BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60760.1
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496224 jgi|Araly1|496224|fgenesh2_kg.8__2040__AT5G60760.1 3795 0.0
Ahg323187 jgi|Araly1|323187|fgenesh1_pm.C_scaffold_5000731 1155 0.0
> Ahg496224 jgi|Araly1|496224|fgenesh2_kg.8__2040__AT5G60760.1
Length=2603
Score = 3795 bits (2055), Expect = 0.0
Identities = 2451/2632 (93%), Gaps = 67/2632 (3%)
Strand=Plus/Plus
Query 1 ATAACAACAAGTGATACATTCTCAATCTCTGATTCTTCTGATTCTCAAAACCCTAATTT- 59
|||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1 ATAACAACAAGTGATACATTCTCAATCTCTGA---TTCT-A-----AAAACCCTAATTTC 51
Query 60 -CCACACGCTTTCTATCATTTCCACCCAAAAGAGAGAGATATGACGGAGACGACGAAGGT 118
|||||||| |||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 52 CCCACACGC-TTCTTTAATTTCCACCCTAAAGAGAGAGATATGACGGAGACGACGAAGGT 110
Query 119 GATGTACATAGTGGTGGTCGATGGAACG--GATA---CGGCGGAGACGGTGGAAGAAGAC 173
|||||| |||||||||||||| || || |||| |||||| ||||||||||||||||
Sbjct 111 GATGTATATAGTGGTGGTCGACGG--CGTTGATACGGCGGCGGCGACGGTGGAAGAAGAC 168
Query 174 GGGACCGGGACTTGGAAAGATTCGTTTAGGTATACACGTCCTGTTTTGCAGAGTACTCTT 233
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 169 GGGACCGGGAATTGGAAAGATTCGTTTAGGTATACGCGTCCTGTTTTGCAGAGTACTCTT 228
Query 234 CAGCTTATGGGATGCAAAGCCCGTCACGCCTTCAAGATTAGCCGCAGGGTGTTTGAGTTA 293
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 229 CAGCTTATGGGATGCAAAGCTCGTCATGCCTTCAAGATTAGCCGCAGGGTTTTTGAGTTA 288
Query 294 ATAAGAAGTGAGGGATCTTTAATCCTTTCTCCCTCGCTTTCGCCCTCGCATAGTAAAGAA 353
||||||||||||||||| |||||||||||||| || ||||||||| |||||||| |||||
Sbjct 289 ATAAGAAGTGAGGGATCCTTAATCCTTTCTCCATCTCTTTCGCCCACGCATAGTGAAGAA 348
Query 354 TCTGAATTTCAGAAGACAGGTGATGCTTCAGCTTGTGCTAATGTAGAAAAGGCTAACAAA 413
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 349 TCTGAATTTCAGAAGAGAGGTGATACTTCAGCTTGTGCTAATGTAGAAAAGGCTAACAAA 408
Query 414 GTTAACAGTTTGGCTACTGATGATGTTGATAAGAGTAAAAGTAAGCCGTTTGAGGTGTAC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 GTTAACAGTTTGGCTACTGATGATGTTGATAAGAGTAAAAGTAAGCCGTTTGAAGTGTAC 468
Query 474 AAAAGGCGAACAACCGTTGTTGTTTCTCGTGAAATATTTGTAAACGTTGTCTGTGATGCC 533
|||||||||||||| ||||||||||| || || ||||| || |||||||||||||||||
Sbjct 469 AAAAGGCGAACAACGGTTGTTGTTTCGCGGGATATATTCGTTAACGTTGTCTGTGATGCA 528
Query 534 CTGGCTGAGTACAAGTATGTGGGTCATGACCAAAGGGCAGACTTGATTCTGTCGTGCAGA 593
||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 529 TTGGCTGAATATAAGTATGTGGGTCATGACCAAAGGGCAGACTTGATTCTGGCGTGCAGA 588
Query 594 ATCCGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAA 653
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 589 ATCCGAGAAAGGAAAGAATCTGTGACTGTTCTGCTGTGCGGTACTAGTGGCTGTGGCAAA 648
Query 654 TCTACACTCTCCGCACTTCTGGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGAC 713
