BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60840.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358290 jgi|Araly1|358290|fgenesh1_pg.C_scaffold_8002077 845 0.0
Ahg359470 jgi|Araly1|359470|fgenesh1_pg.C_scaffold_269000005 806 0.0
Ahg887948 jgi|Araly1|887948|Al_scaffold_0269_3 800 0.0
Ahg887947 jgi|Araly1|887947|Al_scaffold_0269_2 791 0.0
Ahg342719 jgi|Araly1|342719|fgenesh1_pg.C_scaffold_3002482 791 0.0
Ahg342718 jgi|Araly1|342718|fgenesh1_pg.C_scaffold_3002481 743 0.0
Ahg359469 jgi|Araly1|359469|fgenesh1_pg.C_scaffold_269000004 725 0.0
Ahg342720 jgi|Araly1|342720|fgenesh1_pg.C_scaffold_3002483 710 0.0
Ahg342721 jgi|Araly1|342721|fgenesh1_pg.C_scaffold_3002484 590 6e-168
Ahg887404 jgi|Araly1|887404|Al_scaffold_0215_2 499 1e-140
Ahg359466 jgi|Araly1|359466|fgenesh1_pg.C_scaffold_269000001 363 2e-99
Ahg951943 jgi|Araly1|951943|scaffold_26900003.1 110 2e-23
> Ahg358290 jgi|Araly1|358290|fgenesh1_pg.C_scaffold_8002077
Length=615
Score = 845 bits (457), Expect = 0.0
Identities = 568/621 (91%), Gaps = 10/621 (2%)
Strand=Plus/Plus
Query 74 GACGACCGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACC 133
||||| |||| || |||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 3 GACGAGCGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCC 62
Query 134 ACAGGAGAAGCCAGGCAACGCTGAACTCT-TTTCCCCCGCTCCTCCCTCTCCGCCGCCGC 192
||||||| |||| || | |||||| | ||||| ||||||||||||||||| | ||
Sbjct 63 GCAGGAGATTCCAGTCATCTCTGAAC-ATATTTCCGCCGCTCCTCCCTCTCCG--G-CGG 118
Query 193 CAAAAATTACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTG 252
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 119 CACAAATTACGATGATGGATATTGTGAATAGCAACAGAATTTTAACAGATCAACTGGTTG 178
Query 253 ATGAAGACCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAA 312
|||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 179 TTGAAGAACCATCCTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAA 238
Query 313 GCTACGAAGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAAT 372
| || |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 GATATGAAGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAAT 298
Query 373 ATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCAC 432
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 299 ATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCAC 358
Query 433 GTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaag 492
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 359 GTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCA---TCGAAGAAG 415
Query 493 aagaagtagga-gaagtagaagaaatggaagaggtagaagaggttgaagaagaagtagat 551
|||||| | || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 416 AAGAAG-AAGATGAAGTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAA 474
Query 552 gaagtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGATA 611
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 GAAGTAGGAGATGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGAGATA 534
Query 612 CCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGAG 671
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 535 CCCAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCAAG 594
Query 672 AAACCAGATTTTCCCATTTAG 692
||||||||| | |||||||||
Sbjct 595 AAACCAGATATGCCCATTTAG 615
> Ahg359470 jgi|Araly1|359470|fgenesh1_pg.C_scaffold_269000005
Length=621
Score = 806 bits (436), Expect = 0.0
Identities = 563/622 (91%), Gaps = 18/622 (3%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaagaagt 499
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCG---AAGAAGAAGAAG- 421
Query 500 aggagaagtagaagaaatggaagaggtagaagaggttgaagaagaagt--a-ga--t-g- 552
| || | ||||||||||||||||| ||||||||||||||||||||||| | || | |
Sbjct 422 ATGA-A-GTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGAAGTAGG 479
Query 553 a-a-gtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGAT 610
| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGAAGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGAGAT 539
Query 611 ACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGA 670
||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 540 ACCCAATGGTGAAATCCCCAGTGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGGCAA 599
Query 671 GAAACCAGATTTTCCCATTTAG 692
|||||||||| | |||||||||
Sbjct 600 GAAACCAGATATGCCCATTTAG 621
> Ahg887948 jgi|Araly1|887948|Al_scaffold_0269_3
Length=621
Score = 800 bits (433), Expect = 0.0
Identities = 562/622 (90%), Gaps = 18/622 (3%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAACAGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaagaagt 499
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCG---AAGAAGAAGAAG- 421
Query 500 aggagaagtagaagaaatggaagaggtagaagaggttgaagaagaagt--a-ga--t-g- 552
| || | || |||||||||||||| ||||||||||||||| ||||||| | || | |
Sbjct 422 ATGA-A-GTCGAAGAAATGGAAGAAGTAGAAGAGGTTGAAAAAGAAGTTGAAGAAGTAGG 479
Query 553 a-a-gtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGAT 610
| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGAAGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGAGAT 539
