BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60780.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332328 jgi|Araly1|332328|fgenesh1_pm.C_scaffold_8001671 2516 0.0
Ahg937163 jgi|Araly1|937163|scaffold_501354.1 963 0.0
> Ahg332328 jgi|Araly1|332328|fgenesh1_pm.C_scaffold_8001671
Length=1620
Score = 2516 bits (1362), Expect = 0.0
Identities = 1537/1623 (95%), Gaps = 6/1623 (0%)
Strand=Plus/Plus
Query 1 ATGACTCACAACCATTCTAATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCACAACCATTCTAATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACA 60
Query 61 GCAAGAGAACAAGTCTTCTCTTTCTCCGTCGATGCTTCGTCTCAAACAGTCCAATCAGAC 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 GCAAGAGAACAAGTCTTCTCTTTCTCCGTCGATGCTTCGTCTCAAACCGTCCAATCCGAC 120
Query 121 GATCCAACAGCTAAATTCGCCCTTCCGGTTGATTCCGAACATCGAGCCAAAGTGTTCAAC 180
|| ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 121 GACCCAACGGCTAAATTCGCCCTTCCCGTTGATTCTGAACATCGTGCCAAAGTGTTCAAC 180
Query 181 CCACTCTCTTTTGCTAAACCTCACATGAGAGCCTTCCACTTAGGATGGCTCTCATTCTTC 240
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 181 CCACTCTCATTTGCAAAACCTCACATGAGAGCATTTCACTTAGGATGGCTCTCTTTCTTC 240
Query 241 ACATGCTTCATCTCCACCTTCGCGGCAGCACCATTAGTCCCCATCATCCGCGACAACCTC 300
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ACTTGCTTCATCTCAACCTTCGCGGCCGCACCATTAGTCCCCATCATCCGCGACAACCTC 300
Query 301 GACCTCACTAAAACCGACATTGGAAACGCCGGAGTCGCATCCGTCTCTGGTGCCATTTTC 360
|||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 301 GACCTCACCAAAACCGACATTGGGAATGCCGGAGTCGCCTCCGTCTCTGGCGCCATTTTC 360
Query 361 TCAAGGTTAGCCATGGGAGCGGTTTGTGATCTCCTCGGTGCACGATATGGGACTGCCTTC 420
||| |||||||||||||||||||||| |||||||| ||||| || | |||||||||||||
Sbjct 361 TCACGGTTAGCCATGGGAGCGGTTTGCGATCTCCTTGGTGCGCGTTTTGGGACTGCCTTC 420
Query 421 TCCCTCATGCTAACCGCCCCAACCGTCTTCTCAATGTCGTTTGTGGGTGGCCCTAGCGGA 480
|||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 421 TCCCTCATGCTAACAGCCCCAATCGTCTTCTCAATGTCATTTGTGGGTGGCCCCAGCGGA 480
Query 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGTCTCGCCACGTTTGTATCATGCCAGTAT 540
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGCCTCGCCACGTTTGTGTCGTGCCAGTAT 540
Query 541 TGGACCAGCGTTATGTTCAACGGTAAGATCATAGGACTAGTGAACGGCTGTGCAGGCGGG 600
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 541 TGGACCAGCGTCATGTTCAACGGTAAGATCATAGGACTAGTGAATGGCTGTGCCGGCGGG 600
Query 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTAATGCCGATGGTCTTCCACGTCATC 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTCATGCCGATGGTCTTCCACGTCATT 660
Query 661 AAACTTGCCGGAGCCACTCCGTTCATGGCCTGGCGGATAGCTTTCTTCGTTCCCGGATTT 720
||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 661 AAACTCGCCGGAGCCACTCCGTTCATGGCGTGGCGCATAGCTTTTTTCGTTCCCGGATTT 720
Query 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
Query 781 CTAAGTACCCTTCAGAAGAGTGGTCAAGTCTCTAAAGACAAATTCTCCAAGGTTTTCTGG 840
