BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60730.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496221 jgi|Araly1|496221|fgenesh2_kg.8__2037__AT5G60730.1 2167 0.0
> Ahg496221 jgi|Araly1|496221|fgenesh2_kg.8__2037__AT5G60730.1
Length=1389
Score = 2167 bits (1173), Expect = 0.0
Identities = 1305/1369 (95%), Gaps = 8/1369 (1%)
Strand=Plus/Plus
Query 53 CTTCGATTATCCGGGAAAAGTTCATCCCTTTTTTCTATTCTGAATTCTTCAATGGCGGCT 112
|||| |||| |||||||||||| |||| | |||| |||||||||| ||||||||| ||
Sbjct 24 CTTCCATTAACCGGGAAAAGTTGTTCCC-GTCTTCTCTTCTGAATTCGTCAATGGCGTCT 82
Query 113 TTACTTCTCCTCAATCGTGTTTCTCGAAGTACTAGCTCAATCTCTCTCCACCGGGTCGCA 172
|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 83 TTACTTCTTCTCAATCGTGTTTCGCGAACTACTAGCTCAATCTCTCTCCACCGGGTCGCA 142
Query 173 GGAACTCTGGGTTTCAATTCCT-TCAATGCTCAAATTCACGGTGACAGAATCTCCGGAAC 231
||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 143 GGAGCTCTGGGTTTCAATT-CTCTCAATGCTCAAATTCACGGTGACAGAATCTCTGGAAC 201
Query 232 ACTCTTTCGAGTGAGATCATTAGCTACTCTTGCTGAAGGAGCTTCTCATTTTAATGAGAT 291
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 202 ACTCTTTCGAGTGAGATCATTAGCTACTCTTGCTGAAGGAGCTTCTCGTTTTGATGAGAT 261
Query 292 GGTATCTGTGAATCAGCGGAAGTATTATCTTCTGGGTGGTAAAGGAGGTGTTGGGAAAAC 351
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 262 GGTATCTGTGAATCAGCGGAAGTTTTATCTTCTGGGTGGTAAAGGAGGTGTCGGGAAAAC 321
Query 352 GAGCTGTGCTGCTTCTCTTGCGGTTAAGTTTGCTAGCCACGGTCATCCTACCATTGTGGT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GAGCTGTGCTGCTTCTCTTGCGGTTAAGTTTGCTAGCCACGGTCATCCTACCATTGTGGT 381
Query 412 TTCTACTGACCCTGCTCACTCCTTGAGCGATTCTTTTTCCCAGGACTTGTCAGGAGGAGT 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTCAACTGACCCTGCTCACTCCTTGAGCGATTCTTTTTCCCAGGACTTGTCAGGAGGAGT 441
Query 472 CCTAAAGCCCGTTCAAGGTGTTGATTCTCCACTTCTTGCTCTTGAGATCACACCTGAGAT 531
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 CCTAAAGCCTGTTCAAGGTGTTGATTCTCCACTTCTTGCTCTTGAGATAACACCTGAGAT 501
Query 532 AATGAAGGACGAGATAAAACGTCAGACGGGCGATAAAAGTGTGAAAAATATGATGGATAG 591
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 502 AATGAAGGACGAGATTAAACGTCAGACGGGCGATAAAAGTGTTAAAAATATGATGGATAG 561
Query 592 CATGGGGCTCGGAATGTTTGCCGGCGAGTTAGGGGACTTAAATCTTGAAGATATGCTCAA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CATGGGGCTCGGAATGTTTGCCGGCGAGTTAGGGGACTTAAATCTTGAAGATATGCTCAA 621
Query 652 CGCTGCCTCTCCTGGTATTGACGAAATAGCAGCTATTTCCAAGGTTCTTCAATTTATGGA 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CGCTGCCTCGCCTGGTATTGACGAAATAGCAGCTATTTCCAAGGTTCTTCAATTTATGGA 681
Query 712 GGCACCAGAATACAGTAGGTTCACTCGTATAGTTTTTGATACTGCTCCCACGGGGCATAC 771
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 682 GGCACCAGAATACAGTAGGTTCACTCGTATAGTTTTTGACACTGCTCCCACGGGACATAC 741
Query 772 TCTGCGGCTTCTTTCCCTCCCAGACTTCTATGATTCATCCATTAGCAAAATAACTAAGCT 831
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 742 TCTGCGGCTTCTTTCCCTCCCAGACTTCTATGATTCATCCATAAGCAAAATAACTAAGCT 801
Query 832 CAAGAAGAAAATCACTGCAGCAGCTTCAGCCTTTAAGTTGGTCTTTGGCAAAAAAGAGAT 891
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 802 CAAGAAGAAGATCACTGCAGCAGCTTCAGCCTTTAAGTCGGTCTTTGGCAAAAAAGAGAT 861
Query 892 ACAACAAAAAGAACTTCCTAACGAGTTAGATCAACTGAAAGAGAGGATGGAGAAAGTTCG 951
||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 862 ACAACAACAAGAACTTCCTAACGAGTTAGACCAACTGAAAGAGAGAATGGAGAAAGTTCG 921
Query 952 AAATGTTTTCCGTGATGTGGACACTACCGAGTTTGTTATTGTAACCATCCCAACGGTTAT 1011
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 922 AAATGTTTTCCGTGATGTGAACACTACTGAGTTTGTTATTGTAACCATCCCAACGGTTAT 981
Query 1012 GGCAATAAACGAGTCTTCAAGGTTACATGCATCTTTAAGAAAAGAAAATGTGCCAGTCCA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGCAATAAACGAGTCTTCAAGGTTACATGCATCTTTAAGAAAAGAAAATGTGCCAGTCCA 1041
Query 1072 CCGGCTTATTGTTAATCAGCTTCTACCTCAATCTGAATCCGATTGCAAATTTTGCTCAAT 1131
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1042 CAGGCTTATTGTTAATCAGCTTCTACCTCAATCTGAATCCGATTGCAAATTTTGCTCCAT 1101
Query 1132 AAGACGAAAGGAACAAACGCGTGTGCTTGGACTTATTCAGAATGATACAGAACTTTCGGG 1191
|||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 1102 GAGACGAAAGGAACAAACGCGAGTTCTTGGACTTATTCAGAACGATACAGAACTTTCTGG 1161
Query 1192 GTTAAAATTGATCCAATCGCCATTGCTAGACGCAGAGATAAGAGGGGTTCCCGCACTTAA 1251
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1162 GTTAAAATTGATCCAATCCCCATTGCTAGACGCAGAAATAAGAGGGGTTCCCGCACTTAA 1221
Query 1252 GTTCATGGGTGATCTCATTTGGAAATAAGAttt-t--tttttttCAACTTTCGTTTCCAG 1308
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1222 GTTCATGGGTGATCTCATTTGGAAATAAGAAAAATAATTTTTTTCAACTTTCGTTTCCAG 1281
Query 1309 TGCATAACAATAAGTTAAATTCTTTTGCTGTCCTAAGATCTAAAAAGTCTTGCTGATGAG 1368
|||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||
Sbjct 1282 TGCATAACAATAAGTTAAATTCTTCTGCTGTCCTAAGATCTGAAAA-TGTTGCTGATGAA 1340
Query 1369 ATTAAA-CAAAATACCAATGTTATTAACTTTAAGCAAAGAAAGTAATGG 1416
| ||| |||| || |||||||||||| ||||||| |||||||||||||
Sbjct 1341 AGGAAAACAAATTAACAATGTTATTAATTTTAAGCCAAGAAAGTAATGG 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5