Query 611 ACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGA 670
||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 540 ACCCAATGGTGAAATCCCCAGTGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGGCAA 599
Query 671 GAAACCAGATTTTCCCATTTAG 692
|||||||||| | |||||||||
Sbjct 600 GAAACCAGATATGCCCATTTAG 621
> Ahg887947 jgi|Araly1|887947|Al_scaffold_0269_2
Length=630
Score = 791 bits (428), Expect = 0.0
Identities = 562/625 (90%), Gaps = 15/625 (2%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaaga--a 497
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCGAAGAAGAAGAAGATGA 425
Query 498 -gtaggagaagtagaagaaatggaagaggtagaaga-g--gttgaagaagaagtaga--t 551
|||| |||| | |||||| | |||||||| ||||| | |||||||||| || ||| |
Sbjct 426 AGTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGAAGTAGGAGAAGT 485
Query 552 -g-a-ag-taggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGA 607
| | || ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 486 AGGAGAGGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGA 545
Query 608 GATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGG 667
|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 546 GATACCCAATGGTGAAATCCCCAATGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGG 605
Query 668 CGAGAAACCAGATTTTCCCATTTAG 692
| ||||||||||| | |||||||||
Sbjct 606 CAAGAAACCAGATATGCCCATTTAG 630
> Ahg342719 jgi|Araly1|342719|fgenesh1_pg.C_scaffold_3002482
Length=630
Score = 791 bits (428), Expect = 0.0
Identities = 562/625 (90%), Gaps = 15/625 (2%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 TACGAGGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaaga--a 497
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCGAAGAAGAAGAAGATGA 425
Query 498 -gtaggagaagtagaagaaatggaagaggtagaaga-g--gttgaagaagaagtaga--t 551
|||| |||| | |||||| | |||||||| ||||| | |||||||||| || ||| |
Sbjct 426 AGTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGAAGTAGGAGAAGT 485
Query 552 -g-a-ag-taggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGA 607
| | || ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 486 AGGAGAGGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGA 545
Query 608 GATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGG 667
|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 546 GATACCCAATGGTGAAATCCCCAATGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGG 605
Query 668 CGAGAAACCAGATTTTCCCATTTAG 692
| ||||||||||| | |||||||||
Sbjct 606 CAAGAAACCAGATATGCCCATTTAG 630
> Ahg342718 jgi|Araly1|342718|fgenesh1_pg.C_scaffold_3002481
Length=594
Score = 743 bits (402), Expect = 0.0
Identities = 512/563 (91%), Gaps = 16/563 (3%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaagaagt 499
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCG---AAGAAGAAGAAG- 421
Query 500 aggagaagtagaagaaatggaagaggtagaagaggttgaagaagaagtaga--t-g-a-a 554
| || | ||||||||||||||||| ||||||||||||||||||||||| || | | | |
Sbjct 422 ATGA-A-GTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGTAGGAGA 479
Query 555 -gtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGATACC 613
|||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 480 AGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTT-TGCAGAGATACC 538
Query 614 AAATGGTGAAATCTCCAATGGAG 636
|||||||||||| |||||||||
Sbjct 539 CAATGGTGAAATCCCCAATGGAG 561
> Ahg359469 jgi|Araly1|359469|fgenesh1_pg.C_scaffold_269000004
Length=621
Score = 725 bits (392), Expect = 0.0
Identities = 511/566 (90%), Gaps = 18/566 (3%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaagaagt 499
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCG---AAGAAGAAGAAG- 421
Query 500 aggagaagtagaagaaatggaagaggtagaagaggttgaagaagaagt--a-ga--t-g- 552
| || | ||||||||||||||||| ||||||||||||||| ||||||| | || | |
Sbjct 422 ATGA-A-GTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAAAAGAAGTTGAAGAAGTAGG 479
Query 553 a-a-gtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGAT 610
| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGAAGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGAGAT 539
Query 611 ACCAAATGGTGAAATCTCCAATGGAG 636
||| |||||||||||| ||| |||||
Sbjct 540 ACCCAATGGTGAAATCCCCAGTGGAG 565
> Ahg342720 jgi|Araly1|342720|fgenesh1_pg.C_scaffold_3002483
Length=630
Score = 710 bits (384), Expect = 0.0
Identities = 510/569 (90%), Gaps = 15/569 (3%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
Query 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
Query 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA 365
Query 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaaga--a 497
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
Sbjct 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCGAAGAAGAAGAAGATGA 425
Query 498 -gtaggagaagtagaagaaatggaagaggtagaaga-g--gttgaagaagaagtaga--t 551
|||| |||| | |||||| | |||||||| ||||| | |||||||||| || ||| |
Sbjct 426 AGTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGAAGTAGGAGAAGT 485
Query 552 -g-a-ag-taggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGA 607
| | || ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 486 AGGAGAGGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGA 545
