BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60770.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917822 jgi|Araly1|917822|Al_scaffold_0008_2573 2497 0.0
Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 425 4e-118
> Ahg917822 jgi|Araly1|917822|Al_scaffold_0008_2573
Length=1593
Score = 2497 bits (1352), Expect = 0.0
Identities = 1497/1569 (95%), Gaps = 2/1569 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGATGGTTTTGGTGAACCGGGAAGCTCAATGCATGGAGTCACCGGCAGAGAACAA 60
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGGCTGATGGTTTTGGTGAACCGGGAAGCTCAATGCACGGAGTCACCGGCCGAGAACAA 60
Query 61 AGCTATGCATTCTCTGTCGAGTCTCCGGCAGTTCCTTCCGACTCATCAGCAAAATTTTCT 120
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 61 AGCTATGCATTCTCCGTCGAGTCTCCGGTGGTTCCTTCCGACACATCAGCAAAATTCTCT 120
Query 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180
Query 181 CATATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240
Query 241 GCTGCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCACAAGACAAGATGTC 300
||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 241 GCTGCTGCTCCTCTTGTCCCCATCATTCGAGATAACCTTAATCTTACCAGACAAGATGTT 300
Query 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCT 360
Query 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGTGCTTTCCTCGTCATGCTCTCTGCTCCA 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGCGCTTTCCTCGTCATGCTCTCTGCTCCG 420
Query 421 ACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCATG 480
||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||
Sbjct 421 ACCGTCTTCTCCATGTCGTTCGTTGCTAATGCCGGCGGGTACATAACGGTGAGGTTCATG 480
Query 481 ATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCAAT 540
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 ATCGGGTTCTGCCTCGCGACTTTCGTGTCATGCCAATACTGGATGAGCACAATGTTCAAT 540
Query 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCAGGGTGGGGGAACATGGGCGGTGGG 600
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCCGGATGGGGGAACATGGGCGGTGGG 600
Query 601 GTCACTCAGTTGCTCATGCCAATGGTCTATGAGATCATCCGACGGTTAGGGTCCACGTCC 660
||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 GTCACGCAGTTGCTCATGCCGATGGTCTATGAAATCATTCGACGGTTAGGGTCCACGTCC 660
Query 661 TTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGGGTGGATGCACATCATCATGGGGATC 720
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTCACGGCGTGGAGGATGGCTTTCTTTGTCCCCGGGTGGATGCACATCATCATGGGGATC 720
Query 721 TTGGTCTTGACTCTAGGGCAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGGTCTTGACTTTAGGACAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780
Query 781 GGTGCAGTTACTAAAGACAAGTTCTCAAAGGTTTTATGGTACGCGATCACGAACTATAGG 840
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 GGTGTTGTTACAAAAGACAAGTTCTCAAAGGTTTTATGGTACGCAATCACGAACTATAGG 840
Query 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACCGATAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACGGATAAC 900
Query 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCATACCGCCGGTATAATC 960
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCACACGGCCGGTATAATC 960
Query 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTATTGGTGGTTGGGCCTCAGAT 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCTCGTCCTATTGGTGGTTGGGCGTCGGAC 1020