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCTACACTCTCCGCACTTTTGGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGAC 708
Query 714 TCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCT 768
Query 774 TCAACATACCATGCTGGAGAGTACCTTGACCCTGTGGCAGTTGCTGAGTCAAAAGCCAGA 833
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 769 TCAACATACCATGCTGGAGAGTACCTTGACCCCGTGGCAGTTGCTGAGTCAAAAGCCAAA 828
Query 834 AGAAGAAGAGCCaaaaaaaTGGATAGTATTGAGGACGAAAAAGCGAAAGCCTCTGAAGGT 893
|||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 829 AGAAGAAGAGCCAAAAGATTGGATAGTATTGAGAACGAAAAAGCGAAGGCCTCTGAAGGT 888
Query 894 GGGAAGGCTAAGAATACTCAACAGACTGATGTTGGATCAACAA-AAAACACCCCTGTATT 952
| ||||||||| |||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 889 GTGAAGGCTAATAATACTCAACAGACTGATGTTGGATCAA-AATCAACCACCCCTGTATT 947
Query 953 GTTAAGTCCCAAGCAAATGGCTGTAGAAGGATTTAAGGCTCAAAGTGAAATGGTTATTGA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GTTAAGTCCCAAGCAAATGGCTGTAGAAGGATTTAAGGCTCAAAGTGAAATGGTTATTGA 1007
Query 1013 CAATCTCGATAGGCTCATTACCGCATGGGAAGAAAGGAAAGAGTCTGTTATTGTTGAAGG 1072
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1008 CAATCTCGATAGGCTCATTACCGCATGGGAAGAAAAGAAAGAGTCTGTTGTTGTTGAAGG 1067
Query 1073 TGTCCATTTAAGCCTCAACTTTGTGATGGGACTGATGAAAAAGCATCCTTCTATAGTTCC 1132
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1068 TGTCCACTTAAGCCTCAACTTTGTGATGGGACTAATGAAAAAGCATCCTTCGATAGTTCC 1127
Query 1133 TTTCATGGTATACATCGCAAACGAGGAGAAACATTTGGAACGATTTGCAGTTAGAGCTAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TTTCATGGTATACATCGCAAACGAGGAGAAACATTTGGAACGATTTGCAGTTAGAGCTAA 1187
Query 1193 GTACATGACCCTGGACCCAGAGAAAAACAAGTATGTAAAATATATACGTAACATCAGAAC 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GTACATGACCCTGGACCCAGAGAAAAACAAGTATGTAAAATATATACGTAACATCAGAAC 1247
Query 1253 AATACAGGATTA-CTTGTGTAAACGAGCTGACAAACATCTCGTCCCCAAGATAAACAATA 1311
|||||||||||| ||| |||||||||||||||||||| || || ||||||||||||||||
Sbjct 1248 AATACAGGATTACCTT-TGTAAACGAGCTGACAAACACCTAGTTCCCAAGATAAACAATA 1306
Query 1312 CCAATGTCGACAAGAGTGTGGCTGCGATCCACGCTACAGTCTTCAGTTGCCTGCGTAGGC 1371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1307 CCAATGTCGACAAGAGTGTGGCTGCGATCCACGCGACAGTCTTCAGTTGCCTGCGTAGGC 1366
Query 1372 GAGAAGCAGGAGAGCATCTCTATGATGCTACTACAAATACTGTCTCAGTGATTGACGATG 1431
|||||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||
Sbjct 1367 GAGAAGCAGGAGAGCAGCTCTATGATGCTACCACCAATACTGTCTCAGTGATCGATGATG 1426
Query 1432 AGTATAGAAACCAGTGTACAGCTAATTCATTGAGCTCCAAAGGAATGTTTCAGCTGATCC 1491
|||| |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1427 AGTACAGAAACCAGTGTACTGCCAATTCGTTGAGTTCCAAAGGAATGTTTCAGCTGATCC 1486
Query 1492 AAAGAAAAGGTTCTTCTAGGCATCTTATGGCTCTTCTCAATACTGATGGCACTTTCGCAA 1551
