BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60960.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496249 jgi|Araly1|496249|fgenesh2_kg.8__2065__AT5G60960.1 2728 0.0
> Ahg496249 jgi|Araly1|496249|fgenesh2_kg.8__2065__AT5G60960.1
Length=1755
Score = 2728 bits (1477), Expect = 0.0
Identities = 1666/1758 (95%), Gaps = 9/1758 (1%)
Strand=Plus/Plus
Query 1 AATTTTCTCTCACTAAATCAGAAATGCCGCCGTCGTTACCGTCTCTGCAACTCCGACGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AATTTTCTCTCACTAAATCAGAAATGCCGCCGTCGTTACCGTCTCTGCAACTCCGGCGGC 60
Query 61 TTCTCCTCCGTAGCTTCA-TT--TCCTCCTCCTCCGTCAATACTCTTCAATCTCAGCCCC 117
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||
Sbjct 61 TTCTCCTCCGTAGCTTCATTTCCTCCTCCTCCTCCGTCAATACTCTTCAAACTCAGTCCC 120
Query 118 GTATCATTTCTTCCAAGCCGTT-GTTTTCTCCTCTTCCCCCTTCCCGTTCCTCTATATTC 176
|| |||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 121 GTCTCATTTCTTCCAAGCC-TTCGTTTTCTCCTCTTCCGCCTTCCCGTTCCTCTACATTC 179
Query 177 TCAACATTTCCTTCTAGATTCTTCTCATCTGAAACGAATGCGGAATCGGAATCTTTGGAT 236
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 180 TCAACATTTCCTTCTAGATTATTCTCATCTGAAACAAATGCGGAATCGGAAACTTTGGAT 239
Query 237 TCGAATGAGATCGCTCTCTCTTTCTCGAAGGAGCTCACCGGGAATCCAGACGCCGAGTCT 296
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 240 TCGAATGAGATCGCTCTCTCGTTCTCGAAGGAGCTCACTGGGAATCCAGACGCCGAGTCT 299
Query 297 CAAACCATTTCGCAGAGATTCAATCTCAGCTTCTCCCACATCACGCCTAATCCCGATTTG 356
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CACGCCATCTCGCAGAGATTCAATCTCAGCTTCTCCCACATCACGCCTAATCCCGATTTG 359
Query 357 ATTCTCCAAACTCTTAATCTCTCACCGGAAGCTGGTCGCGCGGCTCTAGGTTTTAACGAG 416
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 ATTCTCCAAACTCTAAATCTCTCACCGGAAGCTGGTCGCGCGGCTCTAGGCTTTAACGAG 419
Query 417 TGGTTAGATTCGAACTCTAACTTCTCTCACACCGATGAAACAGTTTCGTTTTTCGTCGAT 476
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TGGTTGGATTCGAACTCTAACTTCTCTCACACCGATGAAACAGTTTCGTATTTCGTCGAT 479
Query 477 TACTTTGGCCGTCGGAAAGATTTCAAAGGAATGCTAGAGATCATCTCGAAATACAAAGGT 536
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TACTTTGGTCGTCGGAAAGATTTCAAAGGGATGCTAGAGATCATCTCGAAATACAAAGGT 539
Query 537 ATCGCCGGAGGTAAAACACTAGAATCGGCGATTGATAGGCTTGTTAGAGCTGGTAGACCT 596
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 540 ATCGCCGGAGCTAAAACACTAGAATCGGCGATTGATAGGCTTGTTCGAGCTGATAGACCT 599
Query 597 AAGCAGGTCACTGATTTCTTCGAGAAAATGGAGAATGATTATGGTTTGAAACGTGATAAA 656
||||||||| ||| ||||||||||||||||||||| ||||| || ||||||||||| | |
Sbjct 600 AAGCAGGTCGCTGCTTTCTTCGAGAAAATGGAGAACGATTACGGATTGAAACGTGACAGA 659
Query 657 GAATCACTTACCTTGGTTGTGAAGAAGCTTTGTGAGAAAGGACACGCGAGTATCGCAGAG 716
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GATTCACTTACATTGGTTGTGAAGAAGCTATGTGAGAAAGGACACGCGAGTATCGCAGAG 719
Query 717 AAGATGGTGAAGAACACTGCTAATGAAATATTTCCTGATGAGAATATATGTGATTTGTTG 776
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 720 AAGATGGTGAAGAACACTGCTAATGATATATTTCCTGATGAAAATATTTGTGACTTGTTG 779
Query 777 ATTAGTGGATGGTGTATTGCTGAGAAACTCGATGAAGCAACTAGGTTAGCTGGTGAAATG 836
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 ATTAGTGGTTGGTGTACTGCTGAGAAACTCGATGAAGCAACTAGGTTAGCTGGTGAGATG 839
