BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60700.1
Length=2426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917815 jgi|Araly1|917815|Al_scaffold_0008_2566 3591 0.0
> Ahg917815 jgi|Araly1|917815|Al_scaffold_0008_2566
Length=2799
Score = 3591 bits (1944), Expect = 0.0
Identities = 2134/2228 (96%), Gaps = 4/2228 (0%)
Strand=Plus/Plus
Query 1 GCTCAGCTTGATTCTCTTCTCCACCAGACGCTACCGTTTCACCATGTCTGGGTTTTGGCC 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 574 GCTCAGCTTGATTCTCTTCTCCACCAAACGCTGCCGTTTCACCATGTCTGGGTTTTGGCC 633
Query 61 TTCGGGAGTCCTAACGAAGCTTCTCTCCGGCGAATCGCCGGAAGTTACAACGATTCTCGA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTCGGAAGTCCTAACGAAGCTTCTCTCCGGCGAATCGCCGGAAGTTACAACGATTCTCGA 693
Query 121 ATCAGCTTCATCAGCTCAAACTACGATTTCAAATACTATGGAAGATTCCAGATCGCGCTT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 ATCAGCTTCATCAGCTCAAACTACGACTTCAAATACTATGGAAGATTCCAGATCGCGCTT 753
Query 181 CAAACAGAAGCAGATCTGGTTTATATCCTCGACGATGATATGATTCCTGGGAAGAAAATG 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 754 CAAACAGAAGCAGATCTGGTTTACATCCTCGACGATGATATGATTCCTGGGAAGAAAATG 813
Query 241 CTTCAGATGCTCTCACACGTCGCCGGAACTGAGAAATACGAAAACTCTGTTTTGGGAAGT 300
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 814 CTTCAGATGCTCTCACACGTCGCCGGAACTGAGAAGTACGAGAACTCAGTTTTGGGAAGT 873
Query 301 ATCGGAAGGATTTTACCTTTCCGGCAAAAGGATTTCACGTTTCCGAGCTATAGGAAGTTT 360
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 874 ATCGGACGGATTTTACCTTTCCGGCAAAAGGATTTCACGTTTCCAAGCTATAGGAAGTTT 933
Query 361 AGATCTAAGGAAGCTGGCCTTTACTTGCCTGATCCAGCTTATGACATCACCTTAGATCGG 420
||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 934 AGATCAAAGGAAGCTGGGCTTTATTTGCCTGATCCGGCTTATGACATCACTTTAGATCGG 993
Query 421 ATTCTTCAGGTTGATTTCTTATCAAGCTCGTGGTTCTTATCGGCGGAGCTCGTGAAAGCG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATTCTTCAGGTTGATTTCTTATCAAGCTCGTGGTTCTTATCGGCGGAGCTCGTGAAAGCT 1053
Query 481 TTGTTCATCGAAAAACCATTCACATTCTCTACCGGTGAAGATCTTCATCTCAGTTATCAG 540
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1054 TTATTCATCGAAAAACCATTCACATTCTCTACCGGCGAAGATCTTCACCTGAGTTATCAG 1113
Query 541 CTTCAGAAATACAGAAATGCAGGTTCGTTTGTTCTTCCCGTTGATCCAAATGATAAGGAG 600
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1114 CTTCAGAAATACAGAAATGCAGGTTCTTTTGTTCTTCCTGTTGATCCAAATGATAAGGAG 1173
Query 601 ACTTGGGGAGATAGTGAACACAGGTTAGCTTATGTGTCTGAGACTACTGTGATATTT-AA 659
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 1174 ACATGGGGAGATAGTGAACACAGGCTAGCTTATGTGTCTGAGACTACTGTGAT-TTTCAA 1232
Query 660 AAACATTGTTGAAGTAAGAGATAACCAGTGGTGGAAAGCGCTTTCTACGGGTTATGTGAC 719
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1233 AAACATTGTTGAAGTAAGAGATAATCAATGGTGGAAAGCGCTTTCTACGGGTTATGTAAC 1292
