BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60910.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950843 jgi|Araly1|950843|scaffold_802730.1 1498 0.0
Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 226 3e-58
Ahg921628 jgi|Araly1|921628|scaffold_102909.1 174 1e-42
Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 152 5e-36
Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 121 1e-26
> Ahg950843 jgi|Araly1|950843|scaffold_802730.1
Length=869
Score = 1498 bits (811), Expect = 0.0
Identities = 853/873 (98%), Gaps = 4/873 (0%)
Strand=Plus/Plus
Query 8 CACATTCATCAACACAAAAGATACCCagagagacataagaaagaaagagagagagagaTA 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACATTCATCAACACAAAAGATACCCAGAGAGACATAAGAAAGAAAGAGAGAGAGAGATA 60
Query 68 CTTTGGTCATTTCAGGGTTGTCGTTTCTCTCTCTTGTTCTTGAGATTTTGAAGAGAGAGA 127
|| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 61 CTCTGGTCATTTCAGGGTTGTCGTTTCTCTCTCTTGTTCTTGAGAGTTTG-A-AGAGAGA 118
Query 128 GATATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTT 187
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 G--ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTT 176
Query 188 ACTTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACTTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 236
Query 248 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCAAAGGCAAACTCTTCGAATATTCCACC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCAAAGGCAAACTCTTCGAATATTCCACC 296
Query 308 GACTCTTGCATGGAGAGGATACTTGAACGCTATGATCGCTATTTATATTCAGACAAACAA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCTTGCATGGAGAGGATACTTGAACGCTATGATCGCTATTTATATTCAGACAAACAA 356
Query 368 CTTGTTGGCCGAGACGTTTCACAAAGTGAAAATTGGGTTCTAGAACATGCTAAGCTCAAG 427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTGTTGGCCGAGACGTCTCACAAAGTGAAAATTGGGTTCTAGAACATGCTAAGCTCAAG 416
Query 428 GCAAGAGTTGAGGTACTTGAGAAGAACAAAAGGAATTTTATGGGGGAAGATCTTGATTCG 487
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCAAGAGTTGAAGTACTTGAGAAGAACAAAAGGAATTTTATGGGGGAAGATCTTGATTCG 476
Query 488 TTGAGCTTGAAGGAGCTCCAAAGCTTGGAGCATCAGCTCGATGCAGCTATCAAGAGCATT 547
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTGAGCTTGAAGGAGCTTCAAAGCTTGGAGCATCAGCTCGATGCAGCTATCAAGAGCATT 536
Query 548 AGGTCAAGAAAGAACCAAGCTATGTTCGAATCCATATCTGCGCTCCAGAAGAAGGATAAA 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGTCAAGAAAGAACCAAGCTATGTTCGAATCCATATCTGCGCTCCAGAAGAAGGATAAG 596
Query 608 GCCTTGCAAGATCACAACAATTCGCTTCTCAAAAAGATTAAGGAGAGGGAGAAGAAAACG 667
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCCTTGCAAGATCACAATAATTCGCTTCTCAAAAAGATTAAGGAGAGGGAGAAGAAAACG 656
Query 668 GGTCAGCAAGAAGGACAATTAGTCCAATGCTCCAACTCTTCTTCAGTTCTTCTGCCTCAA 727
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 GGTCAACAAGAAGGACAATTAGTCCAATGCTCCAACTCTTCTTCAGTTCTTCTGCCCCAA 716
Query 728 TACTGCGTAACCTCCTCCAGAGATGGCTTTGTGGAGAGAGTTGGGGGAGAGAACGGTGGT 787
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 717 TACTGCGTAACCTCCTCCAGAGATGGCTTTGTTGAGAGAGTTGGGGGAGAGAACGGCGGT 776
Query 788 GCATCGTCGTTGACGGAACCAAACTCTCTGCTTCCGGCTTGGATGTTACGTCCTACCACT 847
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 777 GCATCGTCGTTGACGGAACCAAACTCTCTTCTTCCGGCTTGGATGCTACGTCCTACCACT 836
Query 848 ACGAACGAGTAGAACTATCTCACTCTTTATAAT 880
||||| |||||||||||||||||||| ||||||
Sbjct 837 ACGAATGAGTAGAACTATCTCACTCTATATAAT 869
> Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1
Length=1228
Score = 226 bits (122), Expect = 3e-58
