BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60800.2
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496228 jgi|Araly1|496228|fgenesh2_kg.8__2044__AT5G60800.1 1393 0.0
> Ahg496228 jgi|Araly1|496228|fgenesh2_kg.8__2044__AT5G60800.1
Length=1154
Score = 1393 bits (754), Expect = 0.0
Identities = 876/931 (94%), Gaps = 23/931 (2%)
Strand=Plus/Plus
Query 6 TCCCATTTCCTCCGACTCTGTCTCTACCCACTTCCTTCCTTCTCCCACTACTCTCTCACT 65
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCCCATTTCCTCCGACTCTTTCTCTACCCA----CTTCCTTCTCCCACTACTCTCTCACT 56
Query 66 AACCGATTCATCATGGGCgagaagaagaacgaaggagataacaagaagaaaggaggagat 125
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 57 AACCGAGTCATCATGGGCGAGAAGAAGAACGATGGAGATAACAAGAAGAAAGGAGGAGAT 116
Query 126 aacaagaagaagaacgaaacGCCTTCCATCACCGTCGTTTTGAAGGTCGACATGCATTGT 185
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 117 AACAAGAAGAAGAACGAAACGCCGTCAATCACCGTCGTTTTGAAGGTCGACATGCATTGT 176
Query 186 GAAGGTTGTGCTTCTCGAATCGTCAAATGTGTTCGATCTTTCCAAGGTGTTGAGACTGTG 245
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 177 GAAGGTTGTGCTTCTCGAATCGTCAAATGTGTTCGTTCTTTCCAAGGTGTTGAGACGGTG 236
Query 246 AAATCGGAGTCGGCTACAGGGAAACTTACGGTGACCGGAGCATTAGATCCGGTGAAGTTA 305
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 237 AAATCGGAGTCTGCGACAGGGAAACTTACGGTGACCGGAGCTTTAGATCCGGTGAAACTC 296
Query 306 AGGGAGAAACTTGAAGAGAAGACAAAGAAGAAAGTCGATTTGGTTTCTCCTCAACCaaaa 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 AGGGAGAAACTTGAAGAGAAGACAAAGAAGAAAGTCGATTTGGTTTCTCCTCAACCCAAA 356
Query 366 aaggaaaaagagaaagag-------a--acaaaaacaaaaacgatgaagacaaaaaaaaa 416
|||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 357 AAGGAAAAAGAGAAAGAGAACAATAAGGACAAAAACAAAAACGATGAAGACAAAAAAAAA 416
Query 417 TCAGAGGAGAAGAAGAAACCAGACAACAATGACAAAAAACCCAAAGAGACTCCGGTAACA 476
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 417 TCAGAGGAGAAGAAGAAACCAGACAACAACGAGAAAAAACCCAAAGAGACTCCGGTAACA 476
Query 477 ACGGCGGTGTTGAAGCTGAACTTCCATTGTCAAGGTTGTATCGGGAAAATCCAAAAGACT 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACGGCGGTATTGAAGCTGAACTTCCATTGTCAAGGTTGTATCGGGAAAATCCAAAAGACT 536
Query 537 GTCACAAAAACCAAAGGTGTTAATGGTTTAACAATGGACAAAGAGAAGAATTTGCTGACG 596
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 537 GTCACAAAAACCAAAGGTGTTAATGGTTTAACGATGGATAAAGAGAAGAATTTGGTGACG 596
Query 597 GTTAAAGGAACAATGGATGTTAAAAAGCTCGTTGAGATTTTGAGTGAGAAGCTCAAACGT 656
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 597 GTTAAAGGAACAATGGATGTTAAAAAACTCGTTGAGAGTTTGAGTGAGAAGCTGAAACGT 656
Query 657 GC-GGTGGAGATTGTGCCGCCgaagaaagagaaagataaagagaatggtaacgaaaatgg 715
| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 657 -CAGGTGGAGATTGTGCCGCCGAAGAAAGAGAAAGA-AAA-----TGGTAACGAAACTGG 709
Query 716 cgagaagaagaaagGTGGCGGCGGAGACGGTGGTGGGAAAG-AGAAAACCGGTAACAAAG 774
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||
Sbjct 710 CGAGAAGAAGAAAGGTGGCGGCGGAGACGGTGGTGG-AAAGGAGAAATCTGGTAACAAAG 768
Query 775 GCGGTGGTGAGGGAGTGAATATGATGGAGTACATGGCGGCTCAGCCAGCTTACGGTTATG 834
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 769 GCGGTGGTGAGGGAGTGAATATGATGGAGTACATGGCGGCTCAGCCTGCTTACGGGTACG 828
Query 835 GGTATTACCCGGGTGGGCCTTATGGATATCCGATTCAGGCCCACGCGCCGCAGATTTTTA 894
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 829 GGTATTATCCGGGTGGGCCTTATGGGTATCCGATTCAAGCCCACGCGCCGCAGATTTTTA 888
Query 895 GCGATGAGAATCCGAATGCTTGTGTTGTTAT 925
|||||||||||||||||||||||||||||||
Sbjct 889 GCGATGAGAATCCGAATGCTTGTGTTGTTAT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5