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTAAGTATACTTCAGAAGAGAGGTCAAGTCTCTAAAGACAAATTCTCCAAGGTTTTCTGG 840
Query 841 TTTGCTGTGAAGAACTACAGAACATGGATTTTATTCGTTCTTTATGGATCTTCCATGGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTTGCTGTGAAGAACTACAGAACATGGATTTTATTCGTTCTTTATGGATCTTCCATGGGA 900
Query 901 ATTGAATTAACTATCAACAACGTTATCTCCGGATATTTTTACGACAGGTTTAACCTTAAG 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 ATTGAATTAACTATCAACAACGTTATCTCCGGATATTTCTACGACAGGTTTAACCTTAAG 960
Query 961 CTTCAAACAGCTGGTATAGTAGCAGCCAGCTTTGGAATGGCTAACTTCATCGCCCGTCCC 1020
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 CTTCAAACAGCTGGTATCGTAGCAGCCAGCTTTGGAATGGCTAACTTCATTGCCCGTCCC 1020
Query 1021 TTCGGTGGTTACGCTTCTGATGTAGCGGCTCGGGTTTTTGGCATGAGAGGCCGGTTATGG 1080
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1021 TTCGGTGGTTACGCTTCTGATGTAGCGGCTCGGATTTTTGGAATGAGAGGCCGGTTATGG 1080
Query 1081 ACCTTATGGATCTTTCAAACCGTAGGAGCTCTTTTCTGTATCTGGCTAGGTCGAGCTAGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACCTTATGGATCTTTCAAACCGTAGGAGCTCTTTTCTGTATCTGGCTAGGTCGAGCTAGT 1140
Query 1141 TCACTTCCCATAGCAATCCTAGCAATGATGCTCTTCTCAATCGGTACACAAGCAGCTTGC 1200
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 1141 ACACTTCCCATAGCAATCTTAGCAATGATGCTCTTCTCAGTCGGGACACAAGCAGCTTGT 1200
Query 1201 GGAGCCCTCTTCGGAGTTGCACCTTTTGTCTCGCGCCGCTCTCTAGGGCTCATATCGGGA 1260
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGCCCTCTTCGGGGTTGCGCCTTTTGTCTCGCGCCGCTCTCTAGGGCTCATATCGGGA 1260
Query 1261 CTAACCGGCGCAGGAGGAAACTTCGGGTCCGGTTTGACTCAACTGCTTTTCTTCTCATCA 1320
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTAACCGGCGCAGGAGGAAACTTTGGGTCCGGTTTGACTCAACTGCTTTTCTTCTCATCA 1320
Query 1321 GCGAGGTTTAGTACAGCTGA-GGGACTCTCATTGATGGGCGTTATGGCGGTTTTGTGCAC 1379
|||||||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1321 TCGAGGTTTAGTACAGCGGAAGGG-CTCTCGTTGATGGGCGTTATGGCAGTTTTGTGCAC 1379
Query 1380 -ACTCCCAGTTGCGTTTATACATTTTCCGCAATGGGGAAGCATGTTTTTAAGACCGTCGA 1438
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GA-TCCCGGTTGCGTTTATACATTTTCCGCAATGGGGAAGCATGTTTTTAAGACCGTCGA 1438
Query 1439 -CCGATGGAGAAAGATCACAGGAGGAATATTATTACGGTTCTGAGTGGACGGAGAATGAG 1497
|| ||||||||||||| ||||| |||||||||||| |||| |||||||| ||||| |||
Sbjct 1439 GCC-ATGGAGAAAGATCGCAGGAAGAATATTATTACAGTTCCGAGTGGACTGAGAACGAG 1497
Query 1498 AAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGCAGAGAATAGTAGGTCAGAGAGA 1557
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||
Sbjct 1498 AAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGCTGAGAATAGTCGGCCAGAAAGA 1557
Query 1558 GGCCGGAAAGTAGCTTTGGCTAACATTCCAACGCCGGAGAACGGAACTCCAAGTCATGTT 1617
||||| |||||||||||| || | ||||||||||||| ||||| ||||||||||||||||
Sbjct 1558 GGCCGAAAAGTAGCTTTGACTGATATTCCAACGCCGGCGAACGCAACTCCAAGTCATGTT 1617
Query 1618 TGA 1620
|||
Sbjct 1618 TGA 1620
> Ahg937163 jgi|Araly1|937163|scaffold_501354.1
Length=1669
Score = 963 bits (521), Expect = 0.0
Identities = 1248/1592 (78%), Gaps = 77/1592 (5%)
Strand=Plus/Plus
