BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G60805.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332331 jgi|Araly1|332331|fgenesh1_pm.C_scaffold_8001674           335    1e-91


> Ahg332331 jgi|Araly1|332331|fgenesh1_pm.C_scaffold_8001674
Length=330

 Score =  335 bits (181),  Expect = 1e-91
 Identities = 288/336 (86%), Gaps = 21/336 (6%)
 Strand=Plus/Plus

Query  1    ATGAAGACACTTTCCTTGTTTTTCACTCTTGTAATTCTTATCTCATCATGTGTATCAAAT  60
            ||||||||||||| || ||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct  1    ATGAAGACACTTTTCTCGTTTTTCACTCTTCTTATTCTTATTTCACCATGTGTATCAAAT  60

Query  61   CTTATGGCAAAACATGATTCAGAGAGAAAAGCTCCCTTTTCTAATCACGGA-ATGAGGCT  119
            |||||||||||||||||||||||||||||| |||||||||||||||||||| |  || | 
Sbjct  61   CTTATGGCAAAACATGATTCAGAGAGAAAAACTCCCTTTTCTAATCACGGAGA-AAGCCA  119

Query  120  TCAACATCCA-CCATATTTGCATTTTC--A----AAG-CTACAGAGGTCATTTTATTCCT  171
            |||| || || |||||| |||||||||  |    ||| | |||||  | |||||||||||
Sbjct  120  TCAAAAT-CAGCCATATGTGCATTTTCGAAGTCGAAGAC-ACAGAAATTATTTTATTCCT  177

Query  172  GAGGAATGTACCGA-GTTATGTCCACAGCGTTGTTTAAGAAGACATAGGTTAATGGTA-T  229
            |||||||||| | | |||||||||| ||||||||||||||| |||||| ||||||||| |
Sbjct  178  GAGGAATGTA-CTATGTTATGTCCAGAGCGTTGTTTAAGAAAACATAGATTAATGGTATT  236

Query  230  CT-T-GTATTCCACAACATTTTTGTCGTTGTAGCTCCTTCCAATTAAGCCCCCCTCACAT  287
            || | |||||||||||||| ||||||||||||| || || ||| ||||  ||||||||||
Sbjct  237  CTGTAGTATTCCACAACATATTTGTCGTTGTAGTTCTTTTCAAATAAGGTCCCCTCACAT  296

Query  288  TGCAACTTCTCCTAAACAGT-ATTCTAAA-AAATAA  321
            |||||||||||||||||| | |||  ||| ||||||
Sbjct  297  TGCAACTTCTCCTAAACAATCATT--AAATAAATAA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5