BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60920.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496244 jgi|Araly1|496244|fgenesh2_kg.8__2060__AT5G60920.1 2717 0.0
> Ahg496244 jgi|Araly1|496244|fgenesh2_kg.8__2060__AT5G60920.1
Length=1816
Score = 2717 bits (1471), Expect = 0.0
Identities = 1727/1844 (94%), Gaps = 43/1844 (2%)
Strand=Plus/Plus
Query 1 CAAAAATGTCTCATTGCTTCTCTCGTTCTaaaaaaaaTCTTGCTGCTATCTCTCTATAAG 60
||||||| |||||||||||||||||||| ||||||| ||||| |||||||| ||||||||
Sbjct 1 CAAAAATTTCTCATTGCTTCTCTCGTTCCAAAAAAACTCTTGGTGCTATCT-TCTATAAG 59
Query 61 TCCACTCCTCCTTCAAGCAAAGCACCTTCCTCTTCTTTTTGCTC-CTCTGAGATTGGTTT 119
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 60 TCCACTCCTCCTTCAAGCAAAGCACCTTCCTCTTCTTCTT-CTCACTCTGAGATTGGTTT 118
Query 120 AAGATTAAACCAGACCCATCTAAGGGATCTGGAACAAGCTTCGTCTCTGGTTCCACTCTG 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 AATCTTAAACCAGACCCATCTAAGGGATCTGGAACAAGCTTCGTCTCTGGTTCTGCTCTG 178
Query 180 ATCATCAGAGTATTAAAAATGGAGTCTTTCTTCTCCAGATCCACCTCCATCGTCTCCAAA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCATCAGAGAATTAAAAATGGAGTCTTTCTTCTCCAGATCCACCTCCATCGTCTCCAAA 238
Query 240 TTGAGTTTCTTGGCCTTATGGATCGTCTTCTTGATTTCTTCATCTTCTTTTACTTCGACA 299
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 TTGAGTTTCTGGGCCTTATGGATCGTGTTCTTGATTTCTTCATCTTCTTTTACTTCGACA 298
Query 300 GAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTCATGAGC 358
Query 360 TGGACTCCTGATGGCTATGTTGCCGTGGTTACGATGTTCAACTTCCAGAAATACAGACAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGACTCCTGATGGCTATGTTGCCGTGGTTACGATGTTCAACTTCCAGAAATACAGACAC 418
Query 420 ATTCAATCTCCAGGATGGACATTAGGTTGGAAATGGGCAAAGAAGGAAGTTATATGGAGT 479
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 419 ATTCAATCTCCGGGATGGACATTAGGCTGGAAATGGGCAAAGAAGGAAGTTATTTGGAGT 478
Query 480 ATGGTTGGAGCACAAACAACTGAACAAGGTGATTGTTCAAAGTACAAAGGAAACATACCA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGGTTGGAGCACAAACAACTGAACAAGGTGATTGTTCAAAGTACAAAGGAAACATACCG 538
Query 540 CATTGTTGTAAGAAGGATCCAACAGTTGTAGACTTGCTTCCAGGGACTCCTTATAATCAG 599
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 539 CATTGTTGTAAGAAAGATCCAACAGTTGTAGACTTGCTTCCTGGGACTCCTTATAACCAG 598
Query 600 CAGATTGCTAATTGCTGCAAGGGTGGTGTTATGAACTCATGGGTTCAAGACCCTGCCACT 659
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 599 CAGATTGCCAATTGCTGCAAAGGTGGTGTCATGAACTCATGGGTACAAGACCCTGCCACC 658
Query 660 GCGGCTAGCTCCTTCCAGATTAGTGTTGGTGCTGCTGGAACCACAAACAAAACCGTTAGG 719
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GCGGCTAGCTCCTTCCAGATCAGTGTTGGCGCTGCTGGAACCACAAACAAAACCGTTAGG 718
Query 720 GTCCCAAGAAACTTCACTCTCATGGGACCTGGTCCAGGTTACACTTGTGGTCCAGCAAAG 779
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GTGCCAAGAAACTTCACTCTCATGGGACCTGGTCCAGGCTACACTTGTGGTCCAGCAAAG 778
Query 780 ATTGTCAGACCAACAAAATTTGTCACGACTGACACACGCAGAACCACTCAAGCTATGATG 839
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 779 ATTGTCAGACCAACAAAATTTGTCACGACCGACACACGGAGAACCACCCAAGCTATGATG 838
Query 840 ACATGGAACATTACGTGCACATACTCGCAGTTCCTTGCTCAAAGAACTCCAACTTGCTGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACATGGAACATTACGTGCACATACTCGCAGTTCCTTGCTCAAAGAACTCCAACTTGCTGT 898
