BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60860.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950838 jgi|Araly1|950838|scaffold_802725.1 1051 0.0
Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1 636 0.0
Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871 339 3e-92
> Ahg950838 jgi|Araly1|950838|scaffold_802725.1
Length=694
Score = 1051 bits (569), Expect = 0.0
Identities = 645/683 (94%), Gaps = 0/683 (0%)
Strand=Plus/Plus
Query 120 AACCTCACAATGGCCGCATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTG 179
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 12 AACCTCACAATGGCGGCATATAGAGCCGACGAAGACTACGATTACCTCTTCAAGGTTGTG 71
Query 180 TTAATTGGAGACTCCGGCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGCGCAACGAG 239
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 72 TTAATTGGAGATTCCGGTGTCGGAAAATCCAACCTCCTTTCTCGATTCACGCGAAACGAG 131
Query 240 TTCAGTCTCGAATCTAAATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTC 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 132 TTCAGTCTCGAATCTAAATCCACGATCGGTGTCGAATTCGCCACTCGTAGCATCCATGTC 191
Query 300 GATGATAAGATCGTCAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCA 359
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 192 GATGATAAGATCGTCAAAGCCCAGATTTGGGATACCGCCGGCCAAGAGAGATATCGAGCA 251
Query 360 ATCACAAGTGCATATTACAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGA 419
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 ATCACAAGTGCATACTACAGAGGAGCTGTAGGAGCATTGCTTGTGTACGATGTCACAAGA 311
Query 420 CATGTGACGTTTGAGAACGTTGAAAGATGGTTAAAGGAGCTTCGAGATCATACAGATGCC 479
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 312 CATGTGACATTTGAGAACCTTGAGAGATGGTTAAAGGAGCTTCGAGATCATACAGATTCC 371
Query 480 AATATCGTCATCATGTTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCG 539
|| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 372 AACATTGTCATCATGTTTGTCGGGAACAAAGCCGATCTCCGTCACCTACGAGCTGTTTCC 431
Query 540 ACTGAAGACGCTAAGGCTTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCT 599
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 432 ACTGAAGACGCTAAGGCTTTTGCGGAGAGAGAGAACACTTTCTTCATGGAGACATCTGCT 491
Query 600 CTCGAATCGATGAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTG 659
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 492 CTCGAATCCATGAACGTCGAGAATGCTTTCACTGAAGTGCTTTCTCAGATTTACCGTGTG 551
Query 660 GTTAGCCGGAAAGCGTTGGATATAGGAGACGACCCGGCTGCTCTTCCCAAAGGACAGACC 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 GTTAGCCGGAAAGCGTTGGATATAGGAGATGACCCGGCTGCTCTTCCCAAAGGACAGACC 611
Query 720 ATCAATGTCGGATCGAAAGACGATGTCTCTGCGGTGAAAAAGGTTGGTTGCTGCTCAAAT 779
||||| || || || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 612 ATCAACGTTGGGTCTAAAGACGATGTCTCTGCCGTTAAAAAGGTTGGTTGCTGCTCAAAT 671
Query 780 TGATGGTACGTTCGACTTTCAAG 802
||||| ||| |||||||||||||
Sbjct 672 TGATGCTACTTTCGACTTTCAAG 694
> Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1
Length=862
Score = 636 bits (344), Expect = 0.0
Identities = 557/661 (84%), Gaps = 10/661 (2%)
Strand=Plus/Plus
Query 128 AATGGCCGCATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTGTTAATTGG 187
|||||| || |||||||| ||||| || ||||||| ||||| ||| || || ||||| ||
Sbjct 80 AATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGG 139
Query 188 AGACTCCGGCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGCGCAACGAGTTCAGTCT 247
|| |||||||| || |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 140 TGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCACGCGCAACGAGTTCAGCCT 199
Query 248 CGAATCTAAATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTCGATGATAA 307
||| ||||||||||| ||||| || ||||||||||| || ||||| ||||||||||| ||
Sbjct 200 CGAGTCTAAATCCACCATCGGCGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAA 259
Query 308 GATCGTCAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCAATCACAAG 367
|||||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct 260 AATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAGAGATACCGAGCAATCACAAG 319
Query 368 TGCATATTA-CAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGACATGTGA 426
