BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60900.1
Length=2247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496241 jgi|Araly1|496241|fgenesh2_kg.8__2057__AT5G60900.1 3197 0.0
> Ahg496241 jgi|Araly1|496241|fgenesh2_kg.8__2057__AT5G60900.1
Length=2277
Score = 3197 bits (1731), Expect = 0.0
Identities = 2109/2286 (92%), Gaps = 48/2286 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCTCTTTCTTGTTCAATAATCCATCTGGTTCTTATTCTGCAACTACAAACAttt 60
||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||
Sbjct 1 ATGGGTTCTCTTTCTTGTTTAATAATCTATCTTGTTCTTGTTCTGCAACTACAAACATTT 60
Query 61 ttcgttttttCTCAAAACATCAGAAACGGCTCTGTTCCTGTCGGAGAATCTCTCACCGCT 120
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 TTTGTTTTTTCTCAAAACATCAGAAACGGCTCTGTTCCTGTTGGAGAATCTCTCACTGCT 120
Query 121 TCAGAGTCCCAACAAATCTCTAGTTCATGGCGTTCACCTTCCGGTGACTTTGCTTTCGGG 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCAGAGTCCCAACAAATCTCCAGTTCATGGCGTTCACCTTCAGGTGACTTTGCTTTCGGG 180
Query 181 TTCCGCAAGATCCAACCAAACGACGGTTTCACTCTCTCCATTTGGTTCGACAAGATTTCT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGCAAGATCCAACCAAACGATGGTTTCACTCTCTCCATTTGGTTCGACAAGATTTCT 240
Query 241 GACAAGACCATCGTGTGGCACGCACAAGCCGTCAACACAACCACCGGTCTTGTCCCTAAT 300
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||
Sbjct 241 GACAAGACCATCGTGTGGCACGCACAAGCCATCAACACATCCACTGGTCTTGTCCCTGAT 300
Query 301 GGTTCGAAGGTTACATTAACTGCAGATGGCGGTCTGGTTATCGCTGACCCTCGAGGTCAG 360
|||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GGTTCGAAAGTTACATTAACCGCAGATGGCGGTCTGGTTATCACTGACCCTAGAGGTCAG 360
Query 361 GAGCTGTGGAGAGCGTTGAGTGGTGGCTCTGTTTCTCGAGGGCG-ATTTACTGACGACGG 419
|||||||||||| ||||||| ||||||||||||||||||||||| | | |||||||| ||
Sbjct 361 GAGCTGTGGAGATCGTTGAGAGGTGGCTCTGTTTCTCGAGGGCGCA-TAACTGACGAGGG 419
Query 420 AAACTTCGTTCTTTTCAGAGATGGGTCAGAAGATTCTGACGAGGTTCTATGGTCGAGC-T 478
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 420 AAACTTCGTTCTGTTCAGGGATGGGTCAGAAGATTCTGACGAGGTTCTATGGTCGA-CGT 478
Query 479 TTGAAAATCCCACCGACACTCTGTTACCTAATCAGAATATAGAAGTTGGAAGGAATCTGT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 TTGAAAATCCCACCGACACTCTGTTACCTAATCAGAATATAGAAGTTGGAAGTAATCTGT 538
Query 539 CATCACGTAGGACAGAGACGAGCTTCAAAAAAGGAAGATTCAGCCTACGTCTAGAG-GAT 597
|||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| | ||
Sbjct 539 CATCTCGTAGGACAGAGACAAGCTTCACGAAAGGAAGATTCAGCTTACGTCTAG-GTGAC 597
Query 598 GACGGAAATCTTCAGCTTCACTCTCTCAACGCCGAGACTGCCTCAGAATCAGACATATAC 657
||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 598 GACGGAAATCTTCAGCTTCTCACTCTCAACGCCGAGACTGTCTCAGAATCAGACATATAC 657
Query 658 TCTCAGTACTACGAAAGTAATACCAACGATCCAAACAACCCCGGGATTCAATTAGTTTTC 717
| ||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 658 TTTCACTACTACGAAAGTAACACGAACGATCCAAACAACCCCGGGATTCGATTAGTTTTC 717