Identities = 187/217 (86%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 131 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 190
||||| || ||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 212 ATGGGGAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 271
Query 191 TTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 247
||||| ||| ||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 272 TTCTCGAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGT 328
Query 248 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGC-AAACTCTTCGAATATTCCA 305
|||||||| |||||||| | |||||||| ||| |||| |||||||||||||| ||||
Sbjct 329 GATGCTGAAGTTGCTCTTGTTGTCTTCTC--CCATAAGGGGAAACTCTTCGAATACTCCA 386
Query 306 CCGACTCTTGCATGGAGAGGATACTTGAACGCTATGA 342
| || ||||| ||||||| ||||||||||||||||||
Sbjct 387 CTGATTCTTGTATGGAGAAGATACTTGAACGCTATGA 423
> Ahg921628 jgi|Araly1|921628|scaffold_102909.1
Length=811
Score = 174 bits (94), Expect = 1e-42
Identities = 180/220 (82%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 126 GAGATATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAG 185
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 16 GAGAAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAG 75
Query 186 TTACTTTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTC 242
| || ||||| ||| ||||| | ||||| || | ||||||||||| |||||||||||||
Sbjct 76 TGACATTCTCTAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTC 132
Query 243 TCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGC-AAACTCTTCGAATA 300
| || ||||| |||||| | || || |||||||| ||| |||| ||| | ||||| ||
Sbjct 133 TTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTC--CCATAAGGGGAAATTGTTCGAGTA 190
Query 301 TTCCACCGACTCTTGCATGGAGAG-GATACTTGAACGCTA 339
|| | || ||||||||||||| | |||| ||||||||
Sbjct 191 CACCTCTGAATCTTGCATGGAGAAAG-TACTCGAACGCTA 229
> Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309
Length=807
Score = 152 bits (82), Expect = 5e-36
Identities = 143/172 (83%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 131 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 190
||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGAAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACT 60
Query 191 TTCT-CAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGCGA 249
|| | ||||||||||| ||||||||||||||| ||| ||||| | ||||| || || ||
Sbjct 61 TT-TGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGA 119
Query 250 TGCTGAGGTTGCTCT-CATCGTCTTCTCTT-CCAAAGGCAAACTCTTCGAAT 299
||||||| ||||||| | || | |||||| || ||||| |||| |||||
Sbjct 120 TGCTGAGATTGCTCTTC-TCATTTTCTCTAACCGT-GGCAAGCTCTACGAAT 169
> Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1
Length=924
Score = 121 bits (65), Expect = 1e-26
Identities = 136/169 (80%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 113 TTTT-GAAGA-GAGAGAGATATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACA 170
|||| | ||| |||| | | ||||||||||| || || | ||||||||||||||||||
Sbjct 21 TTTTGGGAGAGGAGA-AAAAATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACA 79
Query 171 AGATCAATAGGCAAGTTAC-TTTCTCAAAGAGAAGGTCTGGT-TTGCTCAAGAAAGC-TC 227
|||||||||||||||| || ||| ||||||||||| |||| || | |||||||| |
Sbjct 80 AGATCAATAGGCAAGTGACGTTTG-CAAAGAGAAGGAATGGTCTTT-TGAAGAAAGCAT- 136
Query 228 ATGAGATCTCTGTTCTCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTC 276
| ||| | || ||||| || ||||| || |||||||||||| |||||||
Sbjct 137 ACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTCTCATCATCTTCTC 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5