Query 900 GTTTCTTTATCTTCTTTCTACAATGAAACCATTGTTGGATGTCCAACTTGTGCTTGCGGA 959
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 899 GTTTCTTTATCTTCTTTCTACAATGAAACTATTGTCGGATGTCCAACTTGTGCTTGCGGA 958
Query 960 TGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGACCCGGACACACCACACTTAGCC 1019
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGCCAAAACAACAAAACTGAATCCGGTGCCTGCCTCGACCCGGACACACCACACTTAGCC 1018
Query 1020 TCGGTTGTGTCACCACCAACAAAGAAAGGAACGGTTTTACCACCATTAGTGCAATGCACG 1079
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 1019 TCGGTTGTGTCACCTCCAACAAAGAAAGGCACGGTATTACCGCCATTAGTGCAGTGCACG 1078
Query 1080 AGACACATGTGCCCGATCAGAGTGCATTGGCATGTAAAGCAGAACTACAAAGAGTATTGG 1139
|||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1079 AGACACATGTGCCCGATCCGAGTACATTGGCACGTAAAGCAGAACTATAAAGAGTATTGG 1138
Query 1140 CGTGTGAAGATCACAATCACAAACTTCAACTATCGCTTGAACTACACACAATGGAACCTT 1199
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1139 CGAGTGAAGATCACAATCACAAACTTCAACTATCGATTGAACTATACACAATGGAACCTC 1198
Query 1200 GTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCT 1258
Query 1260 CTTACTCCTTACGCTGGACTAAACGATACGGCGATGTTATGGGGAGTGAAGTTCTACAAC 1319
|| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 CTCACTCCGTACGCTGGATTAAACGATACGGCGATGCTATGGGGAGTGAAGTTCTACAAC 1318
Query 1320 GATTTCTTATCAGAAGCAGGTCCTCTTGGGAATGTTCAATCAGAGATTTTGTTCCGTAAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATTTCTTATCAGAAGCAGGTCCTCTTGGGAATGTTCAATCAGAGATTTTGTTCCGTAAA 1378
Query 1380 GACCAATCAACCTTCACATTCGAGAAAGGTTGGGCTTTTCCACGAAGGATTTACTTTAAT 1439
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1379 GATCAATCAACCTTCACATTCGAGAAAGGTTGGGCTTTTCCTCGAAGGATTTACTTTAAT 1438
Query 1440 GGAGACAATTGCGTCATGCCTCCTCCAGACTCTTACCCTTTTCTTCCCAACGGTGGTTCC 1499
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1439 GGAGACAACTGCGTCATGCCTCCTCCTGACTCTTACCCTTTTCTTCCCAACGGTGGTTTC 1498
Query 1500 CGG-TCACAATTCTCATTCGTCGCCGCCGTGCTCCTCCCTCTTCTTG-TCTTTTTCTTCT 1557
||| | ||||||||||||| | |||||||||||||||||| |||| | ||||||||||||
Sbjct 1499 CGGCT-ACAATTCTCATTCTTGGCCGCCGTGCTCCTCCCTGTTCT-GATCTTTTTCTTCT 1556
Query 1558 TCTCTGCCTAATCTCGGATTTACGGTTTTGCCACTGGTTTGCTTAGGGTT--ACGGCGGA 1615
|||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 1557 TCTCTGCCTAATCTCGGATTTACGGTTTTGCCACTGGTATGGTTAGGGTTCGACGGTTGA 1616
Query 1616 GTGGTATAAACGTTTATTTATGATTCTTTTGTGTCCCACAAAAATTATAATCTTTTGATA 1675
|||||||||||||| |||||||||||||| | | |||||||||
Sbjct 1617 GTGGTATAAACGTT-ATTTATGATTCTTT--------A------T------CTTTTGATA 1655
Query 1676 CTTTTTAAAAATATAAATAGTTTTCAACTTCCTTGTTTTTAAAAGAAATTTATATCCTTG 1735
| |||||| | |||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1656 CCTTTTAATA-TATA--TAGTTTTCAACTTCGTTGTTTTTAAAAGAAATTTATATCCCTG 1712
Query 1736 TGTTCTGTTGGTCCGTCGTTGTAGAATATCGGGaa-aaaaaaaaaaaGAT------GTTA 1788
||||||||||||||||||||| |||||||||| || |||||||||||||| ||||
Sbjct 1713 TGTTCTGTTGGTCCGTCGTTGGAGAATATCGGAAACAAAAAAAAAAAGATCATAATGTTA 1772
Query 1789 GATACTGTAAACTTTGTTTTCCGAAC-GTTATATACTTTACTTT 1831
|||| |||||||||||||| || | | |||||||||||||||||
Sbjct 1773 GATATTGTAAACTTTGTTT-CCTA-CTGTTATATACTTTACTTT 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5