Query 608 GATACCAAATGGTGAAATCTCCAATGGAG 636
|||||| |||||||||||| |||||||||
Sbjct 546 GATACCCAATGGTGAAATCCCCAATGGAG 574
> Ahg342721 jgi|Araly1|342721|fgenesh1_pg.C_scaffold_3002484
Length=663
Score = 590 bits (319), Expect = 6e-168
Identities = 393/426 (92%), Gaps = 15/426 (4%)
Strand=Plus/Plus
Query 276 TATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGAAGCTGATTTTAGAAAG 335
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 244 TATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGAAGCTGACTTTAGGAAG 303
Query 336 TATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGAGACAACAACAATTGAT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGAGACAACAACAATTGAT 363
Query 396 GGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTATGCAGACCCGGATGCT 455
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 364 GGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTATGCAGACCCGGATGCT 423
Query 456 TCGTTTGTAGACCCGCCACAATGCATTGTTgaagaagaagaagtaggagaagtagaagaa 515
|||||| ||||||||||||||||||| | |||||||||||| | || | |||||||||
Sbjct 424 TCGTTTCTAGACCCGCCACAATGCATCG---AAGAAGAAGAAG-ATGA-A-GTAGAAGAA 477
Query 516 atggaagaggtagaagaggttgaagaagaagt--a-ga--t-g-a-a-gtaggagaagta 566
|||||||| ||||||||||||||||||||||| | || | | | | |||| |||||||
Sbjct 478 ATGGAAGAAGTAGAAGAGGTTGAAGAAGAAGTTGAAGAAGTAGGAGAAGTAGAAGAAGTA 537
Query 567 gaagaagaacaagaagagGTCATAGATTCAGCTTCTGCAGAGATACCAAATGGTGAAATC 626
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 538 GAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCTGCAGAGATACCCAATGGTGAAATC 597
Query 627 TCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGAGAAACCAGATTTTCCC 686
||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||
Sbjct 598 CCCAATGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGGCAAGAAACCAGATATGCCC 657
Query 687 ATTTAG 692
||||||
Sbjct 658 ATTTAG 663
Score = 235 bits (127), Expect = 3e-61
Identities = 173/195 (89%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
Query 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
Query 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
Query 260 CCCATCTTTTTACAA 274
||||||||| ||||
Sbjct 186 ACCATCTTTT-ACAA 199
> Ahg887404 jgi|Araly1|887404|Al_scaffold_0215_2
Length=489
Score = 499 bits (270), Expect = 1e-140
Identities = 311/330 (94%), Gaps = 5/330 (2%)
Strand=Plus/Plus
Query 364 TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGC 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 164 TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGC 223
Query 424 CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTG 483
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 224 CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCA--- 280
Query 484 TTgaagaagaagaagtagga-gaagtagaagaaatggaagaggtagaagaggttgaagaa 542
| ||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||
Sbjct 281 TCGAAGAAGAAGAAG-AAGATGAAGTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAA 339
Query 543 gaagtagatgaagtaggagaagtagaagaagaacaagaagagGTCATAGATTCAGCTTCT 602
||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 340 GAAGTTGAAGAAGTAGGAGATGTAGAAGAAGAACAAGAAGAGGTCATTGATTCAGCTTCT 399
Query 603 GCAGAGATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGAT 662
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GCAGAGATACCCAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGAT 459
Query 663 GTTGGCGAGAAACCAGATTTTCCCATTTAG 692
|||||| ||||||||||| | |||||||||
Sbjct 460 GTTGGCAAGAAACCAGATATGCCCATTTAG 489
> Ahg359466 jgi|Araly1|359466|fgenesh1_pg.C_scaffold_269000001
Length=332
Score = 363 bits (196), Expect = 2e-99
Identities = 256/282 (91%), Gaps = 15/282 (5%)
Strand=Plus/Plus
Query 364 TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGC 423
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGC 60
Query 424 CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTG 483
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 61 CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCG 120
Query 484 TTgaagaagaagaagtaggagaagtagaagaaatggaagaggtagaagaggttgaagaag 543
|||||||||||| | || | ||||||||||||||||| |||||||||||||||||||
Sbjct 121 ---AAGAAGAAGAAG-ATGA-A-GTAGAAGAAATGGAAGAAGTAGAAGAGGTTGAAGAAG 174
Query 544 aagt--a-ga--t-g-a-a-gtaggagaagtagaagaagaacaagaagagGTCATAGATT 594
|||| | || | | | | |||| |||||||||||||||||||||||||||||| ||||
Sbjct 175 AAGTTGAAGAAGTAGGAGAAGTAGAAGAAGTAGAAGAAGAACAAGAAGAGGTCATTGATT 234
Query 595 CAGCTTCTGCAGAGATACCAAATGGTGAAATCTCCAATGGAG 636
||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 235 CAGCTTCTGCAGAGATACCCAATGGTGAAATCCCCAGTGGAG 276
> Ahg951943 jgi|Araly1|951943|scaffold_26900003.1
Length=579
Score = 110 bits (59), Expect = 2e-23
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 426 TGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTT 485
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 76 TGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCGAA 17
Query 486 gaagaagaaga 496
|||||||||||
Sbjct 16 GAAGAAGAAGA 6
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5