BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60870.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496236 jgi|Araly1|496236|fgenesh2_kg.8__2052__AT5G60870.1 2043 0.0
> Ahg496236 jgi|Araly1|496236|fgenesh2_kg.8__2052__AT5G60870.1
Length=1364
Score = 2043 bits (1106), Expect = 0.0
Identities = 1278/1362 (94%), Gaps = 8/1362 (1%)
Strand=Plus/Plus
Query 9 CAACAATGGCAGCGTTAAGCCACCGCTTACGTAGT-TTCACACGCCGCTTCTCCTCCACC 67
|||||||||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||
Sbjct 1 CAACAATGGCAGCGTTAAGCAACCGCCTACGTA-TCTTCACGCGCCGCTTCTCCTCCACC 59
Query 68 CGGACCACTCAAAGAAGCGGCGGAGGAGCCAACACCAAGGTACCTATTCTCTACACAAGC 127
||||| ||||||||||| |||||||||| | ||||||||| || | ||||||||||||
Sbjct 60 CGGACAACTCAAAGAAGTAGCGGAGGAGCTACCACCAAGGTGCCCACACTCTACACAAGC 119
Query 128 CCAGACATCGACTCCGATCCCGTCACTCTCCAGCTCTTCTCGTGGGGACGTGGCGCGTCA 187
||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 120 CCAGATATCGACTCGGATCCCATCACTCTCCAGCTCTTCTCGTGGGGACGAGGCGCATCA 179
Query 188 GGTCAGCTCGGCGGCGGAATCGAGGAGATTCGAATGTATCCGTCTCCAGTCGCTAATCTT 247
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 GGTCAACTCGGCGGCGGAATCGAGGAGATTCGAATGTATCCGTCTCCGGTCGCTAATCTT 239
Query 248 CTCTTTCGCTCTGATCAATCCTTCTCTCTCGCTCAAACTCCTGGAAGAATCGACGCAGAT 307
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 240 CTCCTTCGCTCCGATCAATCCTTCTCTCTCGCCCAAACTCCTGGAAGAATCGACGCCGAT 299
Query 308 TCTTCCAGTTT-TCGAATTGGAATCTCTTGCGGCTTGTTCCATTCTGGTTTAACTATAGA 366
|| || ||||| || |||||||||||||||||||| |||||||| ||| |||| || |
Sbjct 300 TCATCGAGTTTCCCG-ATTGGAATCTCTTGCGGCTTTTTCCATTCGGGTCTAACCATCGG 358
Query 367 CGGAGATCTATGGATTTGGGGGAAAGGTGACGGAGGAAGGTTAGGGTTTGGCCAAGAGAA 426
|||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 359 TGGAGATCTATGGATTTGGGGCAAAGGTGACGGAGGTAGGCTAGGGTTTGGCCAAGAGAA 418
Query 427 TTCGGTTTTCGTCCCCAATTTAAATCCGCTTTTTGAGGAACATTCGATTCGATGTATAGC 486
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 419 TTCGGTGTTCGTCCCCAATTTAAACCCGCTTTTCGAGGAACATTCGATTCGATGTATTGC 478
Query 487 TCTTGGTGGTTTGCATTCAGTAGCTTTAACACATCAAGGAGATGTATTCACTTGGGGTTA 546
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 TCTTGGTGGTTTGCATTCAGTAGCTTTAACACATCAAGGAGAGGTATTCACTTGGGGTTA 538
Query 547 TGGTGGTTTTGGAGCGCTTGGTCATAAGGTTTACACTAGAGAACTCGTTCCTCGACGTGT 606
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGTGGTTTTGGAGCGCTTGGACATAAGGTTTACACTAGAGAACTCGTTCCTCGACGTGT 598
Query 607 TGACGACTCTTGGGATTGCAAAATCTCTGCCATTGCTACTAGTGGAACTCATACCGCTGC 666
