BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60770.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg917822 jgi|Araly1|917822|Al_scaffold_0008_2573 2497 0.0 Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 425 4e-118 > Ahg917822 jgi|Araly1|917822|Al_scaffold_0008_2573 Length=1593 Score = 2497 bits (1352), Expect = 0.0 Identities = 1497/1569 (95%), Gaps = 2/1569 (0%) Strand=Plus/Plus Query 1 ATGGCCGATGGTTTTGGTGAACCGGGAAGCTCAATGCATGGAGTCACCGGCAGAGAACAA 60 ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1 ATGGCTGATGGTTTTGGTGAACCGGGAAGCTCAATGCACGGAGTCACCGGCCGAGAACAA 60 Query 61 AGCTATGCATTCTCTGTCGAGTCTCCGGCAGTTCCTTCCGACTCATCAGCAAAATTTTCT 120 |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 61 AGCTATGCATTCTCCGTCGAGTCTCCGGTGGTTCCTTCCGACACATCAGCAAAATTCTCT 120 Query 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180 Query 181 CATATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CACATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240 Query 241 GCTGCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCACAAGACAAGATGTC 300 ||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| Sbjct 241 GCTGCTGCTCCTCTTGTCCCCATCATTCGAGATAACCTTAATCTTACCAGACAAGATGTT 300 Query 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCT 360 Query 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGTGCTTTCCTCGTCATGCTCTCTGCTCCA 420 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGCGCTTTCCTCGTCATGCTCTCTGCTCCG 420 Query 421 ACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCATG 480 ||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||| Sbjct 421 ACCGTCTTCTCCATGTCGTTCGTTGCTAATGCCGGCGGGTACATAACGGTGAGGTTCATG 480 Query 481 ATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCAAT 540 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 481 ATCGGGTTCTGCCTCGCGACTTTCGTGTCATGCCAATACTGGATGAGCACAATGTTCAAT 540 Query 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCAGGGTGGGGGAACATGGGCGGTGGG 600 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCCGGATGGGGGAACATGGGCGGTGGG 600 Query 601 GTCACTCAGTTGCTCATGCCAATGGTCTATGAGATCATCCGACGGTTAGGGTCCACGTCC 660 ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct 601 GTCACGCAGTTGCTCATGCCGATGGTCTATGAAATCATTCGACGGTTAGGGTCCACGTCC 660 Query 661 TTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGGGTGGATGCACATCATCATGGGGATC 720 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 661 TTCACGGCGTGGAGGATGGCTTTCTTTGTCCCCGGGTGGATGCACATCATCATGGGGATC 720 Query 721 TTGGTCTTGACTCTAGGGCAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTGGTCTTGACTTTAGGACAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780 Query 781 GGTGCAGTTACTAAAGACAAGTTCTCAAAGGTTTTATGGTACGCGATCACGAACTATAGG 840 |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 781 GGTGTTGTTACAAAAGACAAGTTCTCAAAGGTTTTATGGTACGCAATCACGAACTATAGG 840 Query 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACCGATAAC 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACGGATAAC 900 Query 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCATACCGCCGGTATAATC 960 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCACACGGCCGGTATAATC 960 Query 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTATTGGTGGTTGGGCCTCAGAT 1020 