Query 1021 ATTGCGGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTGCCGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080
Query 1081 TTAGGCGGTTTCTTCTGCCTATGGCTAGGCCGAGCCACCACGCTCCCGACCGCGGTTGTC 1140
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 TTAGGCGGTTTCTTCTGCCTTTGGCTAGGCCGAGCCACGACGCTCCCGACCGCGGTTGTC 1140
Query 1141 TTCATGATCCTCTTCTCTCTCGGCGCTCAAGCCGCTTGTGGAGCTACCTTTGCTATCATA 1200
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1141 TTCATGATCCTCTTCTCTCTCGGGGCTCAAGCCGCTTGTGGAGCCACCTTTGCCATCATA 1200
Query 1201 CCTTTCATCTCACGCCGCTCCTTAGGGATCATCTCTGGTCTTACTGGAGCTGGTGGAAAC 1260
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1201 CCTTTCATCTCACGCCGGTCCTTAGGCATCATCTCTGGTCTTACTGGAGCCGGAGGAAAC 1260
Query 1261 TTCGGCTCTGGTTTGACCCAACTCGTATTCTTCTCGACCTCAACGTTCTCCACGGAACAA 1320
|||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 1261 TTCGGCTCTGGTTTGACCCAGCTTGTATTCTTCTCGACCTCAACTTTCTCTACGGAACAA 1320
Query 1321 GGGCTGACATGGATGGGGGTGATGATTATGGCGTGTACATTACCCGTCACTTTAGTGCAC 1380
||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1321 GGGCTCACGTGGATGGGGGTGATGATAATGGCGTGTACATTACCCGTCACATTAGTGCAT 1380
Query 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440
Query 1441 GAGTATTATTACATGAAAGAGTGGACAGAGACCG-AGAAGCGAAAGGGTATGCATGAAGG 1499
|||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 1441 GAGTATTACTACATGAAAGAGTGGACAGAG-CCGGAGAAGCAAAAGGGTATGCATGAAGG 1499
Query 1500 GAGTTTGAAGTTCGCCGTGAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAGTTTAAAGTTCGCCGTCAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559
Query 1560 GTCTCCTCC 1568
||||||||
Sbjct 1560 ATCTCCTCC 1568
> Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1
Length=1827
Score = 425 bits (230), Expect = 4e-118
Identities = 895/1208 (74%), Gaps = 78/1208 (6%)
Strand=Plus/Plus
Query 127 GTGGACACCGAACACAAAGCCAAAGTCTTCAAACTC-TTATCCTTTG-AAGCTCCACATA 184
|||||| |||| || | || ||||| ||||||| | ||||| || | || ||||| |
Sbjct 245 GTGGACTCCGAGCATAGGGCAAAAGTGTTCAAAC-CATTATCATTCGCAA-AACCACACA 302
Query 185 TGAGAACTTTCCATCTT-GCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTCGCT 243
||||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 303 TGAGAGCTTTCCA-CTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTCCACCTTCGCA 361
Query 244 GCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCA-CAAGACAAGATGTCGG 302
||||| ||||| |||||| | || | || ||||| || || | ||| || || ||||
Sbjct 362 GCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC-CGACATCGG 420
Query 303 AAATGCTGGTGTTGCTTCTGTCTCTGGCAG-TATCTTCTCTAGGCTTGTTATGGGAGCAG 361
|||||| || || || || || || ||| | || ||||| || || | |||||| || |
Sbjct 421 AAATGCCGGAGTAGCATCAGTTTCCGGC-GCCATTTTCTCAAGACTAGCTATGGGTGCCG 479
Query 362 TTTGTGATCTCCTTGG-GCCACGTTATGGCTGTGCTTTC-CTCGTCATGCTCT-CTGCTC 418
| ||||| || || || | |||||||||| |||||| ||| | ||||| | | ||||
Sbjct 480 TATGTGACCTTCTAGGAG-CACGTTATGGGACCGCTTTCTCTC-TTATGCT-TACAGCTC 536
Query 419 CAACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCA 478
|| |||| ||||||||||| ||||| | || ||| ||| | ||| || | || ||||||
Sbjct 537 CAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCGGTTCA 596
