTCTACGTCCGTGTAACCGGAG 78
Query 86 GTGAGGTCGGAGCAGCGTCTTCACTCGCT-CCAAAGATCGGTCCACTCGGTCTGGCACCA 144
| || |||||||||||| ||| || ||| ||||| |||||||| || ||||| ||||||
Sbjct 79 GAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAA-ATCGGTCCGCTAGGTCTTGCACCA 137
Query 145 AAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATGGAAAGGTCTT-CGAGT 203
||||||||||||||||| ||||| ||||| || || || ||||||||||| || || ||
Sbjct 138 AAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCCAAGGAATGGAAAGG-ATTACGTGT 196
Query 204 CACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGTGGTTCCATCCGCAGC 263
||| || ||||| ||||| ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 197 CACTGTCAAGCTAACGGTGCAGAATCGTCAAGCTAAAGTCTCGGTGGTTCCATCAGCAGC 256
Query 264 GGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAAGAAAGTGAAGAACAT 323
|| || |||||||| || | || ||||| ||||||||||||||||| |||||||||||
Sbjct 257 TGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGAAGAAGGTGAAGAACAT 316
Query 324 CAAACATAATGGCAACATTTCGTTTGATGATGTGATTGAGATTGCTAAGATAATGCGTCC 383
||||| ||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 317 TAAACACAATGGGAATATTTCGTTTGATGATGTGATTGAGATTGCTAGGATCATGAGACC 376
Query 384 TAGATCTATCGCTAAGGAATTGAGTGGAACAGTGA-AGGAGATTTTAGGAACTTGTGTCT 442
||||||||| |||||||||||||||||||| |||| || ||||| | || |||||||| |
Sbjct 377 TAGATCTATTGCTAAGGAATTGAGTGGAACTGTGAGAG-AGATTCTGGGGACTTGTGTAT 435
Query 443 CTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGAAGAAATT-AACAGT 501
|||||||||| ||||| ||||| ||||| ||||| ||| |||| | || ||| || | |
Sbjct 436 CTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAACAGGAGATTCAAGA-T 494
Query 502 GGTGACA-TTGATATTCCT 519
||||| | |||| ||||||
Sbjct 495 GGTGA-AGTTGAGATTCCT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5