Query 718 AACCAGTCAGGGGAAATATATGTTCTTCAAAGGAACAATTCAAGATTCGTCGTCAAAGAT 777
||||| |||||| | || ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 718 AACCAATCAGGGTACATGTATGTTCTTCAAAAGAACAATTCAAGATTCGTTGTCAAAGAG 777
Query 778 AGAGATCCGGA---TT-T------TTCTATCGCCGCGCCGTTCTACATTTCGAC---GGG 824
||||||||||| || | ||||||||||| ||||| |||||||||||| |||
Sbjct 778 AGAGATCCGGACTTTTCTAGCGACTTCTATCGCCGTGCCGTGCTACATTTCGACGGGGGG 837
Query 825 C--------------CCCGATGATGCACTTGGGAATATGGCTTGTGGGTATAATAATATA 870
| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 CAAGAGAATAGTGGGCACGATGATGCACTTGGGAATACGGCTTGTGGGTATAATAATATT 897
Query 871 TGTAGTTTAGGAAACAACAAGAGGCCAAAATGTGAGTGTCCTGAGAGGTTTGTGTTAAAG 930
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 898 TGTAGTTTAGGAAACAACCAGAGGCCAAAATGTGAATGTCCTGAGAGGTTTGTGTTGAAG 957
Query 931 GATCCGAGCAATGAGTATGGTGATTGTTTGCCAGATTTTGAGATGCAGACTTGTAGACCA 990
||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||
Sbjct 958 GATCCGAGCAATGAGTATGGTAATTGCTTGCCAGATTTTGAGATGCACACGTGTAGACCA 1017
Query 991 GAGAAC--C-AAACCGCAAACTCAGATGTGAATCTTTACGAGTTCATTACTTTAGAGAAG 1047
|||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1018 GAGAACAACAAAACCGCAAACTCAGATGTAAATCTTTATGAGTTCATTACTTTAGAGAAA 1077
Query 1048 ACGAATTGGCCGTTTGGGGATTATGAGAGTTATGCCAACTATGATGAAGAAAGATGTAAA 1107
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 ACGAATTGGCCGTTTGGGGATTATGAGAGTTACGCCAACTATGATGAAGAAAGATGTAAA 1137
Query 1108 GCTTCTTGTCTTAGCGATTGTTTATGTGCTGCGGTTATTTTTGGAACAAATCGGGATCTA 1167
||| ||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1138 GCTGCTTGTCTTAACGACTGTTTATGTGCTGCGGTTGTTTTTGGAACAAATCGTGATCTA 1197
Query 1168 AAATGTTGGAAGAAGAAGTTTCCCTTGTCTCACGGTGAAAGATCTCCACGTGGTGATAGT 1227
||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 1198 AAATGTTGGAAGAAGAAGTTTCCGTTGTCTCACGGTGAAAGAGCTCCGCGTGGTGATAGC 1257
Query 1228 GATACATTCATTAAGGTTCGAAACCGCTCCATCGCGGAT-GTTCCAGTTACCGGAAACAG 1286
||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||| ||
Sbjct 1258 GATACATTCATTAAGGTTCGAAACCGCGCCATCGCGGATAG-TCCAATTACCGGAAAGAG 1316
Query 1287 AGCGAAAAAACTTGACT-GGGTCTTTACATATGGAGAGCTTGCAGAGGCTACAAGAGATT 1345
| ||||||||||||| | | ||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1317 AACGAAAAAACTTGA-TCGAGTCTTTACATATGGAGAGCTTGCGGCGGCTACAGGAGATT 1375
Query 1346 TCACGGAAGAGCTTGGAAGAGGAGCCTTTGGTATAGTTTACAAAGGATATT-TAGAAGTT 1404
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1376 TCACGGAAGAGCTTGGAAGAGGAGCCTTTGGTATAGTTTACAAAGGAT-TTATAAAAGTT 1434
Query 1405 GCCGGTGGTTCTGAAGTTACCGTGGCTGTGAAGAAACTAGATCGTCTTGATTTAGATAAC 1464
||||||| ||||||||| || ||||||||||| ||| |||||||||||||| |||||||
Sbjct 1435 GCCGGTGATTCTGAAGTAACTGTGGCTGTGAAAAAATTAGATCGTCTTGATCAAGATAAC 1494
Query 1465 GAAAAAGAGTTCAAGAATGAGGTTAAAGTGATAGGTCAGATTCACCACAAGAACCTAGTG 1524
