BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60680.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496217 jgi|Araly1|496217|fgenesh2_kg.8__2033__AT5G60680.1 1035 0.0
Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1 176 2e-43
Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1 130 2e-29
> Ahg496217 jgi|Araly1|496217|fgenesh2_kg.8__2033__AT5G60680.1
Length=787
Score = 1035 bits (560), Expect = 0.0
Identities = 751/834 (90%), Gaps = 49/834 (6%)
Strand=Plus/Plus
Query 1 TAAAACCAAAGACTCCCTCACGACTAATTCTTCTTCTTCATTAGCAGATTAAACAAATCT 60
||||| |||||||| |||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1 TAAAAGCAAAGACTGCCTCACGACTAATTCTTCTTCTTCATTACCA-AATAAACAAATCT 59
Query 61 CAACATTCGAATTTTTAAAAATTCTTCAAAATCTCTTCTTCAATGGCGACGGGAAAGAGT 120
|||| |||||| || ||| | |||||||| |||||||||||||||||||||
Sbjct 60 CAACTTTCGAA---TT-----TTC--C---ATCTCTTCATCAATGGCGACGGGAAAGAGT 106
Query 121 TACTACGCTAGGCCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TACTACGCTAGACCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 166
Query 181 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTTCAATCCAATCCACTCCGATTCA 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 167 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTACAATCCAATCCACTCCGATTCA 226
Query 241 CCAGATTTTTGCCGTAAAATCTCTTCATCAGTCAGATCCGGTAAAAAATCGTCGAATCGT 300
||||||||| |||| |||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 227 CCAGATTTTCGCCGCAAAATCTCTTCATCAGCCAGATCCGCTAAAAAACCGTCGAATCGT 286
Query 301 CCCTCCGCCGCTTCCTCCGCCGCAGCAGCGTCGTCGCTTCCTGTTAACGTGCCGGACTGG 360
|||||||||| | ||||||||||||||||||||| ||||| |||||||||
Sbjct 287 CCCTCCGCCG-----T-------AGCAGCGTCGTCGCTTCCTGTAAACGTACCGGACTGG 334
Query 361 TCCAAGATTCTCCGCGG-AGAATACCGCGATAACCGACGGAGAAGCATCGAGGATAACGA 419
|||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 335 TCCAAGATTCTCCG-GGAAGAATACCGTGATAACCGCCGGAGAAGCATCGAGGATAACGA 393
Query 420 CGACGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGTTTCTGGC 479
||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||
Sbjct 394 CGACGAT---GATGATAACGAAGACGGAGGCGGTTGGTTGCCGCCGCATGAGTTTCTAGC 450
Query 480 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 451 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTTGGGAGGACATTGAAAGGAAG 510
Query 540 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAATTTGGGTTCCAAGATTAAATATT 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 511 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAAATTGGGTTCCAAGATTAAATATT 570
Query 600 TGGAAACTTTTGGAGTTTTCCTTTAATTTTTGGCTTACTTCAATCATTTTCTCAAGTAAC 659
|||| |||| ||| | ||| |||| || ||||||||||||||||||||||||||
Sbjct 571 TGGAG--TTTTCC--TTT-CATTT--TTTT-GGTTTACTTCAATCATTTTCTCAAGTAAC 622
Query 660 TGTCagagaagagagagagCATGTAATATTTCTAGAAATGCCCTCCATTTATCGTTATAT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 623 TGTCAGAGAAGAGAGAGAGCATGTAATATTTCTAGAAATGCCCTCGATTTATCGTTATAT 682
Query 720 TCCGAAAATCTTACCCTATGTAATTGtttttttaacttttgagatttttatcacattttg 779
|||||||||||||||| |||||||| ||||| ||||| | |||| | ||||||||
Sbjct 683 TCCGAAAATCTTACCC-ATGTAATT-TTTTT----CTTTT-AC-TTTTGAG-ACATTTTG 733
Query 780 cgtaatgagtaatagataatgttttcttttttt-GGAAGAGTGTTTGTTTTGTT 832
||||||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 734 CGTAATGAGTAATAGATTATGTTTTCTTTTTTTTGGAAGAATGTTTGTTTTGTT 787
> Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1
Length=666
Score = 176 bits (95), Expect = 2e-43
Identities = 149/174 (86%), Gaps = 7/174 (4%)
Strand=Plus/Plus
Query 423 CGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGT-TTCTGGCGA 481
|||| ||||||| ||| ||||||| | || || ||||||||||||| || ||||||
Sbjct 293 CGATAACGATGACGACGGAGACGGT-G-GA-AAATTGCCGCCGCATGAGTATT-TGGCGA 348
Query 482 AGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAGAG 541
|||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||
Sbjct 349 AGACGAGAATGGCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAG 408
Query 542 ATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAA-ATTTGGGTTCCAAGATTAA 594
|| ||||||||||||||||||||||||| ||||| | | ||||| |||||||
Sbjct 409 ATATGAGTAGGGTTCGAAATGCAATTTTGGAAAAGACT-GGGTTTTTAGATTAA 461
> Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1
Length=763
Score = 130 bits (70), Expect = 2e-29
Identities = 123/147 (84%), Gaps = 9/147 (6%)
Strand=Plus/Plus
Query 456 GTTACCGCCGCATGAGTTTCTGGCGAAGAC-GAGAATGGCTTCGTTCTCGGTTCATGAAG 514
||| ||||||||||| || || ||||| | ||| |||||||| || |||||||||||||
Sbjct 414 GTT-CCGCCGCATGAATTGCTTGCGAA-CCGGAGGATGGCTTCATTTTCGGTTCATGAAG 471
Query 515 GAG-TAGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTTCGAAATGCAATTTTTGAA 573
| | | ||||||||||||||||||||||||||||||||||| |||||| | |||||| ||
Sbjct 472 GTGCT-GGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTGCGAAATACTATTTTT-AA 529
Query 574 AAATTTG-GGT-TCCAAGATTAAATAT 598
|| || | || || |||||||| |||
Sbjct 530 AA-TTAGAGGGATCGAAGATTAATTAT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5