BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60820.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950832 jgi|Araly1|950832|scaffold_802719.1 1790 0.0
> Ahg950832 jgi|Araly1|950832|scaffold_802719.1
Length=1283
Score = 1790 bits (969), Expect = 0.0
Identities = 1179/1276 (92%), Gaps = 32/1276 (3%)
Strand=Plus/Plus
Query 41 CCGGAAAATATGGCGGAGATGTCTTACCTTCAGATCGACGATGCTAACGATGCCGTTTTC 100
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 13 CCGGAAAATATGGCGGAGCTGTCTTGCCTTCAGATCCACGATGCTAACGATGCCGTTTTC 72
Query 101 AACCATTACCGCCACCAACGGCGGCTACATGATCACCTGAGAGATCAATCGTTTTCTCAG 160
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 73 AACCATTACCACCACCAACGGCGGCTACATGATCGCCTGAGAGATCAATCGTTTTCTCAG 132
Query 161 ATCCTATATCCGCTTCCTCACTGGATCCAATCAGACGACGGCGATCTCTACATCTCTGAA 220
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 133 ATCCTCTATCCGCTTCCTCACTGGGTCCAATCAGACGACGGCGATCTCTACGTCTCTGAA 192
Query 221 ACCGATTTTTCTTCCGGCGACGTTTCGGTGTCCGATCTAGTATTCACGACCGACGACGGT 280
||||||||||| |||||||||||||||| |||||| ||||||||||| | | |||||||
Sbjct 193 TCCGATTTTTCTCCCGGCGACGTTTCGGTTTCCGATTTAGTATTCACGGCGGCCGACGGT 252
Query 281 CTCGATCTTCTCGATCGGCGTAGCTTTGTTATGGATCTGTTCCACCAACGCGTTGAGCAA 340
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 253 CTTGATCTACTCGATCGGCGTAGCTTTGTCATGGATCTGTTCCACCAACGCGTTGAACAA 312
Query 341 TCTCAGGTAACTCCGCTTGATAATGACGGAATCGATGATTTCGAAAATTACGAGATGCGT 400
||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 313 TCTCAGGTATGTCCGCTTGATGATGATGGAATCGATGATTTCGAAAATTACGAGATGCGT 372
Query 401 G-AGGATAATGTGGAACTTGATTTTGGATTGGAGATGGAATCTGGTAACGGTTTCGTTGA 459
| || ||||||||||||||||||||||||||||| | ||||||||| || ||||||
Sbjct 373 GGAG-ATAATGTGGAACTTGATTTTGGATTGGAGTTAGAATCTGGT-----TT-CGTTGA 425
Query 460 TAGTGATCTTGTTGTTAACCTTAATGAACACG-TT--G---ATGGGATGAGGTTATTAGG 513
||||||||||||| |||||||||||||||||| || | |||||||||||||||||||
Sbjct 426 TAGTGATCTTGTTCTTAACCTTAATGAACACGATTTCGTTGATGGGATGAGGTTATTAGG 485
Query 514 GATTGAGTCAGGCGATGTTATAGTTACAGTGGAATCGTGTTTTGATTCTGATGATGAAGA 573
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 486 GATTGAGTCACGCGATGTTGTAGTTACAGTGGAATCGGGTTTTGATTCTGATTATGAAGA 545
Query 574 TGATCAAGAGAAGGAAGAGAGTGAGATTTGGGGAATAGATTtgaatgaagaagatgagta 633
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 546 TGATCAAGAGAAGGATGAGAGTGAGATTTGGGGAATTGATTTGAATGAAGAAGATGAATA 605
Query 634 tgtgaatgatgatgatgataatgatgatgaagaagaagatgCTAGTGTGACAATCCCTCT 693
||||||||| | || | |||||||||||||||||||||||||||||||| |||||
Sbjct 606 TGTGAATGA-G--GA-G-----GATGATGAAGAAGAAGATGCTAGTGTGACAATTCCTCT 656
Query 694 TTGTTGGGATTCACTTCAATTAGAAGATTTAGGAATAAACAATGAGGATTGCGAGTGGGA 753
|||||||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||
Sbjct 657 TTGTTGGGATTCACTTCAGTTGGAAGATTTAGGAATAAACAACGAGGATTTCGAATGGGA 716
Query 754 AGAAGTTGATAGTGATGATGAGAGGGAGGTTTTGAGTGTTTTAGCAGAAGCTGATGATAA 813
|||||||||| |||| |||||||||||||||| || ||||||| | |||| | |
Sbjct 717 AGAAGTTGATGGTGACGATGAGAGGGAGGTTTCAAGCGTTTTAG-A-----TGAT-A-A- 767
Query 814 CAATTCTGTATCAGTCTCTGTCGCAGCTACAATATCTTTGGAAGATTTAGCGATAAGTGA 873
|||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||
Sbjct 768 CAATTCGGTATCAGTCTCTGTCTCAGCCACAATCTCTTTAGAAGATTTAGCGATAAGTGA 827
Query 874 GAGAAGGGGAAGTAGTAATCTAGGGTGGGAAGTTCTGTTGAATTCTCGTAGTCTCGAGTT 933
|||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||
Sbjct 828 GAGAAGGGGAAGTAATAGTCTAGGGTGGGAAGTTTTGTTGAATTCTCGTAGTCTTGAGTT 887
Query 934 TAATCTAGATGATGCAGAAAGCAACTTGGAGTTATACATTGGTGATATTGATCATGAAGA 993
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TAACCTAGATGATGCAGAAAGCAACTTGGAGTTATACATTGGTGATATTGATCATGAAGA 947
Query 994 AGAAGATTATGAAGATTATCTTCATACAACAGAGTATGAGATGTTGTTTGAAGCTGAGAT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGAAGATTATGAAGATTATCTTCATACAACAGAGTATGAGATGTTGTTTGAAGCTGAGAT 1007
Query 1054 TTCATCTGGTATTGGTAAGCCTCCAGCATCTAAATCATTCATAAAGAATCTGAAAGTGTC 1113
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1008 CTCATCTGGTATTGGTAAGCCTCCAGCATCCAAATCATTCATAAAGAATCTGAAAGTGTC 1067
Query 1114 TCCTTTGAGCAATGAGGATGTTATGGAGAACGATGATGATGCGGTGTGTTGTGCGGTTTG 1173
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1068 TCCTCTGACCAATGAGGATGTTATGGAGAACGATGATGACGCGGTGTGTTGTGCGGTTTG 1127
Query 1174 CAAGGAAGAGATGATTGTAGGAAAGGAGGTTGCAGAGTTGCCTTGTAGACATAAGTACCA 1233
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CAAAGAAGAGATGAATGTAGGAAAGGAGGTTGCAGAGTTGCCTTGTAGACATAAGTACCA 1187
Query 1234 TAGTGAATGTATTGTTCCATGGCTTGGGATTAGAAATACGTGTCCTGTTTGTCGTTTTGA 1293
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1188 TAGTGAATGTATTGTTCCATGGCTCGGGATTAGGAATACGTGTCCTGTTTGTCGTTTCGA 1247
Query 1294 GTTGCCTTCAGATTGA 1309
||||||||| ||||||
Sbjct 1248 GTTGCCTTCGGATTGA 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5