BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60880.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950840 jgi|Araly1|950840|scaffold_802727.1 1293 0.0
> Ahg950840 jgi|Araly1|950840|scaffold_802727.1
Length=836
Score = 1293 bits (700), Expect = 0.0
Identities = 790/832 (95%), Gaps = 12/832 (1%)
Strand=Plus/Plus
Query 63 AAACATAACAGCCATGGCTTCACAGTGGACAATACCAAAACTTGTCACTTGGAGAGTCAG 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AAACATAACAGCCATGGCTTCACAGTGGACAATACCAAAACTTGTCACTTGGAGAGTCAA 67
Query 123 AGATTGGGCTTCTTGTTTCTTGGCTTGCAAGATTCCTCTAGACGGAGATGAAGATGGAGC 182
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 AGATTGGGCTTCCTGTTTCTTGGCTTGCAAGATTCCTCTAGACGTAGATGAAGATGGAGT 127
Query 183 TAATAATAATGGAAACACTACGAACAACAATAATCTAACGTTCAAAAGGATTAAGAGGAA 242
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 128 TAATAACAATGGAAACACTACGAACAACAATAATCTAACGTTCAAGAGGATTAAGAGGAA 187
Query 243 GATTAAA-AGTACTAAGAAGAAGAGATCAGAGAGGAAACTCAGCCTAAGCCCACCAGGTA 301
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 188 GA-TAAAGAGTACTAAGAAGAAGAGATCAGAGAGGAAACTCAGTCTAAGCCCACCGGGTA 246
Query 302 CACGTCATCATCATCTTCATCTAAGAAGCAGTAGCGTTTCTCCGACGACGTCGGGGTCTC 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 247 CACGTCATCATCATCTTCATCTAAGAAGCAGTAGCGTTTCTCCGACGACGTCGGCGTCTC 306
Query 362 AGCACCGGCGCTTGAGCTGGCCTCAGCCCCCTGTCTCAGAAGAATCTGGATTCATTGTCT 421
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 307 AACACCGGCGCTTGAGCTGGCCTCAGCCACCTGTCTCAGAAGAATCTGGTTTCATTGTCT 366
Query 422 TCTGCTTCGATCGCGAAGATGGTGG-TTTCGATGTGGTTAAAGAGGGTAAACAAGAGAAG 480
|||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |
Sbjct 367 TCTGCTTCGATCGCGAAGATGGAGGATTT-GATGTGGTTAAAGAGGGTAAACAAGAGAGG 425
Query 481 AAAGAGACGGAATCGTCCTCGGAAAAGTCACCGAGGACGGTGAATCGTAAGCTTATATAT 540
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AAAGAGACCGAATTGTCGTCGGAAAAGTCACCGAGGACGGTGAATCGTAAGCTTATATAT 485
Query 541 ---GGAGACCAAGGAGTAGGAGGAACAGAGAAGAATAACTCGCCGGAGACTAAAGGGACA 597
||||||||||||||||||| |||||| |||||||| |||||||||| |||||| |||
Sbjct 486 GGAGGAGACCAAGGAGTAGGAGAAACAGAAAAGAATAAGTCGCCGGAGAATAAAGGAACA 545
Query 598 GAACAAGATCAGAACGATAACACTTCATGTCAAGGAACTAAAGATGTCTCTAGTGATGTT 657
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 546 GAACAAGATCAGAACGATAACACTTCATGTCAAGAAACTAAAGATGTCTCTTGTGATGTT 605
Query 658 ACAGAAAG-AACC--A-AAGAAGAAGAAGACATTGATGCCTCTGATAAATCTAGCGGGTC 713
||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ACA-CAAGAAACCGAAGAAGAAGAAGAAGACATTGATGCCTCTGATAAATCTAGCGGGTC 664
Query 714 TAGTCACTCAGATGAAGGAAGGGGATCTTTTGCATTTCCCATATTAGGAGTAGAGTGGAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TAGTCACTCAGATGAAGGAAGGGGATCTTTTGCATTTCCCATATTAGGAGTAGAGTGGAT 724
Query 774 GGGGAGTCCTGCTAAGATGCCTGAATCAGATGACTTGTCTCCCAAGAAACAAAAGCCAGT 833
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 GGGGAGCCCTGTTAAGATGCCTGAATCAGATGACTTGTCTCCCAAGAAACAAAAGCCGGT 784
Query 834 TGCTTTAGGGTTCCAATGTTGTAGATTCTGAAAAAGATAACATCCTACAAGT 885
|||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 785 TGCTTTAGGGTTCCAATGCTGTAGATTCTGAAAAAGATAACATTCTACAAGT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5