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1487 AAAGAAAAGGTTCTTCTCGGCATCTAATGGCTCTTCTCAATACTGATGGCACTTTCGCAA 1546
Query 1552 GAACTTGGCCCGTTACTGGTAAGGTCGATGAGAGTGGAAAGCCAGTCTTTTGTAATGAGA 1611
|||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1547 GAACTTGGCCTGTTAGTGGTAAGGTTGATGAGAGCGGAAAGCCAGTCTTTTGTAATGAGA 1606
Query 1612 TGATTGAAGAAAATGGAATGGAGCACCCGGTCTATGGATACCTACAGAAAGCTGAACCGG 1671
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1607 TGATGGAAGAAAATGGAATGGAGCACCCGGTCTATGGATACCTACAGAAAGCCGAACCAG 1666
Query 1672 TGAATCTTCAGTTTGGTCTATTTGGGATCAGTGCTTGGCCTAGTGATGGAGCCACTAGCC 1731
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1667 TAAATCTTCAGTTTGGTCTATTTGGGATCAGTGCTTGGCCTAGTGATGGAGCCACGAGCC 1726
Query 1732 GCGCTGGGAGTGTAGATGACTGTAAAGCTGACATGGCTGAAACCAGCAGTCGGTATTACT 1791
|||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1727 GCGCCGGGAGTGTAGATGACTCTAGAGCTGACGTGGCTGAAACCAGCAGTCGGTATTACT 1786
Query 1792 CTTCTTGCTGCAGCTCGCCTAGGATGTCTGAAGGAACTTCTAAAGAGCTTAAGGAGGATC 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CTTCTTGCTGCAGCTCGCCTAGGATGTCTGAAGGAACTTCTAAAGAGCTTAAGGAGGATC 1846
Query 1852 AGTCAGTCCATGGGAGCGATGAAGAAGTCGAGGATGATCCTCCCGAGCCAGATACAGATT 1911
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 AGTCGGTGCATGGGAGCGATGAAGAAGTCGAGGATGATCCTCCCGAGCCAGATACAGATT 1906
Query 1912 TTAGCGATGACGATAACAAGCGAGACCATGACGAGGTGGGTTCGGTTGATGAGCAATCAA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TTAGCGATGACGATAACAAGCGAGACCATGACGAGGTGGGTTCGGTTGATGAGCAATCAA 1966
Query 1972 CAAAGTCAGATGAGGAGTACGATGATCTTGCTATGGAAGACAAAAGCTACTGGACAGATG 2031
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 1967 CAAAGTCAGATGAGGAGTACGATGATCTTGCAATGGAAGACAAAAACTACTGGACGGATG 2026
Query 2032 AAGAGGAAGAGTCACGAGATACGATTGCAATAATGTCTGaaaaaaa-CAACAAGCAAGCA 2090
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2027 ACGAGGAAGAGTCACGAGATACGATTGCAATAATGTCTGAAAAAAAACA-CAAGCAAGCA 2085
Query 2091 ACAAAAGAAGACAAGTACATACAGAACTTAGACCTTTTTCTACGGACCGCAAACCAGCAG 2150
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 2086 ACAAAAGAAGACAAGTACATACAAAACTTAGACCTTTTTCTGCGGACCGCGAACCAGCAG 2145
Query 2151 CTTGTCGAGCCACTTCAGCTATGTGCATCACTGCTCACATGCGAGAATGGGAACACAAGA 2210
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2146 CTTGTCGAGCCGCTTCAGCTATGCGCATCACTGCTCACATGCGAGAACGGGAACACAAGA 2205
Query 2211 CTCTGGTTGGGTAAAGAAAAGATGAGGAAACGTTCTTTAAGCATCTCGGCCATTGGCAAA 2270
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2206 CTCTGGTTGGGTAAAGAAAAGATGAGGAAACGTTCTCTAAGCATCTCGGCCATTGGAAAA 2265
Query 2271 CATGGGTCGGGTTTGGGTGATGCGATTCTCTTGGGTGCCCCATGAGGCCAT-GATCTT-- 2327
||||||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 2266 CATGGGTCGGGTTTGGGTGATGCGATTCTCTTGGGTGCCCCATGAT-CTTTTGCT-TTAA 2323