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 TGACGGCTCTTGGGATTGCAAAATCTCTGCCATTGCTACCAGTGGAACTCATACCGCTGC 658
Query 667 TATTACTGAATCAGGGGAGCTTTATATGTGGGGAAGAGAAGAAGGAGATGGTAGATTAGG 726
|||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TATTACCGAATCAGGAGAGCTGTATATGTGGGGAAGAGAAGAAGGGGATGGTAGATTAGG 718
Query 727 ACTCGGGCCAGGCCGAGGACCAAACGAAGGTGGTGGGCTTAGTGTTCCTTCAAAGGTCAA 786
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTTGGGCCAGGTCGAGGACCAAACGAAGGTGGTGGGCTTAGTGTTCCTTCAAAGGTCAA 778
Query 787 AGCTTTAACAGTTCCTGTAGCCTCTGTCTCATGTGGTGGTTTTTTCACAATGGCTCTTAC 846
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTTTAACAGTTCCCGTAGCCTCTGTCTCATGTGGTGGTTTTTTCACAATGGCTCTTAC 838
Query 847 AAAAGAGGGACAACTCTGGAACTGGGGAGCAAATTCCAATTATGAACTCGGACGCGGTGA 906
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 839 AAAAGAGGGACAACTCTGGAACTGGGGAGCAAATTCCAATTATGAGCTCGGGCGCGGTGA 898
Query 907 TAACTTGGGAGGTTGGGAACCAATGCCGGTTCCCAGTTTAGA-AGGGGTTCGTATTACCC 965
|||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||
Sbjct 899 TAACTTGGGAGGTTGGGAACCATTGCCGGTTCCCAGTTTAGATAGTG-TTCGTATTACCC 957
Query 966 AGATTGCGTGCGGTGGATATCATTCTCTTGCCTTAACCGAGGAAGGTAAAGTACTCTCAT 1025
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGATTGCTTGCGGTGGATATCATTCTCTTGCCTTAACCGAGGAAGGTAAAGTACTCTCAT 1017
Query 1026 GGGGCCACGGTGGCCACGGCCAGTTGGGTAGTTCCTCGCTGCGAAACCAGAAAGTTCCTA 1085
|||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1018 GGGGCCACGGTGGCCATGGCCAGTTGGGTAATTCCTCGTTGCGAAACCAGAAAATTCCTA 1077
Query 1086 CTGAAATCGAAGCATTAGCTGACAAAAAGATAGTCTTCATCGCTAGTGGAGGTTCCTCTT 1145
| |||||||||||||||| || |||||||| |||||||||||| ||||||||||||| |
Sbjct 1078 CAGAAATCGAAGCATTAGAAGATAAAAAGATCGTCTTCATCGCTTGTGGAGGTTCCTCGT 1137
Query 1146 CTGCAGCGATAACAGATGGGGGTGAACTCTGGATGTGGGGAAACGCTAAAGATTTCCAGC 1205
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTGCAGCGATAACAGATGGTGGTGAACTCTGGATGTGGGGAAACGCTAAAGATTTCCAGC 1197
Query 1206 TAGGAGTTCCAGGTCTCCCTGAGATCCAAACTACTCCGGTCGAAGTCAATTTCTTAACCG 1265
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1198 TAGGAGTTCCAGGTCTCCCGGAGATCCAAACAACTCCGGTCGAAGTCAATTTCTTAACCG 1257
Query 1266 AAGAAGATGAGTGTCAACCACACAAGGTTATCTCAATTTCCATTGGTGCTTCTCATGCTC 1325
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1258 AAGAAGATGAGCGTCAACCACACAAGGTTATCTCAGTTTCCATTGGTGCTTCACATGCTC 1317
Query 1326 TGTGTTTAGTCTCAAGATCACCTTAAGTAA-CACTTGGATAG 1366
||||||| ||||||||||||| |||| ||| ||||| |||||
Sbjct 1318 TGTGTTTGGTCTCAAGATCACATTAA-TAAACACTTTGATAG 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5