Query 720 TCAATGGGCTGCAATGTATCCTCAGAAGATTGATGCTTTGTTTTACGCGCATTCGATTGA 779
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1293 TCAGTGGGCTGCAATGTATCCTCAGAAGATCGATGCTTTGTTTTACGCGCATTCCATTGA 1352
Query 780 TGAAGTTAAAGCACTTGGTCCTTTGCTGGAGAAGTTTAGAGGTACTGTTGGTAAAAAGGC 839
|||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1353 TGAAGTTATAGCACTTGGTCCTTTGCTTGAGAAGTTCAGAGGTACTGTGGGTAAAAAGGC 1412
Query 840 TTATATCGCGGTTTCGGGTGGGAAGTTCTGTCCGTGTGAGGATGCGGCGTCGGCTTTGAG 899
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1413 TTATATCGCGGTTTCGGGTGGGAAGTTCTGTCCTTGTGAGGATGCGGCCTCGGCCTTGAA 1472
Query 900 GTGGCCTAAGGTTGTTTGTAAGGAGAGGAGATTCAAGATTTTTGATTTGGAAGTTGGGGC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1473 ATGGCCTAAGGTTGTTTGTAAGGAGAGGAGATTCAAGATTTTTGATTTGGAAGTTGGAGC 1532
Query 960 TATTTTGGGTGTGTCGAACTCAGAGGTGCCTGTATTTCAAGCTGTGTATTCGAGCATGAA 1019
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TATCTTGGGTGTCTCGAACTCAGAGGTGCCTGTATTTCAAGCTGTGTATTCGAGCATGAA 1592
Query 1020 AGGGCTTATTAAGATTCATAATCCAAGCGTGGTGATTACGGTAGCTGATGCTGATCCGAA 1079
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1593 AGGGCTTATTAAGATTCATAATCCAAGTGTGGTGATAACGGTTGCTGATGCTGATCCTAA 1652
Query 1080 TGTCAAGAAAGCTTTGAAAATGGCTACCGAGACTAATTCTAATGGCACCGCATTGGTTCT 1139
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1653 TGTCAAGAAAGCTTTGAAAATGGCTACCGAGACAAATTCTAATGGCACTGCACTGGTTCT 1712
Query 1140 TCTACCGAGAGCTTCTATCTCCAAGGTTCTCTGGATGGCTGATCTAAGATCAACAGCATT 1199
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1713 TCTCCCGAGAGCTTCTATCTCCAAGGTTCTATGGATGGCTGATCTAAGATCAACAGCATT 1772
Query 1200 GCCAAACTGGAATAAGATGAGAGTCTCAGTGAACATCATCACCCAAAACCGAGCTCAATC 1259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1773 GCCAAACTGGAATAAGATGAGAGTATCAGTGAACATCATCACCCAAAACCGAGCTCAATC 1832
Query 1260 TTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGGTGACGAAATATCACT 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1833 TTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGGCGACGAAATATCACT 1892
Query 1320 CAGCTTCAACATGGATAGCAAAGTGGATGAAGAGACGATCAATGTAGTGAGCACATTCGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1893 CAGCTTCAACATGGATAGCAAAGTGGATGAAGAGACGATCAATGTAGTGAGCACATTTGA 1952
Query 1380 TTGGCCTCATGGACCAAAAACACTAAGAAGAAGAATCATCCAAGGAGGCTTAATCCGTGC 1439
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1953 TTGGCCTCACGGACCAAAAACCCTAAGAAGAAGAATCATCCAAGGAGGCTTAATCCGAGC 2012
Query 1440 TGTGAGCGAGAGTTGGTATCCAGCTTCTGATGATGATTTTGGTCTCTTGCTTGAAGACGA 1499
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2013 TGTCAGCGAGAGTTGGTATCCAGCTTCTGATGATGACTTTGGTCTCTTGCTTGAAGACGA 2072
