BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60890.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496240 jgi|Araly1|496240|fgenesh2_kg.8__2056__AT5G60890.1 1753 0.0
Ahg488320 jgi|Araly1|488320|fgenesh2_kg.6__1454__AT5G14750.1 65.8 8e-10
> Ahg496240 jgi|Araly1|496240|fgenesh2_kg.8__2056__AT5G60890.1
Length=1274
Score = 1753 bits (949), Expect = 0.0
Identities = 1094/1163 (94%), Gaps = 13/1163 (1%)
Strand=Plus/Plus
Query 184 TTTCGTGTTAATTTTATTTTAAAACAAAGGATTAAAGAGTCGTTCTTTCTTTTGGTAACA 243
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 120 TTTCTTGTTAATTTTATTTTAAAACAAAGGATTAAAGA---G-TCTTTCTTTTGGAAACA 175
Query 244 TGGAGCCTTAATGATCC-TTTGTTAGCTCTAGCTAGGATTTTACGTACTACTTAGGGTAT 302
||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 176 TGGAGCCTTAATGATCCTTTTGTTACCTCTAGCTAGGATTTTACGTACTAATTA-GGTAT 234
Query 303 TCAAACTAAAATAAAATCAAGAAGAAGAGC--AGAGAGATGGTGAGGACACCATGTTGCA 360
| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 235 TTAAACTAAAACAAAATCAAGAAGAAGAGCATAGAGAGATGGTGAGGACACCATGTTGCA 294
Query 361 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGATCAAAAGCTTATTGCTT 420
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 295 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGACCAAAAGCTAATTGCTT 354
Query 421 ATCTTCACCTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCTTCAACTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 414
Query 481 GATGTGGAAAGAGTTGTAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATGTGGAAAGAGTTGCAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 474
Query 541 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 534
Query 601 AGTGGGCCGCAATCGCCACTAGCTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 660
|||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 535 AGTGGGCCGCGATCGCCTCTAGTTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 594
Query 661 GGAACACAAATCTCAAGAAGCGGT-TGAAGCAAAAAGGCATCGATGCAATCACTCACAAA 719
|||||||||||||||||||||| | | || ||||||||| ||||| |||| |||||||||
Sbjct 595 GGAACACAAATCTCAAGAAGCG-TCTAAAACAAAAAGGCCTCGATCCAATTACTCACAAA 653
Query 720 CCGATCAATTCAACCGGTCAAACCGGTTTCGAACCAAAAGTAAATAAACCGGTATATTCA 779
|||||||||||||||||| |||| ||| | ||||||||| ||||||||||| ||||||
Sbjct 654 CCGATCAATTCAACCGGTAAAACTGGTCTGGAACCAAAAACCAATAAACCGGTTTATTCA 713
Query 780 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTTGAATTAAACCGG 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 714 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTGGAATTAAACCGG 773
Query 840 GA-CTTACTGACCGGGATCATCAGTGGAAACTCCACCGTCGCCGAAGATTCACAAAACTC 898
|| || ||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 774 GATCT-ACTAACCGGGATCATCAGTGGAAACTCTGCGGTCGCCGAAGATTCACAAAACTC 832
Query 899 CGGCGACGTTGATTCTCCGACCTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 833 CGGCGACGTTGATTCTCCGACTTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 892
Query 959 GATCAACACTACGACTACATATTCCGGCTTCTCCGACAACTGTTCTTTCACTGATGAATT 1018
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 893 GATCAACACTACGACTACATTTTCCGGCTTCTCCGACAACTGTTCTTTCACCGATGACTT 952
Query 1019 CAACGAATTCTTTAACAATGAAGAGATCTCCGATATTTACACGACTGTCGATAATTTTGG 1078
|||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 953 CAACGAATTCTTTAGCAATGAAGAGATCTCCGATATGTATACGACAGTCGATAATTTTGG 1012
Query 1079 GTTTATGGAAGAGTTAAAGAGTATTTTAAGCTACGGCGATGCCAGCGCCGGAGTTATTGA 1138
| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 1013 GATTATGGAGGAGTTAAAGGGTATTTTAAGCTACGGCGGTGCCGGCGCCGGAGTTATTGA 1072
Query 1139 AAATTCGCCGGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCCTGGAACGAAGA 1198
| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1073 AGATTCGCCAGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCTTGGAACGAAGA 1132
Query 1199 TGACAATATGGTTGGAGTCTTTGTCTGACGAGTCAGACTAAAATCAATCTTACGTTGGTT 1258
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1133 TGACAATATGGTTGGAGTCTTTGTCTAACGAGTCAGACTAAAACCAATCTTACGTTGGTT 1192
Query 1259 TTTTCTTTAATAAGCTGTGATAGATTCGTGTAATCGTCACGTAGTCAAAATAATGTGCTG 1318
||| ||||||||| |||||||||||| ||||| || |||||| ||| |||||||||||||
Sbjct 1193 TTTCCTTTAATAACCTGTGATAGATTGGTGTA-TCATCACGTGGTCGAAATAATGTGCTG 1251
Query 1319 TTGTAAAAATTAATAATAATAAA 1341
||||||||| |||||||||||||
Sbjct 1252 TTGTAAAAAATAATAATAATAAA 1274
Score = 202 bits (109), Expect = 6e-51
Identities = 117/121 (97%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 35 TCTAAACTCAATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 94
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTAAACTCGATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 60
Query 95 TGAGTACAATCTTCAGGTGTCTTCTAGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 154
|||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TGAGTACAGTCTTCAAGTGTCTTCTGGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 120
Query 155 T 155
|
Sbjct 121 T 121
> Ahg488320 jgi|Araly1|488320|fgenesh2_kg.6__1454__AT5G14750.1
Length=823
Score = 65.8 bits (35), Expect = 8e-10
Identities = 44/48 (92%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 463 AAAAAG-CTGGATTGAAGAGATGTGGAAAGAGTTGTAGATTGAGATGG 509
|||||| |||| || ||||||||||||||||||||||||||||| |||
Sbjct 136 AAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGGTGG 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5