BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60850.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950837 jgi|Araly1|950837|scaffold_802724.1 1441 0.0
> Ahg950837 jgi|Araly1|950837|scaffold_802724.1
Length=980
Score = 1441 bits (780), Expect = 0.0
Identities = 917/981 (93%), Gaps = 18/981 (2%)
Strand=Plus/Plus
Query 108 TCTTTATCATCATCTCTTCGAAATGCAAGATATTCATGATTTCTCCATGAAcggagttgg 167
||||||||||| ||||| |||||||||||||||||||||| ||| |||| |||||||||
Sbjct 1 TCTTTATCATC-TCTCTAAGAAATGCAAGATATTCATGATTACTCGATGACCGGAGTTGG 59
Query 168 tggtgggggaggaggaggagggaggtttttcggtggaggaatcggcggcggaggaggtgg 227
||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 60 CGGTGGAGGAGGTGGAGGAGGGAGGTTTTTCGGTGGAGGAATGGGCGGTGGAGGAGGTGG 119
Query 228 tgatcgaaggaTGAGAGCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 287
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATCGGAGGATGAGAGCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 179
Query 288 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 239
Query 348 GCCTCGTCACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGTGGTGTTCTCCGTAA 407
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GCCTCGACACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGCGGTGTTCTCCGTAA 299
Query 408 CGTTCCCGTCGGAGGTGGTTGCCGGAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 467
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CGTTCCCATCGGAGGTGGTTGCCGAAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 359
Query 468 GTCGTCATCAGCCGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 527
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCGTCCTCAGCTGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 419
Query 528 GAGTACAGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACCGCTTCTAACTCTACCAC 587
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 420 GAGTACGGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACTGCTTCCAACTCTACCGC 479
Query 588 CGTCGCCGCCGTCTCCGTCACCGCGGCGGCGGAAGTTGCTTCGTCGGTTATTCCAGG-T- 645
|||| ||||||||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct 480 CGTCCCCGCCGTCTCCGTCACCGCGGCGGCAGAGGTTGCTTCGTCGGTTATTCCCGGGTC 539
Query 646 --TT-T----G-----A-TATGCCTAATATGAAAATTTACGGTAACGGGATCGAGTGGTC 692
|| | | | |||||||||||||||| | ||||| |||||||||||||||||
Sbjct 540 GGTTATTCCCGGTTTTAATATGCCTAATATGAAACTGTACGGGAACGGGATCGAGTGGTC 599
Query 693 GACGTTACTTGGACAAGGCTCATCGGCCGGTGGTGTTTTCTCGGAGATCGGTGGTTTTCC 752
||||||||| |||||||||||||||| |||||| |||||||| |||||||| |||||| |
Sbjct 600 GACGTTACTCGGACAAGGCTCATCGGACGGTGGAGTTTTCTCTGAGATCGGGGGTTTTAC 659
Query 753 GGCGGTTTCAGCTATTGAAACTACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 812
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCGGCGTCGGCTATTGAAACGACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 719
Query 813 TGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAACAGTTTGGAGATCGAACGGC 872
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAGCAGTTTGGAGATCGAACGGC 779
Query 873 TCAGGTTGAGTTTCAAGGAAGATCTTCGGATCCGAATATGGGATTTGAACCGTTGGATTG 932
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TCAGGTTGAGTTTCAAGGAAGATCTTCTGATCCGAATATGGGATTTGAACCGTTGGATTG 839
Query 933 GGGAAGTGGCGGTGGAGATCAAACACTGTTTGATTTAACCAGTACCGTTGATCATGCATA 992
|||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 840 GGGAAGTGGCGGAGGAGATCAAACACTGTTTGATCTAACCAGCACCGTTGATCATGCATA 899
Query 993 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAGTGGTCTCTACCTTCCTTG 1052
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAATGGTCTCTACCTTCCTTG 959
Query 1053 ATTCT--GATCATAGCTTCTT 1071
||||| ||||||||||||||
Sbjct 960 ATTCTCTGATCATAGCTTCTT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5