Query 20 ATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACAGCAAGAGAACAAGTCTTCT 79
|||| |||||||| ||||| |||||| ||||||||||||| || || |||||||||||||
Sbjct 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96
Query 80 -CTT-TC--TC--CGTC---GAT-G-C-TTCG-TCTCAA-ACAGTCCAATCAGACGATCC 125
||| || || || | | | | | || | | |||| | |||| ||| || |||||
Sbjct 97 CCTTCTCTGTCGACGGCAATGCTAGCCATTTGAT-TCAAGTC-GTCCGATCGGATGATCC 154
Query 126 AACAGCTAAATTCGCCCTT-CCGGTTGATTCCGAACATCGAGCCAAAGTGTTCAACCCAC 184
||| ||||| || |||| |||||||| || |||||| |||| ||||||||||| |||
Sbjct 155 AACGGCTAAGTT-TTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCAT 213
Query 185 TCTCTTTTGCTAAACCTCACATGAGAGCCTTCCACTTAGGATGGCTCTCATTCTTCACAT 244
| || || || ||||| ||||||||||| || |||||||||||| | || |||||||| |
Sbjct 214 TTTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTT 273
Query 245 GCTTCATCTCCACCTTCGCGGCAGCACCAT-TAGTCCCCATCATCCGCGACAACCTCGAC 303
|||||||||| || || || || ||||| | | || ||||||||| | || ||||||||
Sbjct 274 GCTTCATCTCTACTTTTGCCGCCGCACC-TCTCGTTCCCATCATCAGAGATAACCTCGAT 332
Query 304 CTCACTAAAACCGACATTGGAAACGCCGGAGTCGCATCCGTCTCTGGTGCCATTTTCTCA 363
| || |||| || |||||||||||||||||||| || || || || || ||||||||
Sbjct 333 TTGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCT 392
Query 364 AGGTTAGCCATGGGAGCGGTTTGTGATC-TCCTCGGTGC-ACGATATGGGACTGCCTTCT 421
||| | || |||||||| |||||||| | | ||||| || | | || || || || || |
Sbjct 393 AGGCTCGCTATGGGAGCTGTTTGTGA-CTTGCTCGGGGCTA-GGTACGGAACGGCGTTTT 450
Query 422 CCCTCATGCTAACCGCCCCAACCGT-CTTCTCAATGTCGTTTGTGGGTGGCCCTAGCGGA 480
|| ||| || | || ||||| || || | ||||| ||||||| | | || | ||
Sbjct 451 TGCTGATGTTATCAGCTCCAACAGTGTTTAGC-ATGTCCTTTGTGGCTAACGCTGGTGGC 509
Query 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGTCTCGCCACGTTTGTATCATGCCAGTAT 540
||||||| ||||||||||||||| || || ||||| || ||||| || ||||| || |||
Sbjct 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTGTCTAGCAACGTTCGTGTCATGTCAATAT 569
Query 541 TGGACCAGCGTTATGTTCAACGGTAAGATCATAGGACTAGTGAACGGCTGTGCAGGCGGG 600
||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||||| || |||
Sbjct 570 TGGACAAGCGTGATGTTCAACGGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAGGG 629
Query 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTAATGCCGATGGTCTTCCACGTCATC 660
||||| |||||||| || ||||||||||| || || ||||| ||||||||| ||||||||
Sbjct 630 TGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATC 689
Query 661 AAACTTGCCGGAGCCACTCCGTTCATGGCCTGGCGGATAGCTTTCTTCGTTCCCGGATTT 720
||||| |||||||||| ||| || |||| ||| |||| || |||||||| ||||| |||
Sbjct 690 AAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGTTT 749
Query 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
|| || || ||||||||||||| || |||| ||| || |||||||| ||||| || |||
Sbjct 750 CTACAGGTCATTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGAAAC 809
Query 781 CTAAGTACCCTTCAGAAGAGTGGTCAAGTCTCTAAAGACAAATTCTCCAAGGT-TTTCTG 839
