BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60750.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496223 jgi|Araly1|496223|fgenesh2_kg.8__2039__AT5G60750.1 2078 0.0
> Ahg496223 jgi|Araly1|496223|fgenesh2_kg.8__2039__AT5G60750.1
Length=1364
Score = 2078 bits (1125), Expect = 0.0
Identities = 1298/1376 (94%), Gaps = 33/1376 (2%)
Strand=Plus/Plus
Query 8 GTCACGAAAACCCCCAAAT-C-C-A----CAGATTAATTAGGGTTTTCGATTTCTCTGAT 60
||||||||||||||||||| | | | ||||||||||||||||||||||||| ||||
Sbjct 1 GTCACGAAAACCCCCAAATCCTCAATTTTGAGATTAATTAGGGTTTTCGATTTCTGTGAT 60
Query 61 GAAACTGAGAAGAATCTCTCATTAGGG-T-TC--TTCATTCTTCAGAGGGATTTCTCA-- 114
|||||| |||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct 61 GAAACTAAGAAGAATCTCTCATTAGGGTTCTCAATTC-TTCTTCAGAGGGATTTCTCATC 119
Query 115 TATCTCTCTCATTGAGCTTGCTAAAGCTGAAATCTGAGTTTGA-AATTGGAATTCAGATT 173
| ||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 120 TCTCTCTCTCATTGAGCGTGCT-AAGCTGAAATCTGAGTTTGATAATTGGAACTCAGA-T 177
Query 174 CCCATCCCATGTTGACCTCTTCTTGCTCTTCTTCGTCTCTCC-TCTGCCATCGCCCAGCT 232
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 178 ----TCCCATGTTGACCTCTCCTTGCTCTTCTTCGTCTCTCCTTC-GCCATCGCCCAGCT 232
Query 233 CTCTCTAGTTCGCGTTCCAAGTTTAGGGTTCCTTGTCGAACTGTTTTCTCTCCTGCTCTT 292
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 233 CTCTCTAGTTCGCGTTCCAAGTTTAGGGTTCCTCGTCGAACTGTCTTCTCTCCTGCTCTT 292
Query 293 ACCAAGATTTCCCCTTTAACTGCTTCTTCACCTTCTAAGTCCGCCAAGCATAAATGGAAG 352
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 293 ACCAAGATTTCCCCTTTAACTGCTTCTTCACCTTCTAAGTCCGCCAAGCACAAATGGAAG 352
Query 353 ATTTTGTGTTTTAGAAATGAAGATTCTGCTCCCGAGAATCCGGAGCATTTTGTGCCTGAG 412
||||| || ||||||||||| ||||||||||| |||||| |||||||| | |||||||||
Sbjct 353 ATTTTTTGCTTTAGAAATGAGGATTCTGCTCCTGAGAATTCGGAGCATCTCGTGCCTGAG 412
Query 413 GAATTAGTTAAGCCAGATCAAGATTCTCCATGTACAGATAAAACAGATTGGAAGGCAACT 472
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 413 GAATTAGTTAAGCCAGATCAAGATTCTCCATGTACAGATAAAAAAGATTGGAAGGCAACT 472
Query 473 TTTCAAAAGGCTGCAGATGCAGTTTTGAAGGCCATTGGGACTCGTTGGAAGGTACCATGG 532
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 473 CTTCAAAAGGCTGCAGATACAGTTTTGAAAGCCATTGGGACTCGTTGGAAGGTACCATGG 532
Query 533 ACTGTCGAGACCATTGTGCAGGTAATGCTTCTGTGGGTAGCCGCTTTCTGGTTCATTGGT 592
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ACAGTCGAGACCATTGTGCAGGTAATGCTTCTGTGGGTAGCCGCTTTCTGGTTCATTGGA 592
Query 593 TCATGGATGATCCCATTCATGGCTCATATATCAGGTTTCCACAAAGAATCCCTAACATTT 652