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCTCGTCCTATTGGTGGTTGGGCGTCGGAC 1020 Query 1021 ATTGCGGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATTGCCGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080 Query 1081 TTAGGCGGTTTCTTCTGCCTATGGCTAGGCCGAGCCACCACGCTCCCGACCGCGGTTGTC 1140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1081 TTAGGCGGTTTCTTCTGCCTTTGGCTAGGCCGAGCCACGACGCTCCCGACCGCGGTTGTC 1140 Query 1141 TTCATGATCCTCTTCTCTCTCGGCGCTCAAGCCGCTTGTGGAGCTACCTTTGCTATCATA 1200 ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| Sbjct 1141 TTCATGATCCTCTTCTCTCTCGGGGCTCAAGCCGCTTGTGGAGCCACCTTTGCCATCATA 1200 Query 1201 CCTTTCATCTCACGCCGCTCCTTAGGGATCATCTCTGGTCTTACTGGAGCTGGTGGAAAC 1260 ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||| Sbjct 1201 CCTTTCATCTCACGCCGGTCCTTAGGCATCATCTCTGGTCTTACTGGAGCCGGAGGAAAC 1260 Query 1261 TTCGGCTCTGGTTTGACCCAACTCGTATTCTTCTCGACCTCAACGTTCTCCACGGAACAA 1320 |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| Sbjct 1261 TTCGGCTCTGGTTTGACCCAGCTTGTATTCTTCTCGACCTCAACTTTCTCTACGGAACAA 1320 Query 1321 GGGCTGACATGGATGGGGGTGATGATTATGGCGTGTACATTACCCGTCACTTTAGTGCAC 1380 ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1321 GGGCTCACGTGGATGGGGGTGATGATAATGGCGTGTACATTACCCGTCACATTAGTGCAT 1380 Query 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440 Query 1441 GAGTATTATTACATGAAAGAGTGGACAGAGACCG-AGAAGCGAAAGGGTATGCATGAAGG 1499 |||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||| Sbjct 1441 GAGTATTACTACATGAAAGAGTGGACAGAG-CCGGAGAAGCAAAAGGGTATGCATGAAGG 1499 Query 1500 GAGTTTGAAGTTCGCCGTGAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GAGTTTAAAGTTCGCCGTCAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559 Query 1560 GTCTCCTCC 1568 |||||||| Sbjct 1560 ATCTCCTCC 1568 > Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 Length=1827 Score = 425 bits (230), Expect = 4e-118 Identities = 895/1208 (74%), Gaps = 78/1208 (6%) Strand=Plus/Plus Query 127 GTGGACACCGAACACAAAGCCAAAGTCTTCAAACTC-TTATCCTTTG-AAGCTCCACATA 184 |||||| |||| || | || ||||| ||||||| | ||||| || | || ||||| | Sbjct 245 GTGGACTCCGAGCATAGGGCAAAAGTGTTCAAAC-CATTATCATTCGCAA-AACCACACA 302 Query 185 TGAGAACTTTCCATCTT-GCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTCGCT 243 ||||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| ||||| Sbjct 303 TGAGAGCTTTCCA-CTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTCCACCTTCGCA 361 Query 244 GCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCA-CAAGACAAGATGTCGG 302 ||||| ||||| |||||| | || | || ||||| || || | ||| || || |||| Sbjct 362 GCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC-CGACATCGG 420 Query 303 AAATGCTGGTGTTGCTTCTGTCTCTGGCAG-TATCTTCTCTAGGCTTGTTATGGGAGCAG 361 |||||| || || || || || || ||| | || ||||| || || | |||||| || | Sbjct 421 AAATGCCGGAGTAGCATCAGTTTCCGGC-GCCATTTTCTCAAGACTAGCTATGGGTGCCG 479 Query 362 TTTGTGATCTCCTTGG-GCCACGTTATGGCTGTGCTTTC-CTCGTCATGCTCT-CTGCTC 418 | ||||| || || || | |||||||||| |||||| ||| | ||||| | | |||| Sbjct 480 TATGTGACCTTCTAGGAG-CACGTTATGGGACCGCTTTCTCTC-TTATGCT-TACAGCTC 536 Query 419 CAACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCA 478 || |||| ||||||||||| ||||| | || ||| ||| | ||| || | || |||||| Sbjct 537 CAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCGGTTCA 596 Query 479 TGATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCA 538 ||||||| || ||| | || || ||||||||||||||||| |||| |||| ||||||| Sbjct 597 TGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTATGTTCA 656 Query 539 ATGGTCAGATCATAGGTCTAGTGAACGGGA-CAGC-GGCAGGGTGGGGGA-ACATGGGCG 595 ||| |||| || || || || ||| ||| || || ||||| ||||| ||||||| | Sbjct 657 CTGGAAAGATTATCGGACTCGTTAAC-GGATGTGCTGG-AGGGT-GGGGAGACATGGGAG 713 Query 596 GTGGGGTCACTCAGTTGCTCATGCCAATGGTCTAT-GA-GATCATCCGACGGTTA--GG- 650 | || || |||||| | |||||||||||||||| | | | ||||| || | | || Sbjct 714 GAGGAGTGACTCAGCTACTCATGCCAATGGTCT-TCAACG-TCATCAAAC--TCACCGGA 769 Query 651 GTCCACGT-CCTTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGG-GTGGATGCACATC 708 | |||| | ||||||| || |||||| | || |||||| ||||||| | | || ||| Sbjct 770 G-CCAC-TCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCAT-TCTTCAGATC 826 Query 709 ATCATGGGGA-TCTTGGTCTTGACTCTAGGGCAAGA-CCTCCCTGATGGTAATAGAAGCA 766 || ||||| | ||| | || | |||||||| ||||| | |||| |||||||| || | Sbjct 827 ATTATGGGTATTCTCGTTC-TCACTCTAGGCCAAGATCTTCCC-GATGGTAACCTTAGTA 884 Query 767 CACTCGAGAAGAAAGGTGC-AGTTACTAAAGACAAGTTCTCAAAGGT-TTTATGGTACGC 824 | ||| | |||| ||| | |||| | |||||||| ||||| ||||| ||| |||| ||| Sbjct 885 CTCTCCAAAAGAGTGGT-CAAGTTTCCAAAGACAAATTCTCCAAGGTCTTT-TGGTTCGC 942 Query 825 -GATCACGAACTATAGGACATGGGTTTTCGTGC-TGCTATATGGATACTCCATGGGAGTA 882 | | | ||||| || |||||| | || | | |||| ||||||| || |||||||| Sbjct 943 TG-TGAAAAACTACAGAACATGGATCTT-ATTCATGCTCTATGGATTTTCTATGGGAGTT 1000 Query 883 GAGCTCACAACCGATAACGTCATCGCT-GAGTACTTTTTCGACAGGTTCCATCTTAAGCT 941 || | || | | | ||| | || || || ||||| | ||| ||||| | |||| ||| Sbjct 1001 GAATTAACGATCAACAACATTATATCTGGA-TACTTCTACGATAGGTTTAACCTTACGCT 1059 Query 942 TCATACCGCCGGTATAATCGCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCC-TA 1000 ||| || |||||||| || || || |||||||||||||||||||||||||||||||| | Sbjct 1060 TCACACAGCCGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCT- 1118 Query 1001 TTGGTGGTTGGGCCTCAGATATTGCGGCTA-GACGCTTCGGCATGAGAGGCCG-TCTCTG 1058 ||||||| | |||||||| | || || | | | |||||||||||||||||| | | || Sbjct 1119 TTGGTGGCTATGCCTCAGACGTAGCTGC-ACGGCTCTTCGGCATGAGAGGCCGGT-TATG 1176 Query 1059 GACCCTATGGATCATCCAAACC-TTAGGCGGTTTCTTCTGCC-TATGGCTAGGCCGAGCC 1116 || | | |||||| | ||||| || || | | |||| || | | ||||| || || || Sbjct 1177 GATCTTGTGGATCTTACAAACTGTT-GGAGCTCTCTT-TGGCATCTGGCTTGGTCGTGCT 1234 Query 1117 ACCACGCTCCCGACCGCGGTTGTCTT--C-ATGATCCTCTTCTCTC-TCGGCGCTCAAGC 1172 | | ||||| | || | |||| | ||||| ||||| || | ||||| | ||||| Sbjct 1235 AGTTCACTCCCTATAGC--TA-TCTTAGCCATGATGCTCTTTTC-CATCGGCACACAAGC 1290 Query 1173 CGCTTGTGGAGCTAC-CTTTGCTATCATACCTTTCATCTCACGCCGCTC-CTTAGGGATC 1230 |||||||||||| | ||||| | | ||||| | || ||||| || ||| ||| | Sbjct 1291 GGCTTGTGGAGCT-CTCTTTGGTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTT-GGGCTT 1348 Query 1231 ATCTCTGGTCTT-ACTGGAGCTGGTGGAAACTTCGGCTCTGGT-TTGACCCAACT-CGTA 1287 |||||||| || ||||| ||||| ||||| || || || ||| || || ||||| | | Sbjct 1349 ATCTCTGGA-TTGACTGGTGCTGGAGGAAATTTTGGGTCGGGTGTT-ACTCAACTTCTT- 1405 Query 1288 TTCTTCTC 1295 |||||||| Sbjct 1406 TTCTTCTC 1413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5