Query 2328 TTACTTTAGTTTGATATTTCTCTGGTGTAGTCttttttttATT------TCTTGATAAAG 2381
|| ||| ||||||||||||||||||| |||||| |||||| || |||||||||||
Sbjct 2324 TTCCTT-AGTTTGATATTTCTCTGGTTTAGTCTCTTTTTT-TTCCCCCCTCTTGATAAAG 2381
Query 2382 TATTCTGGTTCTGGTCTTTAGTTTAAGTTTTCtgtgtgtgtatgtgtgactgtgtgAATA 2441
||||||||| | |||||||||||||||||| ||||||| ||||| |||||||| |||
Sbjct 2382 CATTCTGGTTTTAGTCTTTAGTTTAAGTTTTATGTGTGT--ATGTG--ACTGTGTGTATA 2437
Query 2442 GTCTTAACT-----T-GCACAAATTTGGGGGTTTATAAAGTGCTTCGttttctttt-ctt 2494
||||||||| | |||||||||||||||| |||||||||||| ||||| |||| |||
Sbjct 2438 GTCTTAACTCGAACTTGCACAAATTTGGGGGTCTATAAAGTGCTT-GTTTTTTTTTTCTT 2496
Query 2495 ttt-tgatttaaggctt--ttcttttcttcGA-CCTCAAATGTAAATACT-T-C---AAT 2545
||| | ||||| | || || | ||| || || |||||||||||||| | | |||
Sbjct 2497 TTTCTT-TTTAATGATTCATTATAA-CTT-GATCC-CAAATGTAAATACTGTACTTCAAT 2552
Query 2546 ATTAACATCTAA-GACTCCAGTTTA-AA-TTTCTATATAATTGAGCGTTTGC 2594
||||||| | | |||||||||||| || |||||| |||||||||||||||
Sbjct 2553 CTTAACAT-TGACGACTCCAGTTTATAAATTTCTACGTAATTGAGCGTTTGC 2603
> Ahg323187 jgi|Araly1|323187|fgenesh1_pm.C_scaffold_5000731
Length=2157
Score = 1155 bits (625), Expect = 0.0
Identities = 1510/1914 (79%), Gaps = 154/1914 (8%)
Strand=Plus/Plus
Query 186 TGGA-AAGATTCGTTTAGGTATACACGTCCTGTTTTGCAGAGTACTCTTCAGCTTATGGG 244
|||| | ||||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 72 TGGAGATGATTCGTTTCGTTACACGCGTCCTGTTTTGCAGAGTACTCTTCAGCTTATGGG 131
Query 245 ATGCAAAGCCCGTCACGCCTTCAAGATTAGCCGCAGGGTGTTTGAGTTAATAAGAAGTGA 304
|||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 132 TTGCAAAGCTCGTCACGCCTTCAAGATCAGCCAAAGGGTTTTTGAGTTAATAAGAAGCGA 191
Query 305 GGGATCTTTAATCCTTTCTCCCTCGCTTTCGCCCTCGCATAGTAAAGAATCTGAATTTCA 364
||| || | || | | || || || | || | || ||| |||||||| |
Sbjct 192 GGG-------AT-C-TTGT-AATAGC--TCACCAGAGAATGGGAAGGAAACTGAATTT-A 238
Query 365 -GAA-GACAGGTGATGCTTCAGCTTGTGCTAATGTAGAAAAGGC-TAACAAAGTTAACAG 421
|| || || || || |||| |||||| | | | || ||| | |||| ||| |
Sbjct 239 CTAAGGA-AGTTGGTGGTTCAACTTGTG-T-A-G-AG-AAA--CTTAAC--TGTT---TG 285
Query 422 TTTGGCT-ACTGA---TGATGTTGATAAGAGTAAAAGTAAGCCGTTTGAGGTGTACAAAA 477
|| ||| | ||| ||||||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 286 GTT-GCTGA-TGATGTTGATGTTGACAAGAATAAAAGTAAACCGTTTGAGATGTACAAAA 343
Query 478 GGCGAACAACCGTTGTTGTTTCTCGTGAAATATT-TGTAAACGTTGTCTGTGATGCCCTG 536
|||| ||||| ||||||||||| || |||||||| | | | ||||| ||||||||||||
Sbjct 344 GGCGGACAACTGTTGTTGTTTCACGGGAAATATTCT-TGGATGTTGTGTGTGATGCCCTG 402
Query 537 GCTGAGTACAAGTATGTGGGTCATGACCAAAGGGCAGACTTGATTCTGTCGTGCAGAATC 596
|||||||| ||||| || |||| |||||||||||||| ||||||||| | |||||||||
Sbjct 403 GCTGAGTATAAGTACGTTGGTCGCGACCAAAGGGCAGATTTGATTCTGGCATGCAGAATC 462
