BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60830.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480043 jgi|Araly1|480043|fgenesh2_kg.3__2744__AT5G60830.1 857 0.0
Ahg496230 jgi|Araly1|496230|fgenesh2_kg.8__2046__AT5G60830.1 830 0.0
Ahg951943 jgi|Araly1|951943|scaffold_26900003.1 472 2e-132
Ahg951946 jgi|Araly1|951946|scaffold_26900006.1 462 1e-129
Ahg951944 jgi|Araly1|951944|scaffold_26900004.1 375 1e-103
Ahg342720 jgi|Araly1|342720|fgenesh1_pg.C_scaffold_3002483 102 3e-21
Ahg359469 jgi|Araly1|359469|fgenesh1_pg.C_scaffold_269000004 97.1 1e-19
Ahg359466 jgi|Araly1|359466|fgenesh1_pg.C_scaffold_269000001 97.1 1e-19
Ahg342718 jgi|Araly1|342718|fgenesh1_pg.C_scaffold_3002481 65.8 4e-10
> Ahg480043 jgi|Araly1|480043|fgenesh2_kg.3__2744__AT5G60830.1
Length=564
Score = 857 bits (464), Expect = 0.0
Identities = 533/566 (94%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
Query 61 CACGACGATCATTTCAACTCGGCATTCCTACCAAACACTGACTTTAATGTTCATTTGCAG 120
|| ||||||||||||| ||| || |||||||||||||||||||| ||||| || ||| |
Sbjct 61 CAGGACGATCATTTCAGCTCAGCCTTCCTACCAAACACTGACTTCAATGTCCAGTTGAAT 120
Query 121 TCAAACGTATCGACCCGCATCAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 180
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCA---TATCGACCCGCAGCAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 177
Query 181 TTCCATAACGAAGGTCTTGCTCCAGAAGAAAGAAGAGCAAGAAGAATGGTCTCTAACCGG 240
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 178 TTCCATAATGAAGGTCTTGCTCCAGAAGAAAGGAGGGCAAGAAGAATGGTCTCTAACCGG 237
Query 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAATCTGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 297
Query 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 298 GTTGAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 356
Query 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 357 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA 416
Query 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTGCTCATGGCAGATGTGTTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 476
Query 480 CAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGTCCCTTTGCCAG 539
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 477 CAATGTCAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGTCCCTTTGTCTG 536
Query 540 TAGTACTATGATTGATGCCATGTATG 565
|||||||||||||||||| || ||||
Sbjct 537 TAGTACTATGATTGATGC-ATATATG 561
> Ahg496230 jgi|Araly1|496230|fgenesh2_kg.8__2046__AT5G60830.1
Length=585
Score = 830 bits (449), Expect = 0.0
Identities = 508/536 (95%), Gaps = 5/536 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCGTCTAGTGTCCATCGCTCTCATTGTTTCGATATTCTTGATGGAGTCCCACTA 60
Query 61 CACGACGATCATTTCAACTCGGCATTCCTACCAAACACTGACTTTAATGTTCATTTGCAG 120
|| ||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 61 CAGGACGATCATTTCAGCTCGGCATTCCTACCAAACACTGACTTCAATGTCCAGTTGAAT 120
Query 121 TCAAACGTATCGACCCGCATCAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 180
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TC---CATATCGACCCGCAACAACAATCAGTCTCACTTAGACCCAAATGCAGAAAACATT 177
Query 181 TTCCATAACGAAGGTCTTGCTCCAGAAGAAAGAAGAGCAAGAAGAATGGTCTCTAACCGG 240
|||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 178 TTCCATAATGAAGGTCTAGCTCCAGAAGAAAGGAGGGCAAGAAGAATGGTCTCTAACCGG 237
Query 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAATCTGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 297
Query 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 298 GTTGAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 356
Query 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 416
Query 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTGCTCATGGCAGATGTGTTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 476
Query 480 CAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGTCCCTTTG 535
||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 477 CAATGTGAATTATCTAAGAGGAGAAACTTCAAACCGTCCCACCAACAGTTCCTTTG 532
> Ahg951943 jgi|Araly1|951943|scaffold_26900003.1
Length=579
Score = 472 bits (255), Expect = 2e-132
Identities = 290/307 (94%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 230 TCTCTAACCGGGAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGC 289