Query 837 TCTAGAGGAGGATTTGAGATAGGAACCAAAGCGTATAACATGATGCTTGATTGTGTTTGT 896
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 840 TCTAGAGGAGGATTTGAGATAGGAACAAAAGCGTATAACATGATCCTTGATTGTGTTTGT 899
Query 897 AAGCTTTGTAGGAAGAAAGATCCTTTTAAGCTTCAACCTGAAGTAGAGAAGGTTTTGCTG 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGCTTTGTAGGAAGAAAGATCCGTTTAAGCTTCAACCTGAAGTAGAGAAGGTTTTGCTG 959
Query 957 GAGATGGAGTTTCGTGGTGTACCTAGAAACACAGAGACTTTCAATGTGTTGATTAACAAT 1016
|| |||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 960 GAAATGGAGTTCCGTGGTGTGCCGAGAAATACAGAGACTTTCAATGTGTTGATTAACAAT 1019
Query 1017 CTTTGTAAAATCAGGAGAACTGAAGAAGCAATGACATTGTTTGGTAGGATGGGTGAATGG 1076
|||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 1020 CTTTGTAAAATCAGGAGAACCGAAGAAGCGATGACATTGTTTGCTAGGATGGGTGAATGG 1079
Query 1077 GGTTGTCAACCAGATGCTGAGACTTATCTTGTTCTGATTAGGAGTTTGTATCAAGCAGCG 1136
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1080 GGTTGTCAACCAGATGCTGAGACTTATCTTGTTCTGATCAGGAGTTTATATCAAGCAGCC 1139
Query 1137 AGGATCGGTGAAGGGGACGAAATGATCGATAAGATGAAATCAGCGGGATATGGTGAGCT- 1195
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 1140 AGGATCGGTGAAGGAGACGAAATGATCGATAAGATGAAATCAGCTGGATACGGTGAG-TC 1198
Query 1196 TTTGAATAAGAAAGAGTATTACGGGTTTCTCAAGATATTGTGTGGGATTGAGAGGCTTGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTTGAATAAGAAAGAGTATTACGGGTTTCTCAAGATATTGTGTGGGATTGAGAGGCTTGA 1258
Query 1256 GCATGCGATGAGTGTGTTTAAGAGCATGAAAGCTAATGGATGCAAACCTGGGATCAAGAC 1315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCATGCGATGAGTGTGTTCAAGAGCATGAAAGCTAATGGATGCAAACCTGGGATCAAGAC 1318
Query 1316 TTATGATTTGTTGATGGGGAAAATGTGTGCGAATAACCAGCTGACTAGAGCTAATGGTTT 1375
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1319 TTATGATTTGTTGATGGGGAAAATGTGTGCGAATAATCAGCTAACTAGAGCTAATGGTTT 1378
Query 1376 GTATAAAGAAGCGGCTAAGAAAGGAATCGCTGTTAGCCCTAAGGAATACAGAGTAGATCC 1435
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1379 GTACAAAGAAGCGGCTAAGAAAGGTATCGCTGTTAGCCCTAAGGAATACAGAGTTGATCC 1438
Query 1436 ACGGTTTATGAAAAAGAAGACCAAGGAAGTGGATAGCAATGTTAAGAAGAGGGAGACTTT 1495
|||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1439 GCGGTTTTTGAAAAAGAAGACCAAGGAAGTGGATACCAATGTGAAGAAGAGGGAGACTTT 1498
Query 1496 GCCTGAGAAAACCGCGAGGAAGAAGAAACGGCTCAAGCAGATCAATATGAGTTTTGTTAA 1555
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACCTGAGAAAACTGCGAGGAAGAAGAAACGGCTCAAGCAGATCAATATGAGTTTTGTTAA 1558
Query 1556 GAAACCGCACAATAAGATGAGACGGAGAATGTGATGCTGATGAATCTTCAACATCTGATA 1615
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1559 GAAACCGCACAATAAGATGAGACGAAGAATGTGATGCTGATGA-TCTTCAACATCTGATA 1617
Query 1616 GAATTTTCTAAAGATTATTGTCTTTGTTCTTTCC-TTTTTAAGATATTGTCAAGAGTACT 1674
| |||||||||||||||| ||||||||||||||| |||||||||| |||||| || ||||
Sbjct 1618 GGATTTTCTAAAGATTATGGTCTTTGTTCTTTCCCTTTTTAAGATTTTGTCAGGAATACT 1677
Query 1675 CATCATTTTGCTTGATCATGAGCAAATTGTCCCAATAATCTTTTGTTTTGTCTCAGTGTA 1734
||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 1678 CATGTTTTTGCTTGATCACGAGCAAATTATCCCAATAATCTTTTGGTTTGTCTCAATGTA 1737
Query 1735 ACGTTTACTAAGAGTTCA 1752
|||||||| ||||||||
Sbjct 1738 ACGTTTACCCAGAGTTCA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5