Query 597 CGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAATCT 656
|||||||||||||||||||| |||||| | || || || || ||||||||||| ||||||
Sbjct 463 CGAGAAAGGAAAGAATCTGTAACTGTTTTGCTCTGTGGCACCAGTGGCTGTGGTAAATCT 522
Query 657 ACACTCTCCGCACTT-CTGGG-AAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACT 714
||| | || ||| || ||||| || ||||| |||||||| || ||||| ||||| ||||
Sbjct 523 ACATTGTCTGCA-TTGCTGGGTAA-CAGGCTGGGGATTACGACTGTGGTATCAACTGACT 580
Query 715 CAATCCGTCACATGATGAGGAG-TTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCT 773
|||| | |||||||||||||| ||| | |||||| ||||||||||||||||| ||||||
Sbjct 581 CAATAAGGCACATGATGAGGAGCTTT-GCTGATGAGAAGCAGAATCCTTTGCTGTGGGCT 639
Query 774 TCAACATACCATGCTGGAGAGTACCTTGACCCTGTGGCAGTTGCTGAGTCAAAAGCCAGA 833
||||||||||||||| | ||| | | | ||| || | || || | || || | |
Sbjct 640 TCAACATACCATGCT-G-GAG-A--GT-A-CCT-TGAC-CCTG-TG-G-CAGTAG-CTG- 685
Query 834 AGAAGAAGAGCCaaaaaaaTGGATAGTATTGAGGACGAAAAAG-CGAAAGCCTCT-GAAG 891
|| || |||| |||| || | | | | | |||||| ||||| |||| | ||
Sbjct 686 AG-TCAAAAGCC---AAAA--GA-A--A---A-G-CCAAAAAGTTGAAAGGCTCTCG-AG 730
Query 892 GTGGGAAGGCTAAGAATACTCAACAGACTGATGTTGGATC-AACAAAAAACACCCCTGTA 950
|| | || | ||||| ||| |||| |||| |||||| ||| |||| ||| |
Sbjct 731 GT-GTAA--ATTCCAATACCCAAAAGACGGATGCTGGATCAAAC-TCTGGCACCACTG-A 785
Query 951 -TTGTTAAGTCCCAAGCAAATGGCTGTAGAAGGATTTAAGGCTCAAAGTGAAATGGTTAT 1009
| ||||||| ||||| |||||| ||||||| | |||||| |||||||| ||||| ||
Sbjct 786 GCTATTAAGTCATAAGCAGATGGCTATAGAAGGCTATAAGGCACAAAGTGAGATGGTGAT 845
Query 1010 TGACAATCTCGATAGGCTCATTACCGCATGGGAAGAAAGGAAAGAGTCTGTTA-TTGTTG 1068
||||| |||||||||||||||||| | |||||||| ||||||||||| | || | ||||
Sbjct 846 TGACAGTCTCGATAGGCTCATTACAACTTGGGAAGAGAGGAAAGAGTC-GGTAGTCGTTG 904
Query 1069 AAGGTGTCCATTTAAGCCTCAACTTTGTGATGGGACTGATGAAAAAGCATCCTTCTATAG 1128
|||| || || |||||||| ||||||||||||||||||||||||||||| ||||| || |
Sbjct 905 AAGGGGTTCACTTAAGCCTTAACTTTGTGATGGGACTGATGAAAAAGCACCCTTCGATTG 964
Query 1129 TTCCTTTCATGGTATACATCGCAAACGAGGAGAAACATTTGGAACGATTTGCAGTTA-GA 1187
|||| |||||||||||||| || |||||||||||||| |||||||| ||||||| || ||
Sbjct 965 TTCCCTTCATGGTATACATAGCCAACGAGGAGAAACAATTGGAACGGTTTGCAG-TACGA 1023
Query 1188 GCTAAGTACATGACCCTGGACCCAGAGAAA-AACAAGTATGTAAAATATATACGTAACAT 1246
|| ||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1024 GCCAAGTACATGACATTGGACCCAG-CAAAGAATAAGTATGTAAAATATATACGTAACAT 1082
Query 1247 CAGAACAATACAGGATTA-CTTGTGTAAACGAGCTGACAAACATCTCGTCCCCAAGATAA 1305
|||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||
Sbjct 1083 CAGAACAATACAGGATTATCTA-TGTAAACGAGCTGACAAGCATCTCGTTCCTAAGATAA 1141
Query 1306 ACAATACCAATGTCGACAAGAGTGTGGCTGCGATCCACGCTACAGTCTTCAGTTGCCTGC 1365
|||| || |||||||||||||| |||||| | |||||||| || ||||| |||||||||