|| ||||| || ||||||| || | || || |||||||| ||||||||||| ||| ||
Sbjct 810 CTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT-TG 868
Query 840 GTTTGCTGTGAAGAACTACAGAACATGGAT-T-TTATTCGTTCTTTATGGATCTTCCATG 897
|| |||||||| |||||| ||||| | || | || ||| |||| ||||||| |||||||
Sbjct 869 GTATGCTGTGATGAACTATAGAAC--GTATGTGTTGTTCCTTCTCTATGGATTTTCCATG 926
Query 898 GGAATTGAATTAACTATCAACAACGTTATCTCCGGA-TATTT-TTACGACAGGTTT-AAC 954
||||| ||| | || |||||||| ||||||| | || ||||| || |||||||||| ||
Sbjct 927 GGAATCGAAATGACCATCAACAATGTTATCT-CAGAGTATTTCTT-CGACAGGTTTCAA- 983
Query 955 CTT-AAGCTTCAAACAGCTGGTATAG-TAGCAGCCAGCTTTGGAATGGCTAACTTCATCG 1012
||| || ||||| ||||||||||| | |||||||||||||||| |||||||||||| |||
Sbjct 984 CTTCAA-CTTCACACAGCTGGTAT-GATAGCAGCCAGCTTTGGTATGGCTAACTTCTTCG 1041
Query 1013 CCCGT-CCCTTCGGTGGTTACGCTTCTG--ATGTAGCGGCTCGGGTTTTT-GGCATGAGA 1068
| ||| ||||| ||||| || || |||| |||| | |||| ||||||| || ||||||
Sbjct 1042 CTCGTCCCCTT-GGTGGCTATGCATCTGACATGT--CTGCTC-GGTTTTTCGGTATGAGA 1097
Query 1069 GGCCGGTTATGGA-CCTTATGGATCTTT-CAAACCGT-AGGAGCTCTTTTCTGTATCTGG 1125
|| |||||||||| |||| ||||| ||| |||| | | || | ||||||||| | |||
Sbjct 1098 GGGCGGTTATGGACCCTT-TGGAT-TTTACAAA-CTTCTGGTGGACTTTTCTGTGTTTGG 1154
Query 1126 CTAGGTCGAGCTAGTTCACTTCCCATAGCAATCCTAGCAATGATGCTCTTCTCAATCGGT 1185
||||| || |||| ||||||||| ||||| || |||| ||||||||||||||| | ||
Sbjct 1155 CTAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTCAGTTGGC 1214
Query 1186 ACACAAGCAGCTTGCGGAGCCCTCTTCGG-AGTTGCACCTTTTGTCTCGCGCCGCT-CTC 1243
||||| ||||| ||||| ||||||| | | | ||||||||||||||||||| ||
Sbjct 1215 GTGCAAGCTGCTTGTGGAGCTATCTTCGGCA-TCGTTCCTTTTGTCTCGCGCCGCTCCT- 1272
Query 1244 TAGGGCTCATATCGGGACTAACCGGCGCAGGAGGAAACTTCGGGTCCGGTTTGACTCAAC 1303
||||||| ||||| ||||| ||||| ||||||||||| || || || || | |||||||
Sbjct 1273 TAGGGCTAATATCAGGACTTACCGGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAAC 1332
Query 1304 TGCTTTTCTTCTCATCAGCGAGGTT-TAGTACAGCTGAGGGAC-TCTCATTGATGGGCGT 1361
|| |||| ||||| || | || || | || || || || | | || ||||||| |
Sbjct 1333 TGATTTTTTTCTCTTCCTCAAGATTCCA-CACTGCCGATGG-CTTGTCGCTGATGGGAAT 1390
Query 1362 TATGGC---GGTTTTGTGCACACTCCCAGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1418
||||| |||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 1391 CATGGCGATGGTTTT-T--ACGCTTTTGGTTGCGTTTATACATTTTCCGCAATGGGGAAG 1447
Query 1419 CATGTTTTTAAGACCGTCGACCGATG-GA-GAAAGATCACAGGAGGAATATTATTACGGT 1476
|||||||| |||| | | || | || ||||| | | ||| || |||||||||
Sbjct 1448 TATGTTTTTTGGACCAACAAGTGACGAGAAGAAAG-T-ATTGGAAGAGCATTATTACGCA 1505
Query 1477 TCTGAGTGGACGGAG-AATGAGAAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGC 1535
| |||||||| ||| || ||||| | ||||||||||| ||||| ||| | ||||||||
Sbjct 1506 GCCGAGTGGACTGAGGAA-GAGAAGCGGCAAGGATTGCATGAAGGTAGCCTTAAATTTGC 1564
Query 1536 AGAGAATAGTAGGTCAGAGAGAGGCCGGAAAG 1567
|||||||||| | ||||| |||||||| ||||
Sbjct 1565 AGAGAATAGTCGATCAGAAAGAGGCCG-AAAG 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5