Query 479 TGATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCA 538
||||||| || ||| | || || ||||||||||||||||| |||| |||| |||||||
Sbjct 597 TGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTATGTTCA 656
Query 539 ATGGTCAGATCATAGGTCTAGTGAACGGGA-CAGC-GGCAGGGTGGGGGA-ACATGGGCG 595
||| |||| || || || || ||| ||| || || ||||| ||||| ||||||| |
Sbjct 657 CTGGAAAGATTATCGGACTCGTTAAC-GGATGTGCTGG-AGGGT-GGGGAGACATGGGAG 713
Query 596 GTGGGGTCACTCAGTTGCTCATGCCAATGGTCTAT-GA-GATCATCCGACGGTTA--GG- 650
| || || |||||| | |||||||||||||||| | | | ||||| || | | ||
Sbjct 714 GAGGAGTGACTCAGCTACTCATGCCAATGGTCT-TCAACG-TCATCAAAC--TCACCGGA 769
Query 651 GTCCACGT-CCTTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGG-GTGGATGCACATC 708
| |||| | ||||||| || |||||| | || |||||| ||||||| | | || |||
Sbjct 770 G-CCAC-TCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCAT-TCTTCAGATC 826
Query 709 ATCATGGGGA-TCTTGGTCTTGACTCTAGGGCAAGA-CCTCCCTGATGGTAATAGAAGCA 766
|| ||||| | ||| | || | |||||||| ||||| | |||| |||||||| || |
Sbjct 827 ATTATGGGTATTCTCGTTC-TCACTCTAGGCCAAGATCTTCCC-GATGGTAACCTTAGTA 884
Query 767 CACTCGAGAAGAAAGGTGC-AGTTACTAAAGACAAGTTCTCAAAGGT-TTTATGGTACGC 824
| ||| | |||| ||| | |||| | |||||||| ||||| ||||| ||| |||| |||
Sbjct 885 CTCTCCAAAAGAGTGGT-CAAGTTTCCAAAGACAAATTCTCCAAGGTCTTT-TGGTTCGC 942
Query 825 -GATCACGAACTATAGGACATGGGTTTTCGTGC-TGCTATATGGATACTCCATGGGAGTA 882
| | | ||||| || |||||| | || | | |||| ||||||| || ||||||||
Sbjct 943 TG-TGAAAAACTACAGAACATGGATCTT-ATTCATGCTCTATGGATTTTCTATGGGAGTT 1000
Query 883 GAGCTCACAACCGATAACGTCATCGCT-GAGTACTTTTTCGACAGGTTCCATCTTAAGCT 941
|| | || | | | ||| | || || || ||||| | ||| ||||| | |||| |||
Sbjct 1001 GAATTAACGATCAACAACATTATATCTGGA-TACTTCTACGATAGGTTTAACCTTACGCT 1059
Query 942 TCATACCGCCGGTATAATCGCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCC-TA 1000
||| || |||||||| || || || |||||||||||||||||||||||||||||||| |
Sbjct 1060 TCACACAGCCGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCT- 1118
Query 1001 TTGGTGGTTGGGCCTCAGATATTGCGGCTA-GACGCTTCGGCATGAGAGGCCG-TCTCTG 1058
||||||| | |||||||| | || || | | | |||||||||||||||||| | | ||
Sbjct 1119 TTGGTGGCTATGCCTCAGACGTAGCTGC-ACGGCTCTTCGGCATGAGAGGCCGGT-TATG 1176
Query 1059 GACCCTATGGATCATCCAAACC-TTAGGCGGTTTCTTCTGCC-TATGGCTAGGCCGAGCC 1116
|| | | |||||| | ||||| || || | | |||| || | | ||||| || || ||
Sbjct 1177 GATCTTGTGGATCTTACAAACTGTT-GGAGCTCTCTT-TGGCATCTGGCTTGGTCGTGCT 1234
Query 1117 ACCACGCTCCCGACCGCGGTTGTCTT--C-ATGATCCTCTTCTCTC-TCGGCGCTCAAGC 1172
| | ||||| | || | |||| | ||||| ||||| || | ||||| | |||||
Sbjct 1235 AGTTCACTCCCTATAGC--TA-TCTTAGCCATGATGCTCTTTTC-CATCGGCACACAAGC 1290
Query 1173 CGCTTGTGGAGCTAC-CTTTGCTATCATACCTTTCATCTCACGCCGCTC-CTTAGGGATC 1230
|||||||||||| | ||||| | | ||||| | || ||||| || ||| ||| |
Sbjct 1291 GGCTTGTGGAGCT-CTCTTTGGTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTT-GGGCTT 1348
Query 1231 ATCTCTGGTCTT-ACTGGAGCTGGTGGAAACTTCGGCTCTGGT-TTGACCCAACT-CGTA 1287
|||||||| || ||||| ||||| ||||| || || || ||| || || ||||| | |
Sbjct 1349 ATCTCTGGA-TTGACTGGTGCTGGAGGAAATTTTGGGTCGGGTGTT-ACTCAACTTCTT- 1405
Query 1288 TTCTTCTC 1295
||||||||
Sbjct 1406 TTCTTCTC 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5