Sbjct 1142 ACAACACAAATGTCGACAAGAGCGTGGCTACAATCCACGCGACGGTCTTTGGTTGCCTGC 1201
Query 1366 GTAGGCGAGAAGCAGGAGAGCATCTCTATGATGCTACTACAAATACTGTCT-CAGTGATT 1424
|||| || ||| |||||||| | ||||||||| | || |||||||| || | | || ||
Sbjct 1202 GTAGACGTGAAACAGGAGAGAAGCTCTATGATACAACCACAAATACCGT-TGCTGTTATC 1260
Query 1425 GACGATGAGTATAGAAACCAGTGTACAGCTAATTCATTGAGCTCCAAAGGAATGTTTCAG 1484
||||||||| | || ||||| |||||||| |||||||| || ||||| ||||||||||||
Sbjct 1261 GACGATGAGCACAGGAACCAATGTACAGCCAATTCATTAAGTTCCAAGGGAATGTTTCAG 1320
Query 1485 CTGATCCAAAGAAAAGGTTCTTCTAGGCATCT-TATGGCTCTTCT-CAATACTGATGGCA 1542
|||||||||||| |||| || ||||||| | | |||||||||| | |||||||||||| |
Sbjct 1321 CTGATCCAAAGACAAGGCTCCTCTAGGCGT-TATATGGCTCTT-TGCAATACTGATGGTA 1378
Query 1543 CTTTCGCAAGAACTTGGCCCGTTACTGGTAAGGTCGATGAGAGT--GGAAAGCCAGTCTT 1600
|| | || ||||||||||| ||| ||| || ||| ||| | |||| ||| ||| |
Sbjct 1379 CTGTGGCCAGAACTTGGCCTGTT---GGTTCCGTTGATAAGA-TCAGGAA-GCCCGTCGT 1433
Query 1601 TTG-TAATGAGATGATTGAAGAAAATGGAATGGAGCACCCGGTCTATGGATACCTACAGA 1659
| | || ||||||| | | || ||||| ||||| || | | | |||| |
Sbjct 1434 T-GATACTGAGATG---G--GTAA-TGGAACAGAGCA-----TC-A-G----C-TACATA 1474
Query 1660 AAGCTGAACCGGTGAATCTTCAGTTTGGTCTA-TTTGGGATCAGTGCTTGGCCTAGTGAT 1718
|||||||||| |||||||||||||| |||| | ||||||||||| |||||||||||||||
Sbjct 1475 AAGCTGAACCTGTGAATCTTCAGTTCGGTC-ACTTTGGGATCAGCGCTTGGCCTAGTGAT 1533
Query 1719 GGAGCCACTAGCCGCGCTGGGAGTGTAGATGACTGTAA-AGCTGACA-TGGCTGAAACCA 1776
|| || ||||||| || |||||||| ||||| | || ||| || | | ||||||
Sbjct 1534 GGCGCAACTAGCCATGCCGGGAGTGTGGATGAATC-AAGAGCAGATAATAT-TGAAACTG 1591
Query 1777 GCAGTC-GGTATTACTCTTCTTGCTGCAGCTCGCCTA-GGATGTCTGAAGGAACTTCTAA 1834
| || | || ||||||||||||||||||| ||||| | ||| ||||| || |||| ||
Sbjct 1592 GAAG-CAGGCATTACTCTTCTTGCTGCAGTTCGCC-ACGGACATCTGATGGGCCTTCAAA 1649
Query 1835 AGAGCTTAAGGAGGATCAGTCAGTCCATGGGAGCGATGAAGA--A-GT---CGAGGATGA 1888
|||||| | |||||| ||||| || |||||||||||||||| | | ||| |||||
Sbjct 1650 AGAGCTGATGGAGGAGCAGTCTGTAGATGGGAGCGATGAAGATGAAGAAGGCGATGATGA 1709
Query 1889 TCCTCCCGAGCCAGATACAGATTTTAG--CG-ATGACGATAACAA-GC-GA--G-A-CCA 1939
| ||| ||||||||| | ||| || | | || |||||||| | || | | ||
Sbjct 1710 TTTTCCTGAGCCAGATTCTGATGA-AGATCTCA-GA-GATAACAATGATGAACGCAACCG 1766
Query 1940 TGACGAGGTGGGTTCGGTTGATGAGCAATCAACAAAGTCAGATGAGGAGTACGATGATCT 1999
||||||||| || ||||| |||||| |||| |||||||||||||| ||||||||||||||
Sbjct 1767 TGACGAGGTTGGATCGGTGGATGAGGAATCGACAAAGTCAGATGAAGAGTACGATGATCT 1826
Query 2000 TGCTATGGAAGACAAAAGCTACTGGACAGAT---GAAGAGGAAGAGTCACGAGA 2050
|| ||||||||||| || ||||||||||| ||||| |||||||| |||||
Sbjct 1827 GGCAATGGAAGACAAGAGTTACTGGACAGACAACGAAGAAGAAGAGTCTCGAGA 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97968110140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5