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCTAACCGGGAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGC 300
Query 290 TGCAACAACAAGTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATC 348
||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 301 TGCAACAACAAGTCAAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATC 359
Query 349 AACTTGTTGGAAAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTC 408
||||| |||||||||||||| || ||||| || ||||||||||||||||||||||||| |
Sbjct 360 AACTTCTTGGAAAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCC 419
Query 409 TCTTCCTTTCACTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAAC 468
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 420 TCTTCCTTTCACTTGCTCATGGCAGATGTGTTATTACCCATGAGAATTGCAGAGAGCAAT 479
Query 469 ATCAATGACCGCAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGT 528
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 ATCAATGACCGCAATGTGAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGT 539
Query 529 CCCTTTG 535
|||||||
Sbjct 540 CCCTTTG 546
> Ahg951946 jgi|Araly1|951946|scaffold_26900006.1
Length=328
Score = 462 bits (250), Expect = 1e-129
Identities = 281/296 (95%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 60
Query 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 GTTAAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 119
Query 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA 179
Query 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 180 CTTGCTCATGGCAGATGTGTTATTACCCATGAGTAATGCAGAGAGCAATATCAATGACCG 239
Query 480 CAATGTGAATTATCTAAGAGGAGAACCATCAAACCGTCCCACCAACAGTCCCTTTG 535
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 CAATGTGAATTATCTAAGAGGAGAAACATCAAACCGTCCCACCAACAGTCCCTTTG 295
> Ahg951944 jgi|Araly1|951944|scaffold_26900004.1
Length=245
Score = 375 bits (203), Expect = 1e-103
Identities = 232/246 (94%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 241 GAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCTGCAACAACAA 300
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAAATCGAAGAGCTGCAACAACAA 60
Query 301 GTTGAACAACTCATGATGTTGAATCATCACTTGTC-TGAGAAAGTCATCAACTTGTTGGA 359
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 GTTGAACAGCTCATGATGTTGAATCATCACTTG-CATGAGAAAGTCATCAACTTGTTGGA 119
Query 360 AAGCAACCATCAGATCCTACAAGAGAACTCACAGCTGAAAGAGAAAGTCTCTTCCTTTCA 419
||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAGCAACCACCAAATCCTGCACGAGAACTCACAGCTGAAAGAGAAAGCCTCTTCCTTTCA 179
Query 420 CTTGCTCATGGCAGATGTGCTATTACCCATGAGAAATGCAGAGAGCAACATCAATGACCG 479
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 180 CTTGCTCATGGCAGATGTGTTATTACCCATGAGAAATGCATAGAGCAATATCAATGACCG 239
Query 480 CAATGT 485
||||||
Sbjct 240 CAATGT 245
> Ahg342720 jgi|Araly1|342720|fgenesh1_pg.C_scaffold_3002483
Length=630
Score = 102 bits (55), Expect = 3e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 233 CTAACCGGGAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 290
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 630 CTAACCGGGAATCTGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 573
> Ahg359469 jgi|Araly1|359469|fgenesh1_pg.C_scaffold_269000004
Length=621
Score = 97.1 bits (52), Expect = 1e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 233 CTAACCGGGAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 290
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTAACCGGGAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 564
> Ahg359466 jgi|Araly1|359466|fgenesh1_pg.C_scaffold_269000001
Length=332
Score = 97.1 bits (52), Expect = 1e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 233 CTAACCGGGAATCTGCAAGGAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 290
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 332 CTAACCGGGAATATGCAAGAAGGTCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 275
> Ahg342718 jgi|Araly1|342718|fgenesh1_pg.C_scaffold_3002481
Length=594
Score = 65.8 bits (35), Expect = 4e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 256 TCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 290
|||||||||||||||||||||||||||||||||||
Sbjct 594 TCACGTATGCGCAAAAAGAAGCAGATCGAAGAGCT 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5