|| || || | |||||||||||||||| |||||||| || ||||| || | |||||||
Sbjct 320 CGCTTACTATC-GAGGAGCTGTAGGAGCTTTGCTTGTTTATGATGTTACTCGGCATGTGA 378
Query 427 CGTTTGAGAACGTTGAAAGATGGTTAAAGGAGCTTC-GAGATCATACAGATGCCAATATC 485
| |||||||||||||| |||||||| |||||||| | ||||||| ||||| ||||| ||
Sbjct 379 CATTTGAGAACGTTGAGAGATGGTTGAAGGAGCT-CAGAGATCACACAGAGGCCAACATT 437
Query 486 GTCATCATG-TTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCGACTGA 544
|| |||||| || |||||||| || |||||||| ||||||||| |||||||||| || ||
Sbjct 438 GTGATCATGCTT-GTTGGGAATAAGGCGGATCTACGTCACCTAAGAGCTGTTTCAACCGA 496
Query 545 AGACGCTAAGGC-TTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCTCTCG 603
||| ||||| || ||| || |||||||||||||| ||||||||||||||||| || ||||
Sbjct 497 AGATGCTAAAGCCTTT-GCAGAGAGAGAGAACACATTCTTCATGGAGACATCTGCACTCG 555
Query 604 AATCGAT-GAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTGGTT 662
|| | || |||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct 556 AAGC-ATTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAATATACCGTGTGGCA 614
Query 663 AGCCGGAAAGCGTTGGATATAGGAGACGACCCGGCTGCTCTTCCCAAAGGACAGACCATC 722
||| ||| || |||||||| || || || |||||| | ||||| ||||| |||| ||
Sbjct 615 AGCAAGAAGGCCTTGGATATTGGTGATGATCCGGCTACCCTTCCTAAAGGCCAGAGTATT 674
Query 723 AATGTCGGATCGAAAGACGATGTCTCTGCGGTGAAAAAGGTTGGTTGCTGCTCAAATTGA 782
|||||||| || || || ||||| |||| ||| || ||||||||||||||||||| ||||
Sbjct 675 AATGTCGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGTTGCTGCTCAAGTTGA 734
Query 783 T 783
|
Sbjct 735 T 735
> Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871
Length=657
Score = 339 bits (183), Expect = 3e-92
Identities = 469/607 (77%), Gaps = 19/607 (3%)
Strand=Plus/Plus
Query 136 CATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTGTTAATTGGAGACTCCG 195
|||||| ||| || ||||| ||||||||||||||||| ||||| |||| ||||| ||||
Sbjct 8 CATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGAGATTCCG 67
Query 196 GCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGC-GCAACGAGTTCAGTCTCGAATCT 254
| || || ||||| || || || || |||||||| | | ||||| || || | ||| ||
Sbjct 68 GTGTCGGGAAATCAAATCTGCTATCCCGATTCAC-CAGAAACGATTTTAGCCACGACTC- 125
Query 255 A-AATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTCGATGATAAGATCGT 313
| || || |||||||| || || ||||| ||||||||||| || || || ||||| ||
Sbjct 126 ACGCTCGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTGGACGACAAGATTGT 185
Query 314 CAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCAATCACAAGTGCATA 373
|||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || || ||
Sbjct 186 CAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGCGCGTA 245
Query 374 TTA-CAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGACATGTGACGTTTG 432
|| | ||||||| || || ||||| || || ||||| || ||| | || ||||| || |
Sbjct 246 CTATC-GAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGACATTCG 304
Query 433 AGAACGTTGAAAGATGGTTAAAGGAGCTTCGAGATCATACAGATGCCAATATC-GTCATC 491
|||||||||| |||||| |||||||||| |||| || || || || || | | || ||
Sbjct 305 AGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACA-CTGTGATA 363
Query 492 ATGTTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCGACTGAAGACGCT 551
||| |||| || |||||||| ||| | |||||| ||||| | || || ||||| | |
Sbjct 364 ATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAAG-T 422
Query 552 -AAGGCTTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCTCTCGAATCGAT 610
|| | ||| || ||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 423 GAAAGATTTTGCAGAGAGAGAGAACACTTTCTTCATGGAGACTTCAGCACTCGAAGCTAT 482
Query 611 GAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTGGTTAGCCGGAA 670
|| || || || |||||||| || || ||| ||||||||||| | || |||||| |||
Sbjct 483 AAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTTAGCAAGAA 542
Query 671 AGCG-TTGGATA-TAGGAGACGA-CC--CGGCTGCTCTTCCC-AAAGGACAGACCATCAA 724
|| ||| || | ||||| || || | ||||| || || |||||||||| || ||
Sbjct 543 GGCTCTTG-ATGCT-GGAGATGATCCTACCACTGCT-TTGCCTAAAGGACAGATGATTAA 599
Query 725 TGTCGGA 731
||| |||
Sbjct 600 TGTAGGA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5