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1495 GAAAAAGAGTTCAAGAATGAGGTTAAAGTGATAGGTCGGATTCACCACAAGAACCTAGTG 1554
Query 1525 AGGCTCATTGGCTTCTGCAACGAAGGACAGAGCCAGATGATCGTCTATGAGTTTTTACCA 1584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1555 AGGCTCATTGGCTTCTGCAACGAAGGACAGAGCCAGATGATCGTCTACGAGTTTTTACCA 1614
Query 1585 CAAGGGACGCTAGCCAATTTTCTCTTCAGGCGTCCGAGGCCGAGCTGGGAAGATAGAAAG 1644
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 1615 CAAGGGACGCTAGCCAACTTTCTCTTCAGGCGTCCGAGAACGAGCTGGGAAGATAGAAGG 1674
Query 1645 AATATTGCG-GTGGCCATTGCTCGTGGAATCTTGTATCTACATGAAGAGTGCAGCGAGCA 1703
||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1675 AATATTGCGATTGG-CATTGCTCGTGGAATCTTGTATCTACACGAAGAGTGCAGCGAGCA 1733
Query 1704 GATCATACACTGTGACATAAAACCGCAGAACATACTCCTAGATGAGTATTACACTCCTCG 1763
|||||||||||| ||| |||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1734 GATCATACACTGCGACTTAAAACCGCAGAACGTACTTCTAGATGAGTATTACAGTCCTCG 1793
Query 1764 GATCTCGGATTTTGGTCTAGCAAAGCTTTTGTTGATGAACCAAACGTATACGCTCACTAA 1823
||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct 1794 GATCTCGGATTTTGGTCTAGCTAAGCTTTTGATGATGAACCAAACTTATACGCTCACGAA 1853
Query 1824 CATCCGTGGAACAAAAGGGTATGTGGCCCCTGAATGGTTCAGGAATAGCCCCATTACATC 1883
|||||| ||| |||||||||||||||| || |||||||||||||| || |||||||||||
Sbjct 1854 CATCCGCGGAGCAAAAGGGTATGTGGCACCGGAATGGTTCAGGAACAGTCCCATTACATC 1913
Query 1884 CAAAGTAGATGTTTATAGCTATGGAGTAATGCTTTTAGAAATCGTGTGCTGCAAGAAAGC 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 CAAAGTAGATGTTTATAGCTATGGAGTAATGCTTTTAGAAATCGTGTGCTGCAAGAAAGC 1973
Query 1944 CGTCGACCTTGAGGATAACGTGATTCTCATCAATTGGGCTTACGATTGTTTTCGACAAGG 2003
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1974 CGTCGATCTTGAGGATAACGTGATTCTCATCGATTGGGCTTACGATTGTTTTCGACATGA 2033
Query 2004 AAGGTTGGAAGATCTGACTGAGGACGATTCAGAGGCAATGAATGACATGGAA-ACTGTGG 2062
|||| ||||||||||||| |||||||||||||||||||||||||||||| || || ||||
Sbjct 2034 AAGGCTGGAAGATCTGACCGAGGACGATTCAGAGGCAATGAATGACATG-AAGACGGTGG 2092
Query 2063 AGAGATATGTGAAAATAGCGATATGGTGTATACAAGAAGAGCATGGGATGAGACCTAACA 2122
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 2093 GGAGATATGTGAAAATAGCGATATGGTGTATACAAGGAGAGCCTAGGATGAGACCTAACA 2152
Query 2123 TGAGAAATGTTACACAGATGCTTGAAGGTGTGATTCAAGTTTTTGATCCTCCAAATCCGT 2182
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2153 TGAGAAATGTTACACAGATGCTTGAAGGTGTGACTCAAGTTCATGATCCTCCAAATCCGT 2212
Query 2183 CTCCTTATAGCACTTTCACTTGGT-CTGATGAATCTTTGTCTAGTGATCCAGTGTCACTT 2241
||||||||||||||||||||| | ||||||| ||| ||||||||| | |||||||||||
Sbjct 2213 CTCCTTATAGCACTTTCACTTA-TACTGATGAGTCTATGTCTAGTGGTTCAGTGTCACTT 2271
Query 2242 GTTTGA 2247
||||||
Sbjct 2272 GTTTGA 2277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84598434145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5