BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60720.1
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496220 jgi|Araly1|496220|fgenesh2_kg.8__2036__AT5G60720.1 3533 0.0
> Ahg496220 jgi|Araly1|496220|fgenesh2_kg.8__2036__AT5G60720.1
Length=2303
Score = 3533 bits (1913), Expect = 0.0
Identities = 2121/2221 (95%), Gaps = 16/2221 (1%)
Strand=Plus/Plus
Query 4 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCAAAG-CTAATATATCTCAATATGTC 62
||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||
Sbjct 1 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCCAAGCCAAATATATTTCAATATGTC 60
Query 63 TCATTCTTCTTCTGTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTTAACCACTC 122
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 61 TCATTCTTCTTCTCTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTCAACCATTC 120
Query 123 TTTCCGGCTCTGTCTCACTGCTCCATCTTCCTCTCGCTGGTCTAGTCCCGACGATTACTG 182
| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 TCTCCGGTTCTGTCTCACTGCTCCATCTTCGTCTCGCTGGTCTAGTCCCGACGACTACTG 180
Query 183 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 240
Query 243 TCATAGTGTTAGGACGAAAAAGCCAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 302
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCATAGTGTTAGGACGAAAAAGCTAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 300
Query 303 GGTGTGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTATGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 360
Query 363 AGTCCAAAAACATCAActtccttcttcttcctcttcccttactcttcctgcttctctccc 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCATTACTCTTCCTGCTTCTCTCCC 420
Query 423 tccCAAGATGAAGGAACTTATAACGGAACTATCAATCGTAGAAGGAGAAATCTCAAGACT 482
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 421 TCCCAAGATGAAGGAACTAATAACGGAACTATCGATAGTAGAAGGAGAAATCTCAAGACT 480
Query 483 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 540
Query 543 ACAAGCTACAAC-AAGTTCTTCAAGACGAGCATGGCAAACTAGTGAGACTTACAAGGATG 601
|||||| ||||| || ||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 541 ACAAGCAACAACGAA-TTCATCAAGACGAGCATGGCAAACTAGTGAGAGTTACAATGATG 599
Query 602 ACAACATAAACCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTCCCACCTCCAA 661
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 ACAACATAACCCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTATCACCTCCAA 659
Query 662 GCCCTATGGTAAACAAAGGCATGATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 721
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 GCCCTATGGTAAACAAAGGCATAATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 719
Query 722 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTGCATTTCATCAACAAAGCTA 781
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 720 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTACATTTCATCAACAAAGCTA 779
Query 782 TAAAAGGTGATTACGCGATTGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAGTTGTTG 841
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 780 TAAAAGGTGATTACGCGACAGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAATCGTTG 839
Query 842 AGAAGGAAAATCATCGGTCGGTCCAACATGAAAATAAGGTGCAAGAGAATATGAAAATGA 901
|||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 840 AGAAGGAAAATCATAGGTTGGTACAACATGAAAATAAGTTGCAAGAGAATATGAAAATGA 899
Query 902 AAAAGATTAGGACGATGAAATCGCCTTCGCCTCTACGTGAACCTAGATATACCTCTCCTA 961
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 900 AAAAGATTAGGACGATGAAATCACCATCGCCTCTACGTGAACCTAGATATTCCTCTCCTA 959
Query 962 ATAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGCATCACTAGACATTCCACCAAAAT 1021
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 ACAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGTATCACTAGACATTCCACCAAAAT 1019
Query 1022 CTTTATCAAGCACAATCTTGATGGAAGACGGCCAAAACATTCAGAAGTGGCACCCAAACA 1081
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1020 CTCTATCAAGCACAATCTTGATGGAAGATGGCCAAAACATACAGAAGTGGCACCCAAACA 1079
Query 1082 AGCTCGCCGAGAACATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1141
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCTCGCCGAGAGCATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1139
Query 1142 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCCACTAATTTCTCTTTGA 1201
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1140 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCAACTAATTTCTCTTTGA 1199
Query 1202 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCAAAATCGATGAATCTTG 1261
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1200 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCTAAATCCATGAATCTTA 1259
Query 1262 TGTCTTATAAGGAATCAAGACAACAAGATCCTTATGGAATATTTGATGTAGAATCATCTT 1321
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1260 TGTCTTCTAAGGAATCAAGACAACAAGATCCTTACGGAATATTTGATGTAGAAGCATCTT 1319
Query 1322 TGGCAAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1381
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGGCTAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1379
Query 1382 CCAAGTGCATTTCAAGCTCTAGCTCGGTTTCTTTAATCCAGAAACTCAGGGTACTGATGA 1441
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1380 CCAAGTGCATTTCAAGCTCTAGCTCCGTTTCTTTAATCCAGAAACTCAGGGTATTGATGA 1439
Query 1442 ACAATCTTGAGACTGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACAATCTTGAGACCGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1499
Query 1502 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1559
Query 1562 CTGAGAGATTGCAATCTCTTGTATACAATAAGGCTACAATGAATGTCGGAGGCAAAAACA 1621
|||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1560 CTGAGAAATTGCAATCTCTTGTTTACAATAAGGCTACAATGAATGTTGGGGGCAAAAACA 1619
Query 1622 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTACATCTTCTACAATGACTC 1681
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 1620 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTGCAACTTCTACCATGAGTC 1679
Query 1682 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACGGATCCTA 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1680 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACTGATCCTA 1739
Query 1742 ACATCACATTTGCTCTATCTTGTGGAACTCGATCTTCTCCTGCAGTGAGGATATACACTG 1801
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1740 ACATCACATTTGCTCTCTCTTGCGGAACTCGATCTTCTCCTGCGGTGAGGATATACACTG 1799
Query 1802 GAGAAGGAGTGACAACGGAGCTAGAGAAATCAAAGCTGGAGTATCTGCAAGCCTCGCTGG 1861
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1800 GAGAAGGAGTGACAACGGAGCTAGAGAAATCGAAGCTGGAGTATCTGCAAGCCTCGGTGG 1859
Query 1862 TGGTTACCGCGGCTAAACGGATAGGCTTGCCGGAACTTCTCCTGAAACATGCCACCGATT 1921
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1860 TGGTTACGGCGGCTAAACGGATAGGCTTGCCAGAACTTCTCCTGAAACACGCCGCCGATT 1919
Query 1922 TCGTGGTGCTC-ACGGCGGATGGTGGT--AC-T---GGAGAGATGGAGCAGTTAGGATCT 1974
||||||||| | | || |||||||||| | | ||||||||||||||||||||| ||
Sbjct 1920 TCGTGGTGC-CGAGGGTGGATGGTGGTGGAAGTATTGGAGAGATGGAGCAGTTAGGACCT 1978
Query 1975 TTGGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTGAGAAAATCAATGGTG 2034
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1979 CTAGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTAAGAAAATCAATGGTG 2038
Query 2035 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCGTCCTCCTCCGCCGT--T-GAGAAG 2091
||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||
Sbjct 2039 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCTTCCTCCTCGGCCGTCGTTGAGAAG 2098
Query 2092 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTACTACTACTAATTTT 2151
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2099 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTATTACTACTCATTTT 2158
Query 2152 TTATTCGTTTATTTGTGAAAATGTTGTGTTT-CAAATAAAAATATCAAAATTTGTTTGtt 2210
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 2159 T-ATTCGTTTATTTGTGAAAATGTTGTGTTTTCAAATAAAAATATCAAAGTTTGTATGTT 2217
Query 2211 t 2211
|
Sbjct 2218 T 2218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88140826930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5