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 593 TCATGGATGATCCCTTTCATGGCTCATATATCAGGTTTCCATAAAGAATCCCTAACATTT 652
Query 653 AGAGGCCAAGCTTTGTTCAGTCTGATAACCGATGTAACAGAAGGCCTAGCCGGGATTGCT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGAGGCCAAGCTTTGTTCAGTCTGATAACCGATGTAACAGAAGGCCTAGCCGGGATTGCT 712
Query 713 ATCCTCCACCGTTGCCTCTCCATGTTCCGTCCACTTGCAAGTGATTGGTTCCGCTTTACC 772
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 713 ATACTCCACCGTTGCCTCTCCATGTTTCGTCCACTTGCAAGCGATTGGTTCCGCTTTACC 772
Query 773 CTTAAAGGAAACTGGCAACTAGATGTTATCATAGGCTGTTTCATGTTCCCTTTCGTTAAC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTTAAAGGAAACTGGCAACTAGATGTTATCATAGGCTGTTTCATGTTCCCTTTCGTTAAC 832
Query 833 CGGCTCTCCCAATTAAACCTAAACCTCTTGCCACTCCCACCAACCTCAAGTCCAGTCTCA 892
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 833 CGTCTCTCCCAATTAAACCTCAACCTCTTGCCACTCCCACCAACCTCAAGTCCGGTCTCA 892
Query 893 CTCTCAAGTGTCGAGCAGTCTATAATGGCTAGAGACCCTGTGGCAATGGCACTGTATGCA 952
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 893 CTCTCAAGTGTCGAGCAGTCGATAATGGCTAGAGACCCTGTGGCAATGGCACTGTATGCA 952
Query 953 GTTGTAGTATCAATTTGTGCACCGGTTTGGGAAGAGATAGTGTTCAGAGGGTTCTTGTTA 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GTTGTGGTATCAATTTGTGCACCGGTTTGGGAAGAGATAGTGTTCAGAGGGTTCTTGTTA 1012
Query 1013 CCGTCTCTAACTAGGTACATGCCAGTTTGGTGTGCGATTCTTGTGAGTTC-GATTGCATT 1071
|||||||| |||||||||||||| |||||||||||||||||||||||||| | |||| ||
Sbjct 1013 CCGTCTCTGACTAGGTACATGCCGGTTTGGTGTGCGATTCTTGTGAGTTCAG-TTGCGTT 1071
Query 1072 TGCTTTGGCACATTTCAATGTGCAGAGGATGTTACCATTGGTGTTCCTTGGAGTGGTATT 1131
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1072 TGCTTTAGCACATTTCAATGTGCAGAGGATGTTGCCATTGGTGTTCCTTGGAGTGGTTTT 1131
Query 1132 GGGTTTGATATTCGCAAGGTCAAGGAACTTGTTACCTTCAATGCTGTTGCATAGCTTGTG 1191
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 GGGTTTGATATTCGCAAGGTCAAGGAACTTGTTACCTTCAATGCTATTGCATAGCTTGTG 1191
Query 1192 GAACGGCTTTGTATTCATGGAATTGATGCGATGATGA---CTATCTTTTGTAGGTGTCTT 1248
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 GAATGGCTTTGTATTCATGGAATTGATGCGATGATGATGACTATCTTTTGTAGGTGTCTT 1251
Query 1249 GTTTCTTATTCTTCTTGTAATTGATTCAAAGTATGATGTTAGCTTTT-AtttttttATAA 1307
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
Sbjct 1252 GTTTCTTATTCTTCTTGTAATTGATTCAAATTATGATTTTAGCTTTTTATTTTTTTA-A- 1309
Query 1308 TAAATGGACAGTTCAATTGTACaaagataaaaccaaaaaaggtcaaaaag-aaaTT 1362
|||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||
Sbjct 1310 TAAATGGACAGTTCAATTGTACAAAGATAAAAACAAAAATGGT-AAAAAGGAAATT 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5