BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60970.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496250 jgi|Araly1|496250|fgenesh2_kg.8__2066__AT5G60970.1 1550 0.0
> Ahg496250 jgi|Araly1|496250|fgenesh2_kg.8__2066__AT5G60970.1
Length=1105
Score = 1550 bits (839), Expect = 0.0
Identities = 951/1003 (95%), Gaps = 15/1003 (1%)
Strand=Plus/Plus
Query 251 ACATGTTGCAACAACAACAG-CCGAGTTCGG--T-ATCATCTTCAAGGCAATGGACTTCA 306
||||||||||||| |||| | |||||||||| | |||||||||||||||||||||||||
Sbjct 109 ACATGTTGCAACAGCAAC-GACCGAGTTCGGTATCATCATCTTCAAGGCAATGGACTTCA 167
Query 307 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAC 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAT 227
Query 367 AGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 426
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AGCAAAGTCTGTACGGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 287
Query 427 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATT 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATC 347
Query 487 GATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCA 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 GATTGGTTACTCGAAGCAGCAAAAGATGACGTCGACAAGCTACCTCCTCTACAATTCCCA 407
Query 547 CATGGATTTAACCAGATGTATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCT 606
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 408 CATGGGTTTAACCAAATGTATCCAAATCTCATCTTTGGAAACTCCGGGTTTGGAGAATCG 467
Query 607 CCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 666
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 468 CCATCTTCAACTTCATCAACAGCGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 527
Query 667 GATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGA 726
||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 528 GATCTTGGTGGTTCTTCCAGAACAAGATCAAGATTAACCGATACTACTACGACCCAGAGA 587
Query 727 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAACGACGAGAATAGTAATCAAGAT 786
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 588 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAACACGACGAGAATAGTAATCACGAT 647
Query 787 CATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAAC 846
||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 648 CATCAAGGGTTCGACACCAATCATCAACAT---TTTCCACTGACCAATCCTTACAACAAC 704
Query 847 ACTTCAGCTTATTACAACCTTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAAC 906
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 705 ACTTCATCTTATTACAACCTCGGACATCTTCAACAATCGTTAGACCAATCCGGTAATAAC 764
Query 907 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCCT 966
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 765 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAACAACAATAATCTCAATTTGCCTCCT 824
Query 967 CCTTCCTCGTCTGCCGGAGATGGATCTCAGCtttttttCGGTCCTACTCCTCCGGCAATG 1026
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 825 CCTTCCTCGTCTGCTGGAGATGGATCTCAGCTTTTTTTTGGTCCTTCTCCTCCAGCAATG 884
Query 1027 AGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCTTCTCATCATCATCAT---GTC 1083
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 885 AGCTCTCTATTCCCGACATACCCTTCGTTTCTCGGAGCTTCTCATCATCATCATCATGTC 944
Query 1084 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCT-CGAATTCAAATACCGCATCGCAGCA 1142
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 945 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAG-TACGAATTCAAATACCGCCTCGCAGCA 1003
Query 1143 ACACATGATGC-CGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1201
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ACAGTTGAT-CACGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1062
Query 1202 ATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTC 1244
||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1063 ATCATGATACGGATCGTCATAGTAGCGATAATGAATCAGATTC 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5