Query 1500 CATTGAAGTCTCTCCATATTATTTCCTCTGGATCAAATACGCTTTACTTGCTTACCACTA 1559
||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 2073 CATTGAAGTCTCTCCTTATTATTTCCTCTGGATTAAATACGCTCTACTCGCTTACCACTA 2132
Query 1560 CGACCCTCAAGTCTCTTTCCCTGAACTCTCCTCGATCTCTCTTTACACGCCCAAAATCGT 1619
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2133 CGACCCTCAAGTCTCCTTCCCTGAACTCTCCTCGATCTCTCTTTACACACCCAAAATCGT 2192
Query 1620 TGAAGTTGTCAAAGAGAGACCCAAATGGAACCCAACAGATTTCTTCAAGCAAATCCATCC 1679
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2193 CGAAGTCGTTAAAGAGAGACCCAAATGGAACCCAACAGATTTCTTCAAACAAATCCATCC 2252
Query 1680 TCACACACCTTACCTTCACCAATTACCATGCAGCTGGGGAGCCGTTTTCTTCCCAAAGCA 1739
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2253 ACACACACCTTACCTTCATCAACTACCATGCAGCTGGGGAGCCGTTTTCTTCCCAAAGCA 2312
Query 1740 ATGGAGAGAGTTCTATGTCTACATGAACATGAGATTCACAGAGAACGCGAAAGCTAACCC 1799
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2313 ATGGAGAGAGTTCTATGTCTACATGAACATGAGATTCACGGAGAACGCCAAAGCTAACCC 2372
Query 1800 GGTTCAGATTCCGAAATCAAGAACCAACGGTTGGCAAGCGTCATGGAAGAAATTCTTAAT 1859
|||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 2373 GGTTCAGATTCCAAAATCGAGAACCAACGGTTGGCAAGCTTCTTGGAAGAAATTCTTAAT 2432
Query 1860 CGACATGATGTACCTGAGAGGATACGTTAGTCTATACCCAAACTTCCCTAACCAATCAAG 1919
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2433 CGACATGATGTACCTAAGAGGATACGTTAGTCTCTACCCAAACTTCCCTAACCAATCAAG 2492
Query 1920 CTTCTCAACCAACCACATGGAACCAGGAGCTCACATCGCAGCTAAAGACAATGTGGTGAA 1979
|||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 2493 CTTCTCAACCAACCACATGGAACCAGGAGCGCACATCGCAGCTAAAGACAACGTCGTAAA 2552
Query 1980 ACACAACAAAACCGA-TTTCGAAGTTCCATTGCTTATGGATGATTTCAGAAACTTCTTAC 2038
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2553 ACACAACAAAACCGACTTT-GAAGTTCCATTGCTTATGGATGATTTCAGAAACTTCTTAC 2611
Query 2039 CGAACCAGAAACTCCCTCCGCTTTCTAAGCTTCCATCACTCAATCTCTTCAACATGCCGG 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2612 CGAACCAGAAACTCCCTCCGCTTTCTAAGCTTCCATCACTCAATCTCTTCAACATGCCGG 2671
Query 2099 TTTCGCTTAAAGGTCTTAAAGCTGCAGGAGCTAAGCTTGGTCAAGATGTTCTTCGTTGCA 2158
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2672 TTTCTCTTAAAGGTCTTAAAGCTGCAGGAGCTAAGCTTGGTCAAGATGTTCTTCGGTGCA 2731
Query 2159 ACAATGTCTCTGAGATTGTCGCCGTCAATCATCAGACAGGTTTACCGGCTAGATGCATGA 2218
|||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 2732 ACAATGTCTCTGAGATCGTCGCTGTCGATCATCAAACAGGTTTACCGGCTAGATGCATGA 2791
Query 2219 AATTCTGA 2226
||||||||
Sbjct 2792 AATTCTGA 2799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91416588000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5