BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60720.1 Length=2340 Score E Sequences producing significant alignments: (Bits) Value Ahg496220 jgi|Araly1|496220|fgenesh2_kg.8__2036__AT5G60720.1 3533 0.0 > Ahg496220 jgi|Araly1|496220|fgenesh2_kg.8__2036__AT5G60720.1 Length=2303 Score = 3533 bits (1913), Expect = 0.0 Identities = 2121/2221 (95%), Gaps = 16/2221 (1%) Strand=Plus/Plus Query 4 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCAAAG-CTAATATATCTCAATATGTC 62 ||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| Sbjct 1 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCCAAGCCAAATATATTTCAATATGTC 60 Query 63 TCATTCTTCTTCTGTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTTAACCACTC 122 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 61 TCATTCTTCTTCTCTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTCAACCATTC 120 Query 123 TTTCCGGCTCTGTCTCACTGCTCCATCTTCCTCTCGCTGGTCTAGTCCCGACGATTACTG 182 | ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 121 TCTCCGGTTCTGTCTCACTGCTCCATCTTCGTCTCGCTGGTCTAGTCCCGACGACTACTG 180 Query 183 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 240 Query 243 TCATAGTGTTAGGACGAAAAAGCCAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 302 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 TCATAGTGTTAGGACGAAAAAGCTAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 300 Query 303 GGTGTGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 362 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGTATGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 360 Query 363 AGTCCAAAAACATCAActtccttcttcttcctcttcccttactcttcctgcttctctccc 422 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCATTACTCTTCCTGCTTCTCTCCC 420 Query 423 tccCAAGATGAAGGAACTTATAACGGAACTATCAATCGTAGAAGGAGAAATCTCAAGACT 482 |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct 421 TCCCAAGATGAAGGAACTAATAACGGAACTATCGATAGTAGAAGGAGAAATCTCAAGACT 480 Query 483 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 540 Query 543 ACAAGCTACAAC-AAGTTCTTCAAGACGAGCATGGCAAACTAGTGAGACTTACAAGGATG 601 |||||| ||||| || ||| |||||||||||||||||||||||||||| |||||| |||| Sbjct 541 ACAAGCAACAACGAA-TTCATCAAGACGAGCATGGCAAACTAGTGAGAGTTACAATGATG 599 Query 602 ACAACATAAACCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTCCCACCTCCAA 661 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 600 ACAACATAACCCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTATCACCTCCAA 659 Query 662 GCCCTATGGTAAACAAAGGCATGATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 721 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 660 GCCCTATGGTAAACAAAGGCATAATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 719 Query 722 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTGCATTTCATCAACAAAGCTA 781 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 720 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTACATTTCATCAACAAAGCTA 779 Query 782 TAAAAGGTGATTACGCGATTGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAGTTGTTG 841 |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 780 TAAAAGGTGATTACGCGACAGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAATCGTTG 839 Query 842 AGAAGGAAAATCATCGGTCGGTCCAACATGAAAATAAGGTGCAAGAGAATATGAAAATGA 901 |||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||| Sbjct 840 AGAAGGAAAATCATAGGTTGGTACAACATGAAAATAAGTTGCAAGAGAATATGAAAATGA 899 Query 902 AAAAGATTAGGACGATGAAATCGCCTTCGCCTCTACGTGAACCTAGATATACCTCTCCTA 961 |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| Sbjct 900 AAAAGATTAGGACGATGAAATCACCATCGCCTCTACGTGAACCTAGATATTCCTCTCCTA 959 Query 962 ATAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGCATCACTAGACATTCCACCAAAAT 1021 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 960 ACAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGTATCACTAGACATTCCACCAAAAT 1019 Query 1022 CTTTATCAAGCACAATCTTGATGGAAGACGGCCAAAACATTCAGAAGTGGCACCCAAACA 1081 || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1020 CTCTATCAAGCACAATCTTGATGGAAGATGGCCAAAACATACAGAAGTGGCACCCAAACA 1079 Query 1082 AGCTCGCCGAGAACATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1141 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AGCTCGCCGAGAGCATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1139 Query 1142 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCCACTAATTTCTCTTTGA 1201 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1140 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCAACTAATTTCTCTTTGA 1199 Query 1202 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCAAAATCGATGAATCTTG 1261 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1200 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCTAAATCCATGAATCTTA 1259 Query 1262 TGTCTTATAAGGAATCAAGACAACAAGATCCTTATGGAATATTTGATGTAGAATCATCTT 1321 |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1260 TGTCTTCTAAGGAATCAAGACAACAAGATCCTTACGGAATATTTGATGTAGAAGCATCTT 1319 Query 1322 TGGCAAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1381 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TGGCTAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1379 Query 1382 CCAAGTGCATTTCAAGCTCTAGCTCGGTTTCTTTAATCCAGAAACTCAGGGTACTGATGA 1441 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1380 CCAAGTGCATTTCAAGCTCTAGCTCCGTTTCTTTAATCCAGAAACTCAGGGTATTGATGA 1439 Query 1442 ACAATCTTGAGACTGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1501 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 ACAATCTTGAGACCGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1499 Query 1502 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1559 Query 1562 CTGAGAGATTGCAATCTCTTGTATACAATAAGGCTACAATGAATGTCGGAGGCAAAAACA 1621 |||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 1560 CTGAGAAATTGCAATCTCTTGTTTACAATAAGGCTACAATGAATGTTGGGGGCAAAAACA 1619 Query 1622 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTACATCTTCTACAATGACTC 1681 ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || Sbjct 1620 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTGCAACTTCTACCATGAGTC 1679 Query 1682 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACGGATCCTA 1741 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1680 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACTGATCCTA 1739 Query 1742 ACATCACATTTGCTCTATCTTGTGGAACTCGATCTTCTCCTGCAGTGAGGATATACACTG 1801 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1740 ACATCACATTTGCTCTCTCTTGCGGAACTCGATCTTCTCCTGCGGTGAGGATATACACTG 1799 Query 1802 GAGAAGGAGTGACAACGGAGCTAGAGAAATCAAAGCTGGAGTATCTGCAAGCCTCGCTGG 1861 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1800 GAGAAGGAGTGACAACGGAGCTAGAGAAATCGAAGCTGGAGTATCTGCAAGCCTCGGTGG 1859 Query 1862 TGGTTACCGCGGCTAAACGGATAGGCTTGCCGGAACTTCTCCTGAAACATGCCACCGATT 1921 ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 1860 TGGTTACGGCGGCTAAACGGATAGGCTTGCCAGAACTTCTCCTGAAACACGCCGCCGATT 1919 Query 1922 TCGTGGTGCTC-ACGGCGGATGGTGGT--AC-T---GGAGAGATGGAGCAGTTAGGATCT 1974 ||||||||| | | || |||||||||| | | ||||||||||||||||||||| || Sbjct 1920 TCGTGGTGC-CGAGGGTGGATGGTGGTGGAAGTATTGGAGAGATGGAGCAGTTAGGACCT 1978 Query 1975 TTGGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTGAGAAAATCAATGGTG 2034 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1979 CTAGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTAAGAAAATCAATGGTG 2038 Query 2035 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCGTCCTCCTCCGCCGT--T-GAGAAG 2091 ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||| Sbjct 2039 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCTTCCTCCTCGGCCGTCGTTGAGAAG 2098 Query 2092 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTACTACTACTAATTTT 2151 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 2099 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTATTACTACTCATTTT 2158 Query 2152 TTATTCGTTTATTTGTGAAAATGTTGTGTTT-CAAATAAAAATATCAAAATTTGTTTGtt 2210 | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 2159 T-ATTCGTTTATTTGTGAAAATGTTGTGTTTTCAAATAAAAATATCAAAGTTTGTATGTT 2217 Query 2211 t 2211 | Sbjct 2218 T 2218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88140826930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5